Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 9-277 |
| Cow position: | chr19:38067342-38067619 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 9-314 |
| Cow position: | chr19:9115821-9115495 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 169 |
| Conread position: | 9-318 |
| Cow position: | chr19:17803627-17803935 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 9-318 |
| Cow position: | chr19:27209486-27209176 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 43-292 |
| Cow position: | chr19:28596329-28596583 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 43-300 |
| Cow position: | chr19:207452-207715 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 48-300 |
| Cow position: | chr19:48875431-48875682 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 87-291 |
| Cow position: | chr19:22512249-22512451 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr19:890192-889989 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 87-298 |
| Cow position: | chr19:5902031-5902240 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr19:7345038-7345247 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr19:7480931-7480721 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr19:8206993-8206784 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 87-298 |
| Cow position: | chr19:24734147-24734356 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr19:55843004-55843217 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 87-299 |
| Cow position: | chr19:29393346-29393556 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-319 |
| Cow position: | chr19:12553228-12552998 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 145-319 |
| Cow position: | chr19:36101705-36101532 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 155 |
| Conread position: | 406-535 |
| Cow position: | chr19:22670464-22670335 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 406-586 |
| Cow position: | chr19:25846709-25846881 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 406-587 |
| Cow position: | chr19:6478421-6478237 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-588 |
| Cow position: | chr19:28560422-28560232 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 406-588 |
| Cow position: | chr19:36388540-36388363 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 407-556 |
| Cow position: | chr19:30188389-30188236 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-564 |
| Cow position: | chr19:35026772-35026617 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 407-584 |
| Cow position: | chr19:4548257-4548079 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 407-586 |
| Cow position: | chr19:41504366-41504544 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 407-588 |
| Cow position: | chr19:6362681-6362863 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 407-588 |
| Cow position: | chr19:14534082-14533901 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-588 |
| Cow position: | chr19:28605956-28605775 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 407-588 |
| Cow position: | chr19:30051609-30051433 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 407-588 |
| Cow position: | chr19:30385165-30385347 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 88 |
| Conread position: | 407-588 |
| Cow position: | chr19:30746811-30746998 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 407-588 |
| Cow position: | chr19:33590116-33590299 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 407-588 |
| Cow position: | chr19:47772421-47772597 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 408-570 |
| Cow position: | chr19:13448561-13448724 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 408-588 |
| Cow position: | chr19:30880213-30880395 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 150 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 410-546 |
| Cow position: | chr19:36479234-36479365 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 410-587 |
| Cow position: | chr19:30349828-30349659 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 410-588 |
| Cow position: | chr19:4600908-4601081 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 410-588 |
| Cow position: | chr19:55418454-55418623 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 410-588 |
| Cow position: | chr19:55898435-55898613 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 413-587 |
| Cow position: | chr19:35826802-35826978 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 413-588 |
| Cow position: | chr19:425893-425729 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 426-588 |
| Cow position: | chr19:41554675-41554833 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 427-558 |
| Cow position: | chr19:12130804-12130672 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 427-588 |
| Cow position: | chr19:12478130-12477969 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-588 |
| Cow position: | chr19:3082519-3082677 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 432-588 |
| Cow position: | chr19:39299470-39299320 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 459-587 |
| Cow position: | chr19:33955208-33955337 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 480-588 |
| Cow position: | chr19:37601689-37601582 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.