Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 1-272 |
| Cow position: | chr26:1471266-1470992 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 8-298 |
| Cow position: | chr26:11841082-11840795 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 9-296 |
| Cow position: | chr26:35421488-35421197 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 9-319 |
| Cow position: | chr26:15912490-15912811 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 9-319 |
| Cow position: | chr26:18778419-18778723 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 15-319 |
| Cow position: | chr26:8191005-8190703 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 40-300 |
| Cow position: | chr26:6425920-6426188 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 43-250 |
| Cow position: | chr26:32680865-32680656 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 43-292 |
| Cow position: | chr26:21823734-21823487 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 43-313 |
| Cow position: | chr26:3754928-3755193 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 43-319 |
| Cow position: | chr26:891984-892257 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 43-319 |
| Cow position: | chr26:35148978-35148702 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 61-298 |
| Cow position: | chr26:6321019-6321259 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 61-314 |
| Cow position: | chr26:19490126-19490379 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 87-272 |
| Cow position: | chr26:1389927-1390110 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-291 |
| Cow position: | chr26:35191604-35191402 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-298 |
| Cow position: | chr26:1347051-1346842 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr26:12585595-12585386 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr26:13183254-13183463 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr26:26285806-26286015 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-319 |
| Cow position: | chr26:3230411-3230641 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 88-287 |
| Cow position: | chr26:12258835-12258639 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 88-292 |
| Cow position: | chr26:14488311-14488109 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 111-287 |
| Cow position: | chr26:9115001-9115178 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 111-298 |
| Cow position: | chr26:18804399-18804211 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 400-587 |
| Cow position: | chr26:14509431-14509246 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 405-587 |
| Cow position: | chr26:22161116-22160940 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 406-587 |
| Cow position: | chr26:16214683-16214868 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-585 |
| Cow position: | chr26:34037811-34037635 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 138 |
| Conread position: | 407-586 |
| Cow position: | chr26:21013785-21013962 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 407-587 |
| Cow position: | chr26:30602686-30602507 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 407-588 |
| Cow position: | chr26:5717923-5717744 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 407-588 |
| Cow position: | chr26:15632902-15633082 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 407-588 |
| Cow position: | chr26:19493159-19493338 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 407-588 |
| Cow position: | chr26:28421334-28421152 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 407-588 |
| Cow position: | chr26:30011359-30011188 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 408-585 |
| Cow position: | chr26:14363675-14363499 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 408-588 |
| Cow position: | chr26:4663664-4663487 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 410-565 |
| Cow position: | chr26:6828409-6828563 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 410-586 |
| Cow position: | chr26:5794121-5794296 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 410-588 |
| Cow position: | chr26:5196923-5197101 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 410-588 |
| Cow position: | chr26:12872142-12872315 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 411-588 |
| Cow position: | chr26:19958266-19958445 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 147 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 413-586 |
| Cow position: | chr26:13346091-13346261 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 433-588 |
| Cow position: | chr26:1068992-1068840 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 7, 71 |
| Conread position: | 433-588 |
| Cow position: | chr26:33949032-33948878 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 441-586 |
| Cow position: | chr26:2362490-2362631 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 441-587 |
| Cow position: | chr26:4798369-4798514 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 450-587 |
| Cow position: | chr26:14081845-14081975 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 459-588 |
| Cow position: | chr26:4559751-4559625 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.