Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 9-318 |
| Cow position: | chr23:10131585-10131272 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 30-292 |
| Cow position: | chr23:2437346-2437082 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 61-319 |
| Cow position: | chr23:5624706-5624445 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 87-291 |
| Cow position: | chr23:2368722-2368923 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-291 |
| Cow position: | chr23:3709302-3709504 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-292 |
| Cow position: | chr23:30634697-30634494 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-298 |
| Cow position: | chr23:609626-609835 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr23:1248630-1248421 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr23:3301753-3301962 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 87-298 |
| Cow position: | chr23:4532800-4532591 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-298 |
| Cow position: | chr23:14216326-14216118 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-298 |
| Cow position: | chr23:19317385-19317594 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr23:21008707-21008498 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-299 |
| Cow position: | chr23:4516438-4516648 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 87-319 |
| Cow position: | chr23:20153324-20153094 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 91-273 |
| Cow position: | chr23:13820844-13820670 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 112-298 |
| Cow position: | chr23:27146372-27146186 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 406-533 |
| Cow position: | chr23:15694201-15694071 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 406-586 |
| Cow position: | chr23:24400777-24400592 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 407-565 |
| Cow position: | chr23:14572806-14572964 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-584 |
| Cow position: | chr23:7571261-7571082 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 407-585 |
| Cow position: | chr23:39822876-39823051 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 407-586 |
| Cow position: | chr23:2783966-2783789 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 144, 34 |
| Conread position: | 407-586 |
| Cow position: | chr23:37036441-37036275 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-587 |
| Cow position: | chr23:23917286-23917466 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-588 |
| Cow position: | chr23:1682481-1682659 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 407-588 |
| Cow position: | chr23:9425796-9425617 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-588 |
| Cow position: | chr23:15147589-15147417 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 407-588 |
| Cow position: | chr23:34514475-34514298 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 407-588 |
| Cow position: | chr23:36484011-36483842 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 408-587 |
| Cow position: | chr23:25078797-25078618 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 409-556 |
| Cow position: | chr23:23285500-23285647 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 409-587 |
| Cow position: | chr23:25409238-25409405 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 409-588 |
| Cow position: | chr23:35654645-35654463 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 410-586 |
| Cow position: | chr23:39069807-39069629 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 410-588 |
| Cow position: | chr23:2330364-2330192 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 410-588 |
| Cow position: | chr23:16171132-16171311 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 410-588 |
| Cow position: | chr23:20023880-20024058 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 410-588 |
| Cow position: | chr23:36674359-36674187 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 130, 39 |
| Conread position: | 411-585 |
| Cow position: | chr23:30691612-30691440 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 411-586 |
| Cow position: | chr23:5258746-5258920 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 430-587 |
| Cow position: | chr23:13788247-13788087 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 432-588 |
| Cow position: | chr23:5265110-5264961 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 432-588 |
| Cow position: | chr23:6963739-6963590 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 432-588 |
| Cow position: | chr23:16479464-16479311 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 436-582 |
| Cow position: | chr23:9724008-9723866 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 440-575 |
| Cow position: | chr23:32845577-32845443 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.