Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 1-298 |
| Cow position: | chr16:42179420-42179732 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 1-300 |
| Cow position: | chr16:30696439-30696127 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 9-273 |
| Cow position: | chr16:34247758-34247486 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 33-226 |
| Cow position: | chr16:23719248-23719051 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 33-292 |
| Cow position: | chr16:25344132-25344396 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 38-292 |
| Cow position: | chr16:23465206-23465466 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 43-273 |
| Cow position: | chr16:16960699-16960466 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 43-292 |
| Cow position: | chr16:28206945-28206693 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 43-298 |
| Cow position: | chr16:47403547-47403806 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 43-300 |
| Cow position: | chr16:22853159-22853406 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 43-319 |
| Cow position: | chr16:18975033-18975313 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 44-318 |
| Cow position: | chr16:15538613-15538884 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 45-317 |
| Cow position: | chr16:15549021-15549295 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 46-310 |
| Cow position: | chr16:35273025-35273291 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 80-289 |
| Cow position: | chr16:34709-34915 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 86-298 |
| Cow position: | chr16:4343688-4343479 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 87-286 |
| Cow position: | chr16:5664004-5664200 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-291 |
| Cow position: | chr16:14100069-14100269 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 11 |
| Conread position: | 87-292 |
| Cow position: | chr16:2408679-2408476 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-292 |
| Cow position: | chr16:14662893-14662690 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr16:5525890-5525680 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 87-298 |
| Cow position: | chr16:15311498-15311707 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr16:17111467-17111676 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr16:21189473-21189682 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr16:24988502-24988293 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr16:27593607-27593398 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr16:28168103-28167894 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr16:28194085-28193876 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-299 |
| Cow position: | chr16:12535723-12535513 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 87-319 |
| Cow position: | chr16:15812283-15812513 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 87-319 |
| Cow position: | chr16:16150532-16150302 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-319 |
| Cow position: | chr16:46554637-46554867 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 111-298 |
| Cow position: | chr16:26388929-26388741 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 114-273 |
| Cow position: | chr16:24625845-24625685 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 406-588 |
| Cow position: | chr16:5131375-5131195 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 406-588 |
| Cow position: | chr16:14444581-14444760 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 407-573 |
| Cow position: | chr16:15509338-15509503 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 407-583 |
| Cow position: | chr16:37508490-37508663 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-585 |
| Cow position: | chr16:30109424-30109250 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 119 |
| Conread position: | 407-585 |
| Cow position: | chr16:51456726-51456899 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 407-586 |
| Cow position: | chr16:16118864-16119045 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:2722643-2722456 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:4854559-4854387 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:12243137-12242965 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:13044255-13044434 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 407-588 |
| Cow position: | chr16:14084743-14084563 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:14799330-14799153 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:17365493-17365677 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:30572221-30572039 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 145 |
| Conread position: | 407-588 |
| Cow position: | chr16:43850110-43849933 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:43850424-43850241 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:48894415-48894238 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 151 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:56373471-56373295 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 408-586 |
| Cow position: | chr16:47781707-47781888 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 151 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 408-588 |
| Cow position: | chr16:19446007-19446179 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 169, 33 |
| Conread position: | 409-587 |
| Cow position: | chr16:24038503-24038684 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 410-583 |
| Cow position: | chr16:37441501-37441331 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 410-588 |
| Cow position: | chr16:23034890-23034711 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 410-588 |
| Cow position: | chr16:31374500-31374318 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 410-588 |
| Cow position: | chr16:32352525-32352702 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 411-586 |
| Cow position: | chr16:23301744-23301918 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 411-588 |
| Cow position: | chr16:41680351-41680174 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 134, 171 |
| Conread position: | 416-565 |
| Cow position: | chr16:14423317-14423468 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 432-584 |
| Cow position: | chr16:24635108-24634958 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 432-587 |
| Cow position: | chr16:3742696-3742539 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 432-588 |
| Cow position: | chr16:12474079-12474232 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 432-588 |
| Cow position: | chr16:26075279-26075438 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 432-588 |
| Cow position: | chr16:53547180-53547030 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 433-588 |
| Cow position: | chr16:45057845-45057997 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 74, 128 |
| Conread position: | 434-588 |
| Cow position: | chr16:4295095-4294943 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 435-583 |
| Cow position: | chr16:52650084-52649936 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 126, 42 |
| Conread position: | 439-586 |
| Cow position: | chr16:13209759-13209902 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 439-586 |
| Cow position: | chr16:22785606-22785459 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-584 |
| Cow position: | chr16:26106593-26106734 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 441-587 |
| Cow position: | chr16:53516213-53516061 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 445-573 |
| Cow position: | chr16:16622412-16622290 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 445-587 |
| Cow position: | chr16:17219012-17218875 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 448-588 |
| Cow position: | chr16:37024803-37024667 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 452-584 |
| Cow position: | chr16:38397886-38397755 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 452-588 |
| Cow position: | chr16:10198441-10198578 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 452-588 |
| Cow position: | chr16:27075611-27075749 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 456-588 |
| Cow position: | chr16:14824526-14824395 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 501-588 |
| Cow position: | chr16:7086281-7086194 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 78 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.