Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 1-298 |
| Cow position: | chr13:14112566-14112864 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 1-298 |
| Cow position: | chr13:21587133-21587438 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 9-240 |
| Cow position: | chr13:38624829-38625062 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 34, 60 |
| Conread position: | 9-297 |
| Cow position: | chr13:34095321-34095021 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 15, 115 |
| Conread position: | 9-298 |
| Cow position: | chr13:30274835-30274541 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 9-300 |
| Cow position: | chr13:58843309-58843614 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 9-318 |
| Cow position: | chr13:34017515-34017184 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 10-300 |
| Cow position: | chr13:41567564-41567282 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 195, 35 |
| Conread position: | 13-289 |
| Cow position: | chr13:29519052-29519338 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 38-296 |
| Cow position: | chr13:47569726-47569982 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 43-292 |
| Cow position: | chr13:30795075-30794822 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 43-292 |
| Cow position: | chr13:36244287-36244039 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 43-298 |
| Cow position: | chr13:32080514-32080774 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 43-298 |
| Cow position: | chr13:49976307-49976568 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 52-292 |
| Cow position: | chr13:35955644-35955884 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 87-287 |
| Cow position: | chr13:28699511-28699709 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-291 |
| Cow position: | chr13:1591465-1591265 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-291 |
| Cow position: | chr13:21837608-21837406 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr13:18330436-18330233 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr13:3021796-3021587 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 87-298 |
| Cow position: | chr13:16807286-16807495 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr13:35539861-35540070 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr13:47729109-47728900 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr13:50112155-50112364 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-319 |
| Cow position: | chr13:561695-561467 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-319 |
| Cow position: | chr13:15921768-15921538 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-319 |
| Cow position: | chr13:58313021-58313251 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 104-300 |
| Cow position: | chr13:41362307-41362511 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 115-298 |
| Cow position: | chr13:3657636-3657452 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 406-570 |
| Cow position: | chr13:28605832-28605997 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 406-586 |
| Cow position: | chr13:55407080-55407260 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 406-587 |
| Cow position: | chr13:2416461-2416642 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 37, 125 |
| Conread position: | 406-588 |
| Cow position: | chr13:12213889-12214078 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 406-588 |
| Cow position: | chr13:17597190-17597362 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 406-588 |
| Cow position: | chr13:33239932-33240114 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 407-531 |
| Cow position: | chr13:46464408-46464282 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 407-547 |
| Cow position: | chr13:17169612-17169747 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-557 |
| Cow position: | chr13:12658123-12658269 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 407-558 |
| Cow position: | chr13:51241142-51241295 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 407-574 |
| Cow position: | chr13:10854602-10854432 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-584 |
| Cow position: | chr13:38534977-38534808 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 34 |
| Conread position: | 407-587 |
| Cow position: | chr13:22193826-22194004 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 407-587 |
| Cow position: | chr13:24403955-24403776 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 407-587 |
| Cow position: | chr13:34885394-34885577 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 164 |
| Conread position: | 407-587 |
| Cow position: | chr13:43385213-43385388 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 407-588 |
| Cow position: | chr13:4659652-4659472 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 407-588 |
| Cow position: | chr13:11223010-11222836 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 407-588 |
| Cow position: | chr13:12325514-12325682 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 407-588 |
| Cow position: | chr13:14708783-14708967 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 122 |
| Conread position: | 407-588 |
| Cow position: | chr13:15489938-15490119 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 162 |
| Conread position: | 407-588 |
| Cow position: | chr13:24197972-24197799 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 407-588 |
| Cow position: | chr13:38361879-38361698 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 154 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 407-588 |
| Cow position: | chr13:44143990-44143811 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 407-588 |
| Cow position: | chr13:45497693-45497858 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-588 |
| Cow position: | chr13:57611639-57611821 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 408-588 |
| Cow position: | chr13:4796248-4796425 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 408-588 |
| Cow position: | chr13:19015050-19014870 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 408-588 |
| Cow position: | chr13:19115832-19116002 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 408-588 |
| Cow position: | chr13:37498121-37498300 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 409-581 |
| Cow position: | chr13:25955206-25955031 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 409-588 |
| Cow position: | chr13:30951051-30950866 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 410-565 |
| Cow position: | chr13:51142594-51142445 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 410-570 |
| Cow position: | chr13:14080028-14079865 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 410-585 |
| Cow position: | chr13:6921179-6921002 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 410-587 |
| Cow position: | chr13:20876671-20876491 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 410-587 |
| Cow position: | chr13:59997379-59997197 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 410-588 |
| Cow position: | chr13:18839487-18839663 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 410-588 |
| Cow position: | chr13:48580568-48580394 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 410-588 |
| Cow position: | chr13:51435065-51434887 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 411-587 |
| Cow position: | chr13:698802-698970 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 412-586 |
| Cow position: | chr13:27795821-27795993 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 416-586 |
| Cow position: | chr13:57746274-57746446 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 427-588 |
| Cow position: | chr13:48080209-48080370 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 432-586 |
| Cow position: | chr13:18541398-18541548 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 433-586 |
| Cow position: | chr13:13987864-13987714 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 435-563 |
| Cow position: | chr13:2807789-2807916 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 441-588 |
| Cow position: | chr13:34264653-34264511 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 441-588 |
| Cow position: | chr13:51177603-51177750 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 445-575 |
| Cow position: | chr13:26034452-26034323 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 467-584 |
| Cow position: | chr13:33503018-33503134 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 468-588 |
| Cow position: | chr13:25877583-25877703 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 473-588 |
| Cow position: | chr13:20496477-20496362 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.