Cow genome map

Conread name: Ss1.1-rpigcf0_008825.5

Conread position: 1-310
Cow position: chr2:41782974-41783299 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 224
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 123

Conread position: 8-299
Cow position: chr2:2050060-2050350 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 53

Conread position: 9-230
Cow position: chr2:24612904-24612672 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 10

Conread position: 9-250
Cow position: chr2:53969727-53969480 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 31, 89

Conread position: 9-261
Cow position: chr2:25717668-25717922 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 76

Conread position: 9-318
Cow position: chr2:24128967-24128653 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 92

Conread position: 9-319
Cow position: chr2:7328298-7328611 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 114

Conread position: 9-319
Cow position: chr2:43811709-43812029 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 35, 111

Conread position: 9-319
Cow position: chr2:54900449-54900761 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 34

Conread position: 9-319
Cow position: chr2:55474890-55474565 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 34, 115

Conread position: 9-320
Cow position: chr2:33394064-33393756 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 27, 68

Conread position: 17-319
Cow position: chr2:37603140-37602831 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 107

Conread position: 40-273
Cow position: chr2:39606537-39606306 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 54

Conread position: 43-292
Cow position: chr2:50079960-50080215 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 62

Conread position: 43-292
Cow position: chr2:53003805-53003553 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 171
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 59

Conread position: 43-298
Cow position: chr2:14208438-14208182 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 172
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 29

Conread position: 43-298
Cow position: chr2:17266033-17265776 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 18

Conread position: 43-313
Cow position: chr2:24517244-24517518 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 72

Conread position: 61-278
Cow position: chr2:29757964-29757745 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 51

Conread position: 87-291
Cow position: chr2:4834154-4833952 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-292
Cow position: chr2:8121144-8121347 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 72, 10

Conread position: 87-292
Cow position: chr2:25886106-25885897 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 10

Conread position: 87-292
Cow position: chr2:81259575-81259778 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-294
Cow position: chr2:54739933-54740138 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 10

Conread position: 87-298
Cow position: chr2:3622969-3623178 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 10

Conread position: 87-298
Cow position: chr2:10123601-10123392 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr2:10609340-10609131 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 12

Conread position: 87-298
Cow position: chr2:34619292-34619501 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr2:39424380-39424589 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 72, 12

Conread position: 87-298
Cow position: chr2:39935376-39935585 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr2:44093815-44094024 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 21

Conread position: 87-298
Cow position: chr2:74238215-74238006 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr2:74469609-74469400 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 10

Conread position: 87-299
Cow position: chr2:4741813-4742023 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-300
Cow position: chr2:13067557-13067346 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 87-301
Cow position: chr2:1187417-1187205 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-314
Cow position: chr2:70499178-70498956 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 11

Conread position: 87-319
Cow position: chr2:53542388-53542617 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 157
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 12

Conread position: 87-321
Cow position: chr2:7370118-7370347 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 10

Conread position: 109-318
Cow position: chr2:54425662-54425453 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 95

Conread position: 111-298
Cow position: chr2:4400661-4400473 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 41

Conread position: 111-298
Cow position: chr2:9962601-9962413 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 41

Conread position: 405-588
Cow position: chr2:18759887-18760073 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 70

Conread position: 406-573
Cow position: chr2:53716574-53716415 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 407-563
Cow position: chr2:39412065-39412213 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 407-565
Cow position: chr2:49441241-49441400 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 24, 70

Conread position: 407-571
Cow position: chr2:73205025-73204859 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 407-573
Cow position: chr2:41491052-41491216 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 138
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 151, 0

Conread position: 407-584
Cow position: chr2:20534219-20534042 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 71, 48

Conread position: 407-584
Cow position: chr2:56822922-56822747 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 101, 0

Conread position: 407-586
Cow position: chr2:9709874-9710051 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 407-586
Cow position: chr2:13048616-13048795 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 17, 33

Conread position: 407-586
Cow position: chr2:15273471-15273301 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 40

Conread position: 407-586
Cow position: chr2:40370356-40370191 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 407-586
Cow position: chr2:47746633-47746807 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 407-587
Cow position: chr2:23811523-23811688 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 407-587
Cow position: chr2:46130523-46130342 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 75

Conread position: 407-587
Cow position: chr2:52183364-52183537 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 25, 0

Conread position: 407-587
Cow position: chr2:53280786-53280971 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 407-587
Cow position: chr2:63287735-63287566 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 407-588
Cow position: chr2:3544189-3544009 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 17

Conread position: 407-588
Cow position: chr2:5767635-5767462 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 407-588
Cow position: chr2:14037305-14037134 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 407-588
Cow position: chr2:18274255-18274076 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 150
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 165, 0

Conread position: 407-588
Cow position: chr2:31420406-31420591 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 155, 42

Conread position: 407-588
Cow position: chr2:68962688-68962520 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 408-557
Cow position: chr2:80603918-80603768 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 408-584
Cow position: chr2:23062507-23062336 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 31, 0

Conread position: 408-588
Cow position: chr2:7365810-7365634 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 5

Conread position: 408-588
Cow position: chr2:38805940-38805761 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 408-588
Cow position: chr2:74387720-74387537 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 23, 54

Conread position: 409-571
Cow position: chr2:19130566-19130721 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 409-586
Cow position: chr2:62463584-62463404 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 0

Conread position: 410-588
Cow position: chr2:13685010-13685180 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 75, 0

Conread position: 410-588
Cow position: chr2:19750744-19750920 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 21, 87

Conread position: 410-588
Cow position: chr2:43344877-43344696 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 24, 0

Conread position: 410-588
Cow position: chr2:82827964-82827789 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 411-587
Cow position: chr2:41417820-41417649 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 126

Conread position: 411-587
Cow position: chr2:51826751-51826585 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 412-588
Cow position: chr2:78912392-78912216 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 21, 75

Conread position: 413-550
Cow position: chr2:3730527-3730660 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 413-552
Cow position: chr2:44983254-44983112 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 413-586
Cow position: chr2:3182100-3181928 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 413-588
Cow position: chr2:25112552-25112722 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 424-588
Cow position: chr2:33791054-33790892 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 73

Conread position: 427-538
Cow position: chr2:38583489-38583378 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 432-587
Cow position: chr2:69982789-69982945 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 52, 22

Conread position: 433-583
Cow position: chr2:12910624-12910774 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 433-588
Cow position: chr2:16522036-16522190 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 128
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 18, 8

Conread position: 435-584
Cow position: chr2:72599253-72599402 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 441-586
Cow position: chr2:33823189-33823048 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 441-588
Cow position: chr2:44197679-44197534 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 441-588
Cow position: chr2:59592563-59592415 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 445-586
Cow position: chr2:11736847-11736988 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 445-588
Cow position: chr2:12777130-12776987 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 109, 138

Conread position: 452-588
Cow position: chr2:71121693-71121829 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 459-583
Cow position: chr2:52347315-52347190 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 463-587
Cow position: chr2:37155541-37155419 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 463-588
Cow position: chr2:56017760-56017633 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 489-588
Cow position: chr2:7778996-7778897 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 491-586
Cow position: chr2:45501062-45500967 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 506-588
Cow position: chr2:77968038-77967956 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 74
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.