Cow genome map

Conread name: Ss1.1-rpigcf0_008825.5

Conread position: 9-273
Cow position: chr15:11787713-11787983 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 71

Conread position: 13-319
Cow position: chr15:9389633-9389951 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 30, 111

Conread position: 28-317
Cow position: chr15:22143741-22143452 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 89

Conread position: 33-289
Cow position: chr15:8029506-8029245 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 10

Conread position: 33-319
Cow position: chr15:5454294-5454578 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 11

Conread position: 41-318
Cow position: chr15:1775652-1775935 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 159

Conread position: 43-292
Cow position: chr15:7319079-7319332 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 62

Conread position: 43-292
Cow position: chr15:7547386-7547635 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 116, 106

Conread position: 43-298
Cow position: chr15:4140398-4140137 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 170
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 114

Conread position: 43-327
Cow position: chr15:8101969-8102254 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 72

Conread position: 44-298
Cow position: chr15:19654564-19654822 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 26, 73

Conread position: 49-303
Cow position: chr15:262612-262860 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 42

Conread position: 54-317
Cow position: chr15:19104936-19104673 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 50

Conread position: 56-319
Cow position: chr15:30474192-30473925 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 14, 57

Conread position: 61-299
Cow position: chr15:11627940-11628176 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 37

Conread position: 61-314
Cow position: chr15:34955444-34955697 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 48

Conread position: 61-319
Cow position: chr15:4388280-4388540 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 42

Conread position: 71-292
Cow position: chr15:18660860-18661083 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 73

Conread position: 87-288
Cow position: chr15:6381484-6381286 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-290
Cow position: chr15:7270901-7271101 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 72, 12

Conread position: 87-293
Cow position: chr15:16966932-16966728 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 11

Conread position: 87-298
Cow position: chr15:6762533-6762324 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr15:12858705-12858914 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 10

Conread position: 87-298
Cow position: chr15:13430387-13430597 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr15:17074799-17074590 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 10

Conread position: 87-298
Cow position: chr15:23666931-23666722 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr15:25165723-25165514 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr15:28487565-28487356 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr15:31270308-31270099 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr15:33753717-33753508 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr15:36329897-36329688 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 12

Conread position: 87-298
Cow position: chr15:36940819-36940610 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 10

Conread position: 87-298
Cow position: chr15:42944043-42943834 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-300
Cow position: chr15:44666648-44666437 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-313
Cow position: chr15:42939479-42939703 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-318
Cow position: chr15:2633146-2632917 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 11

Conread position: 87-319
Cow position: chr15:1785332-1785559 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 10

Conread position: 87-327
Cow position: chr15:20405053-20404816 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 88-246
Cow position: chr15:22129774-22129928 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 114, 20

Conread position: 100-320
Cow position: chr15:41147343-41147565 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 91

Conread position: 406-588
Cow position: chr15:37633438-37633622 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 26, 86

Conread position: 407-573
Cow position: chr15:10581485-10581647 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 18, 48

Conread position: 407-584
Cow position: chr15:11287311-11287132 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 149
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 26, 0

Conread position: 407-586
Cow position: chr15:39809580-39809761 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 148
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 407-586
Cow position: chr15:49272012-49272186 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 52

Conread position: 407-587
Cow position: chr15:582918-583100 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 50

Conread position: 407-587
Cow position: chr15:5912311-5912128 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 150
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 0

Conread position: 407-587
Cow position: chr15:30570212-30570397 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 0

Conread position: 407-587
Cow position: chr15:49279392-49279209 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 62

Conread position: 407-587
Cow position: chr15:52868894-52869074 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 17, 52

Conread position: 407-588
Cow position: chr15:7443856-7443670 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 25, 53

Conread position: 407-588
Cow position: chr15:8630416-8630590 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 88, 0

Conread position: 407-588
Cow position: chr15:9437580-9437753 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 129, 25

Conread position: 407-588
Cow position: chr15:16669350-16669167 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 154
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 24, 66

Conread position: 407-588
Cow position: chr15:17642276-17642451 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 147
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 0

Conread position: 407-588
Cow position: chr15:23265851-23266032 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 92

Conread position: 407-588
Cow position: chr15:25683774-25683955 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 407-588
Cow position: chr15:35067005-35067189 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 407-588
Cow position: chr15:53712913-53713095 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 148
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 24, 50

Conread position: 407-588
Cow position: chr15:53728199-53728021 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 110, 20

Conread position: 408-587
Cow position: chr15:16989569-16989748 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 148
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 25, 110

Conread position: 408-588
Cow position: chr15:4622692-4622519 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 408-588
Cow position: chr15:18404004-18404174 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 408-588
Cow position: chr15:21182073-21182252 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 31

Conread position: 408-588
Cow position: chr15:21802624-21802797 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 409-548
Cow position: chr15:53335428-53335570 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 409-568
Cow position: chr15:12048659-12048507 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 409-588
Cow position: chr15:52131916-52132097 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 149
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 410-587
Cow position: chr15:13081390-13081577 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 58, 0

Conread position: 410-588
Cow position: chr15:31917639-31917466 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 65

Conread position: 410-588
Cow position: chr15:31935610-31935789 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 65

Conread position: 410-588
Cow position: chr15:40065966-40066146 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 20, 138

Conread position: 411-587
Cow position: chr15:19813421-19813244 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 89

Conread position: 413-573
Cow position: chr15:44797183-44797024 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 10

Conread position: 413-586
Cow position: chr15:6523362-6523191 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 90

Conread position: 413-588
Cow position: chr15:16972063-16971890 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 427-588
Cow position: chr15:41807443-41807284 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 134
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 68, 0

Conread position: 428-587
Cow position: chr15:28608073-28607914 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 434-568
Cow position: chr15:11997860-11997994 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 435-577
Cow position: chr15:26594344-26594202 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 435-586
Cow position: chr15:36278089-36277940 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 127, 0

Conread position: 438-571
Cow position: chr15:12283272-12283405 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 441-587
Cow position: chr15:9075434-9075577 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 85

Conread position: 445-584
Cow position: chr15:1992771-1992910 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 450-585
Cow position: chr15:2437221-2437354 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 451-588
Cow position: chr15:37491608-37491478 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 458-588
Cow position: chr15:51637294-51637164 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 459-584
Cow position: chr15:21417466-21417592 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 470-588
Cow position: chr15:27971607-27971490 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 508-588
Cow position: chr15:36582351-36582270 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 75
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.