Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 1-237 |
| Cow position: | chr18:44024372-44024610 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 10-298 |
| Cow position: | chr18:23072172-23071877 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 113 |
| Conread position: | 13-271 |
| Cow position: | chr18:26649710-26649962 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 164 |
| Conread position: | 17-298 |
| Cow position: | chr18:14423178-14423471 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 26, 111 |
| Conread position: | 31-319 |
| Cow position: | chr18:22481601-22481882 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 41-298 |
| Cow position: | chr18:32164987-32164724 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 64 |
| Conread position: | 43-291 |
| Cow position: | chr18:19310115-19310367 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 45-298 |
| Cow position: | chr18:19543598-19543348 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 49-295 |
| Cow position: | chr18:45616742-45616993 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 54-296 |
| Cow position: | chr18:33618170-33617921 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 60-298 |
| Cow position: | chr18:20287922-20287692 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 76-288 |
| Cow position: | chr18:27602141-27602350 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 87-291 |
| Cow position: | chr18:51459843-51459641 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr18:27989755-27989958 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr18:41838114-41837911 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr18:603466-603257 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-298 |
| Cow position: | chr18:5202487-5202696 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr18:11271845-11271636 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr18:24211935-24212144 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr18:37583460-37583250 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr18:52630259-52630050 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-298 |
| Cow position: | chr18:55554249-55554458 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-319 |
| Cow position: | chr18:6733964-6733734 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-319 |
| Cow position: | chr18:35296166-35296396 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 160-298 |
| Cow position: | chr18:23071766-23071629 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 406-558 |
| Cow position: | chr18:5060164-5060009 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 406-586 |
| Cow position: | chr18:24664069-24663894 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 406-586 |
| Cow position: | chr18:52870984-52871162 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 406-587 |
| Cow position: | chr18:25846660-25846482 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 406-588 |
| Cow position: | chr18:27405266-27405440 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 406-588 |
| Cow position: | chr18:29081391-29081567 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 407-531 |
| Cow position: | chr18:8170795-8170922 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 407-586 |
| Cow position: | chr18:1700956-1701136 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-587 |
| Cow position: | chr18:22433410-22433232 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 407-588 |
| Cow position: | chr18:16259639-16259821 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr18:36456413-36456594 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 407-588 |
| Cow position: | chr18:39474892-39474711 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 407-588 |
| Cow position: | chr18:50880857-50881043 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr18:53047679-53047502 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 408-571 |
| Cow position: | chr18:51331967-51332132 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 408-586 |
| Cow position: | chr18:32861027-32861204 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 408-588 |
| Cow position: | chr18:21123143-21122975 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 408-588 |
| Cow position: | chr18:26866213-26866389 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 409-585 |
| Cow position: | chr18:49436729-49436904 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 410-584 |
| Cow position: | chr18:1129275-1129443 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 413-588 |
| Cow position: | chr18:28085959-28086133 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 427-588 |
| Cow position: | chr18:1195874-1196026 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 427-588 |
| Cow position: | chr18:12078705-12078546 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 427-588 |
| Cow position: | chr18:51885702-51885849 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 432-588 |
| Cow position: | chr18:19213461-19213306 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 437-583 |
| Cow position: | chr18:26667686-26667826 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 441-587 |
| Cow position: | chr18:1740713-1740566 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 445-588 |
| Cow position: | chr18:32371708-32371568 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 455-584 |
| Cow position: | chr18:35471140-35471011 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 460-588 |
| Cow position: | chr18:32286651-32286776 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 484-588 |
| Cow position: | chr18:23503389-23503287 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.