Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 1-237 |
| Cow position: | chr14:36173440-36173684 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 9-294 |
| Cow position: | chr14:31709325-31709622 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 146 |
| Conread position: | 9-319 |
| Cow position: | chr14:21047202-21046879 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 9-327 |
| Cow position: | chr14:12802137-12801809 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 113 |
| Conread position: | 10-295 |
| Cow position: | chr14:37981851-37981559 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 240 |
| Conread position: | 42-291 |
| Cow position: | chr14:45997035-45996780 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 43-292 |
| Cow position: | chr14:34674608-34674863 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 43-298 |
| Cow position: | chr14:9811188-9811449 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 43-310 |
| Cow position: | chr14:44077176-44076908 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 43-319 |
| Cow position: | chr14:16997532-16997249 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 43-319 |
| Cow position: | chr14:33679556-33679837 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 45-292 |
| Cow position: | chr14:37226682-37226935 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 45-292 |
| Cow position: | chr14:37882262-37882514 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 71-273 |
| Cow position: | chr14:41510405-41510603 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 87-290 |
| Cow position: | chr14:22103998-22103797 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-291 |
| Cow position: | chr14:5644965-5645167 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-292 |
| Cow position: | chr14:11474731-11474528 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr14:20785654-20785857 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr14:46302464-46302667 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr14:9047397-9047606 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr14:13237240-13237031 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 87-298 |
| Cow position: | chr14:17762827-17762621 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-298 |
| Cow position: | chr14:38435592-38435799 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-319 |
| Cow position: | chr14:23254779-23254549 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-319 |
| Cow position: | chr14:31882329-31882099 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 88-298 |
| Cow position: | chr14:14666807-14666598 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 110-284 |
| Cow position: | chr14:48442007-48441832 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 111-298 |
| Cow position: | chr14:15337053-15336865 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 406-543 |
| Cow position: | chr14:15662586-15662723 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 406-584 |
| Cow position: | chr14:37983768-37983945 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 406-586 |
| Cow position: | chr14:17462933-17462755 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 406-588 |
| Cow position: | chr14:19735126-19735309 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 407-584 |
| Cow position: | chr14:17051212-17051036 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 407-586 |
| Cow position: | chr14:40243809-40243626 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 407-587 |
| Cow position: | chr14:3589284-3589452 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 407-588 |
| Cow position: | chr14:15011842-15012024 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 407-588 |
| Cow position: | chr14:22046481-22046309 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-588 |
| Cow position: | chr14:25994389-25994565 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 407-588 |
| Cow position: | chr14:30762297-30762128 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 407-588 |
| Cow position: | chr14:32903997-32904177 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 150 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 136, 38 |
| Conread position: | 407-588 |
| Cow position: | chr14:36420404-36420581 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 407-588 |
| Cow position: | chr14:41712656-41712485 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 37 |
| Conread position: | 407-588 |
| Cow position: | chr14:44023903-44023726 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 407-588 |
| Cow position: | chr14:50650182-50649998 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 173 |
| Conread position: | 408-569 |
| Cow position: | chr14:17556269-17556107 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 408-588 |
| Cow position: | chr14:10949872-10950050 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 408-588 |
| Cow position: | chr14:35605684-35605861 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 408-588 |
| Cow position: | chr14:35685463-35685642 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 408-588 |
| Cow position: | chr14:38413119-38412943 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 156, 22 |
| Conread position: | 409-588 |
| Cow position: | chr14:34912316-34912494 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 124 |
| Conread position: | 410-536 |
| Cow position: | chr14:44771712-44771587 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 410-588 |
| Cow position: | chr14:38000033-37999862 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 410-588 |
| Cow position: | chr14:38722500-38722326 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 411-588 |
| Cow position: | chr14:47880484-47880665 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 427-588 |
| Cow position: | chr14:28007225-28007070 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 429-587 |
| Cow position: | chr14:44787468-44787311 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 56 |
| Conread position: | 432-586 |
| Cow position: | chr14:31810275-31810127 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 433-588 |
| Cow position: | chr14:29481207-29481362 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-588 |
| Cow position: | chr14:25447989-25447852 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 442-588 |
| Cow position: | chr14:3436250-3436112 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 442-588 |
| Cow position: | chr14:44454053-44453901 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 445-587 |
| Cow position: | chr14:30134248-30134390 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 448-587 |
| Cow position: | chr14:20643056-20643189 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 454-588 |
| Cow position: | chr14:28574814-28574680 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 460-557 |
| Cow position: | chr14:45019093-45019190 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.