Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 3-277 |
| Cow position: | chr27:28185797-28185515 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 4-277 |
| Cow position: | chr27:28181722-28181441 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 9-319 |
| Cow position: | chr27:23905615-23905932 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 10-319 |
| Cow position: | chr27:6380427-6380105 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 113 |
| Conread position: | 12-271 |
| Cow position: | chr27:19165920-19165650 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 12-301 |
| Cow position: | chr27:20253116-20252825 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 38-310 |
| Cow position: | chr27:8068451-8068177 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 43-245 |
| Cow position: | chr27:29006209-29006417 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 43-298 |
| Cow position: | chr27:7667641-7667890 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 30 |
| Conread position: | 43-298 |
| Cow position: | chr27:13353156-13353413 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 61-300 |
| Cow position: | chr27:4978467-4978703 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 67-298 |
| Cow position: | chr27:27849146-27849377 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 87-291 |
| Cow position: | chr27:1082264-1082062 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr27:13900792-13900995 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr27:17422490-17422697 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 87-298 |
| Cow position: | chr27:29447178-29446969 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 88-292 |
| Cow position: | chr27:3232635-3232433 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 406-586 |
| Cow position: | chr27:18179127-18179306 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 407-567 |
| Cow position: | chr27:12547819-12547979 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 407-574 |
| Cow position: | chr27:15211308-15211136 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-587 |
| Cow position: | chr27:4921906-4922087 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 407-587 |
| Cow position: | chr27:18573445-18573263 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 407-588 |
| Cow position: | chr27:7860216-7860397 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 407-588 |
| Cow position: | chr27:12000118-12000300 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 147 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 407-588 |
| Cow position: | chr27:13861034-13861203 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 407-588 |
| Cow position: | chr27:18589290-18589115 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 407-588 |
| Cow position: | chr27:31238434-31238616 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 407-588 |
| Cow position: | chr27:31524083-31523906 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 408-584 |
| Cow position: | chr27:3935155-3935338 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 408-584 |
| Cow position: | chr27:30889344-30889517 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 408-588 |
| Cow position: | chr27:9261370-9261184 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 15, 181 |
| Conread position: | 408-588 |
| Cow position: | chr27:31376145-31375972 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 409-588 |
| Cow position: | chr27:18057047-18056870 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 410-588 |
| Cow position: | chr27:18546462-18546295 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 411-588 |
| Cow position: | chr27:11021306-11021136 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 416-588 |
| Cow position: | chr27:7183764-7183942 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 441-582 |
| Cow position: | chr27:1540748-1540881 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 441-586 |
| Cow position: | chr27:2246517-2246372 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-588 |
| Cow position: | chr27:281264-281391 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 468-588 |
| Cow position: | chr27:5539353-5539472 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 488-585 |
| Cow position: | chr27:5531417-5531514 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.