Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 11-319 |
| Cow position: | chr24:6200562-6200878 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 35-298 |
| Cow position: | chr24:10879484-10879750 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 43-290 |
| Cow position: | chr24:3162408-3162661 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 43-291 |
| Cow position: | chr24:36779210-36779463 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 43-299 |
| Cow position: | chr24:16081548-16081287 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 44-301 |
| Cow position: | chr24:30998464-30998210 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 61-298 |
| Cow position: | chr24:39412033-39412261 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 87-291 |
| Cow position: | chr24:6440743-6440945 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr24:17545215-17545418 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-294 |
| Cow position: | chr24:16559289-16559084 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr24:3850585-3850794 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 87-298 |
| Cow position: | chr24:15296105-15296314 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 87-298 |
| Cow position: | chr24:22974797-22975007 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr24:40551615-40551824 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 87-319 |
| Cow position: | chr24:12578511-12578741 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 87-319 |
| Cow position: | chr24:19688590-19688359 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 87-319 |
| Cow position: | chr24:22794549-22794779 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 88-318 |
| Cow position: | chr24:27586768-27586997 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 111-291 |
| Cow position: | chr24:36028503-36028322 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 407-580 |
| Cow position: | chr24:17762881-17762710 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 407-582 |
| Cow position: | chr24:37385981-37385809 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 407-586 |
| Cow position: | chr24:17417473-17417651 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 407-586 |
| Cow position: | chr24:35835650-35835472 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 407-587 |
| Cow position: | chr24:25934944-25935134 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 79, 169 |
| Conread position: | 407-587 |
| Cow position: | chr24:28598985-28598808 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 407-587 |
| Cow position: | chr24:31301293-31301113 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 407-588 |
| Cow position: | chr24:1295876-1295697 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 407-588 |
| Cow position: | chr24:19627806-19627998 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr24:33274240-33274419 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 407-588 |
| Cow position: | chr24:43350711-43350525 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 407-588 |
| Cow position: | chr24:43491316-43491141 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 408-588 |
| Cow position: | chr24:42817651-42817830 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 409-546 |
| Cow position: | chr24:31845431-31845294 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 410-554 |
| Cow position: | chr24:9867086-9866937 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 410-584 |
| Cow position: | chr24:44484007-44483838 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 410-585 |
| Cow position: | chr24:6177794-6177964 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 410-586 |
| Cow position: | chr24:16552620-16552441 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 157 |
| Conread position: | 410-588 |
| Cow position: | chr24:6423672-6423508 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 410-588 |
| Cow position: | chr24:42338771-42338950 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 411-588 |
| Cow position: | chr24:36550682-36550503 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 87 |
| Conread position: | 412-588 |
| Cow position: | chr24:14913183-14913012 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 432-588 |
| Cow position: | chr24:32579598-32579740 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 436-588 |
| Cow position: | chr24:30899406-30899256 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 441-588 |
| Cow position: | chr24:39384528-39384381 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-546 |
| Cow position: | chr24:26175340-26175436 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-588 |
| Cow position: | chr24:15476630-15476726 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.