Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 9-317 |
| Cow position: | chr20:35160594-35160889 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 86 |
| Conread position: | 16-290 |
| Cow position: | chr20:6476398-6476687 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 242 |
| Conread position: | 43-292 |
| Cow position: | chr20:35159665-35159412 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 43-299 |
| Cow position: | chr20:26800369-26800107 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 43-301 |
| Cow position: | chr20:28111883-28111628 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 43-319 |
| Cow position: | chr20:30688790-30689072 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 44-269 |
| Cow position: | chr20:9621712-9621936 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 44-319 |
| Cow position: | chr20:7810919-7810643 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 115, 108 |
| Conread position: | 49-216 |
| Cow position: | chr20:23140506-23140334 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 61-298 |
| Cow position: | chr20:28444412-28444172 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 61-309 |
| Cow position: | chr20:7552456-7552213 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 87-291 |
| Cow position: | chr20:39234198-39234400 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 87-292 |
| Cow position: | chr20:15116777-15116979 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-298 |
| Cow position: | chr20:8970925-8970717 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr20:15799993-15799784 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 87-298 |
| Cow position: | chr20:24542393-24542602 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr20:24568302-24568093 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr20:30578830-30579039 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr20:34231889-34231680 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr20:40007688-40007479 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-319 |
| Cow position: | chr20:13506591-13506361 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-319 |
| Cow position: | chr20:35093507-35093735 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 92-298 |
| Cow position: | chr20:28247280-28247074 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 101-296 |
| Cow position: | chr20:19261607-19261411 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 111-291 |
| Cow position: | chr20:30146423-30146604 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 111-319 |
| Cow position: | chr20:30385257-30385048 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 112-272 |
| Cow position: | chr20:2002966-2002809 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 394-588 |
| Cow position: | chr20:22420360-22420169 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 406-584 |
| Cow position: | chr20:20064201-20064023 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 406-588 |
| Cow position: | chr20:23400736-23400907 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 407-556 |
| Cow position: | chr20:7284309-7284456 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 407-564 |
| Cow position: | chr20:20072095-20071937 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 407-584 |
| Cow position: | chr20:3376856-3376676 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 407-584 |
| Cow position: | chr20:16582831-16582657 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 407-584 |
| Cow position: | chr20:21301013-21300837 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 407-586 |
| Cow position: | chr20:887381-887558 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 407-586 |
| Cow position: | chr20:5668326-5668145 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 407-586 |
| Cow position: | chr20:15147541-15147363 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 407-587 |
| Cow position: | chr20:2858800-2858971 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-588 |
| Cow position: | chr20:13588701-13588521 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 407-588 |
| Cow position: | chr20:17473138-17472959 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 148 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 407-588 |
| Cow position: | chr20:22919697-22919526 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 407-588 |
| Cow position: | chr20:23421905-23421731 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 82 |
| Conread position: | 407-588 |
| Cow position: | chr20:30285818-30285996 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 407-588 |
| Cow position: | chr20:31563527-31563346 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 407-588 |
| Cow position: | chr20:33154530-33154347 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 166 |
| Conread position: | 407-588 |
| Cow position: | chr20:36988143-36987960 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 410-559 |
| Cow position: | chr20:13790454-13790601 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 410-586 |
| Cow position: | chr20:20350341-20350163 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 410-588 |
| Cow position: | chr20:14864411-14864236 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 410-588 |
| Cow position: | chr20:21403627-21403806 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 411-577 |
| Cow position: | chr20:31098167-31098330 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 413-588 |
| Cow position: | chr20:36373809-36373630 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 437-585 |
| Cow position: | chr20:12118530-12118378 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 441-588 |
| Cow position: | chr20:7801646-7801501 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 441-588 |
| Cow position: | chr20:30243696-30243837 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 452-585 |
| Cow position: | chr20:4851792-4851924 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 453-588 |
| Cow position: | chr20:13252888-13252751 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 453-588 |
| Cow position: | chr20:15492284-15492419 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 459-588 |
| Cow position: | chr20:9036095-9035962 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 460-558 |
| Cow position: | chr20:25991201-25991103 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 460-586 |
| Cow position: | chr20:27976963-27976838 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 460-588 |
| Cow position: | chr20:9071390-9071261 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 462-588 |
| Cow position: | chr20:36706833-36706708 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.