Cow genome map

Conread name: Ss1.1-rpigcf0_008825.5

Conread position: 1-310
Cow position: chr17:23280313-23280005 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 11, 28

Conread position: 2-264
Cow position: chr17:3606060-3605789 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 117

Conread position: 9-300
Cow position: chr17:18850173-18850477 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 12, 113

Conread position: 43-291
Cow position: chr17:15808713-15808964 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 166
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 49

Conread position: 43-299
Cow position: chr17:27434349-27434606 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 25, 81

Conread position: 43-317
Cow position: chr17:20694924-20695210 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 73

Conread position: 43-317
Cow position: chr17:38942332-38942607 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 72

Conread position: 55-298
Cow position: chr17:22237297-22237539 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 17, 58

Conread position: 87-287
Cow position: chr17:183922-184120 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 10

Conread position: 87-292
Cow position: chr17:31050645-31050448 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 15

Conread position: 87-296
Cow position: chr17:29820910-29821117 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 21

Conread position: 87-298
Cow position: chr17:15117592-15117801 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 21

Conread position: 87-298
Cow position: chr17:15325460-15325252 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr17:15709218-15709009 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr17:15719118-15719327 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr17:44641695-44641486 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-319
Cow position: chr17:452629-452857 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 118, 10

Conread position: 87-319
Cow position: chr17:2264968-2265200 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 159
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 10

Conread position: 87-327
Cow position: chr17:22106860-22106620 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 72, 10

Conread position: 88-298
Cow position: chr17:29825185-29824977 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 71, 9

Conread position: 88-299
Cow position: chr17:18100299-18100089 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 71, 9

Conread position: 88-319
Cow position: chr17:19215618-19215389 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 9

Conread position: 89-298
Cow position: chr17:6122560-6122767 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 8

Conread position: 406-586
Cow position: chr17:10261560-10261735 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 53

Conread position: 406-587
Cow position: chr17:33271335-33271154 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 47, 26

Conread position: 406-588
Cow position: chr17:12842710-12842892 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 98

Conread position: 407-564
Cow position: chr17:701842-701999 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 153

Conread position: 407-579
Cow position: chr17:13703740-13703913 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 21, 0

Conread position: 407-584
Cow position: chr17:404304-404488 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 33

Conread position: 407-585
Cow position: chr17:15450943-15451115 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 121

Conread position: 407-586
Cow position: chr17:3223804-3223973 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 407-586
Cow position: chr17:11225631-11225808 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 407-586
Cow position: chr17:34319697-34319508 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 407-588
Cow position: chr17:2736162-2736342 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 19, 106

Conread position: 407-588
Cow position: chr17:7211060-7211240 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 17, 0

Conread position: 407-588
Cow position: chr17:10850902-10850730 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 407-588
Cow position: chr17:17500907-17500739 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 407-588
Cow position: chr17:18417795-18417608 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 118

Conread position: 407-588
Cow position: chr17:26481268-26481449 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 167

Conread position: 407-588
Cow position: chr17:28847201-28847019 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 28, 93

Conread position: 407-588
Cow position: chr17:32451215-32451027 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 410-587
Cow position: chr17:19789427-19789252 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 143, 59

Conread position: 411-586
Cow position: chr17:43143344-43143165 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 102

Conread position: 413-588
Cow position: chr17:4625215-4625387 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 45

Conread position: 413-588
Cow position: chr17:27622453-27622287 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 418-587
Cow position: chr17:13235969-13236138 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 433-586
Cow position: chr17:19447313-19447164 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 93

Conread position: 433-588
Cow position: chr17:10436877-10436726 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 437-587
Cow position: chr17:26630735-26630587 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 441-586
Cow position: chr17:14780023-14780167 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 449-587
Cow position: chr17:45212580-45212443 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 34, 16

Conread position: 450-588
Cow position: chr17:37722662-37722523 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 131, 0

Conread position: 450-588
Cow position: chr17:41899117-41898977 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 116, 0

Conread position: 451-582
Cow position: chr17:1364595-1364466 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 463-588
Cow position: chr17:25117576-25117701 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 476-588
Cow position: chr17:3797788-3797900 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.