Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 1-280 |
| Cow position: | chr25:19426220-19425940 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 117 |
| Conread position: | 8-298 |
| Cow position: | chr25:37232019-37231716 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 9-319 |
| Cow position: | chr25:25731155-25731455 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 81, 34 |
| Conread position: | 10-319 |
| Cow position: | chr25:18423312-18423625 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 21-319 |
| Cow position: | chr25:33207658-33207360 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 41-336 |
| Cow position: | chr25:16923500-16923207 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 116 |
| Conread position: | 43-292 |
| Cow position: | chr25:24655531-24655279 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 61-319 |
| Cow position: | chr25:18071894-18072148 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 82-319 |
| Cow position: | chr25:17657307-17657538 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 87-272 |
| Cow position: | chr25:19337634-19337451 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-291 |
| Cow position: | chr25:17586332-17586131 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr25:12939520-12939317 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 87-292 |
| Cow position: | chr25:20633454-20633657 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 87-292 |
| Cow position: | chr25:28862558-28862762 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr25:26781395-26781186 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 111-298 |
| Cow position: | chr25:29803037-29802849 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 133 |
| Conread position: | 145-298 |
| Cow position: | chr25:20368819-20368973 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 405-588 |
| Cow position: | chr25:11526631-11526450 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 111, 34 |
| Conread position: | 406-570 |
| Cow position: | chr25:13486731-13486895 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 103 |
| Conread position: | 406-581 |
| Cow position: | chr25:18205909-18205735 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 165, 32 |
| Conread position: | 406-584 |
| Cow position: | chr25:16940454-16940272 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 407-586 |
| Cow position: | chr25:8618010-8617838 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 407-587 |
| Cow position: | chr25:8447865-8448035 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 407-587 |
| Cow position: | chr25:14279848-14280019 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-587 |
| Cow position: | chr25:16240220-16240036 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 407-588 |
| Cow position: | chr25:10010146-10009975 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 407-588 |
| Cow position: | chr25:13216181-13216358 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 407-588 |
| Cow position: | chr25:13704418-13704599 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-588 |
| Cow position: | chr25:16687704-16687525 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 407-588 |
| Cow position: | chr25:33002158-33002337 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 407-588 |
| Cow position: | chr25:40833025-40832847 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 409-579 |
| Cow position: | chr25:17473073-17473237 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 409-588 |
| Cow position: | chr25:13123628-13123801 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 409-588 |
| Cow position: | chr25:15564595-15564768 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 409-588 |
| Cow position: | chr25:19686344-19686164 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 410-588 |
| Cow position: | chr25:5377233-5377062 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 410-588 |
| Cow position: | chr25:20624211-20624389 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 411-554 |
| Cow position: | chr25:38358494-38358634 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 411-586 |
| Cow position: | chr25:20423280-20423456 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 433-587 |
| Cow position: | chr25:9785614-9785461 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 448-587 |
| Cow position: | chr25:5534014-5533878 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 467-588 |
| Cow position: | chr25:3685711-3685590 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 41 |
Show alignments to all cow chromosomes.