Cow genome map

Conread name: Ss1.1-rpigcf0_008825.5

Conread position: 1-259
Cow position: chr7:56999353-56999089 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 108

Conread position: 1-280
Cow position: chr7:61005568-61005860 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 121

Conread position: 1-298
Cow position: chr7:59085789-59086094 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 9, 121

Conread position: 1-314
Cow position: chr7:41324328-41324008 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 228
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 120

Conread position: 8-287
Cow position: chr7:61444707-61444990 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 108

Conread position: 8-298
Cow position: chr7:56664-56965 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 35, 7

Conread position: 9-292
Cow position: chr7:55635219-55634940 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 62, 34

Conread position: 11-300
Cow position: chr7:58441430-58441724 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 107

Conread position: 43-319
Cow position: chr7:26927263-26926982 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 189
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 66

Conread position: 45-314
Cow position: chr7:66274195-66273920 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 25, 61

Conread position: 48-314
Cow position: chr7:30042904-30043172 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 22, 65

Conread position: 49-311
Cow position: chr7:30681888-30682154 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 178
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 71

Conread position: 60-296
Cow position: chr7:23913174-23913412 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 43, 30

Conread position: 60-298
Cow position: chr7:61832559-61832320 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 46

Conread position: 61-292
Cow position: chr7:194970-194736 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 41

Conread position: 61-292
Cow position: chr7:5305052-5304818 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 35

Conread position: 61-292
Cow position: chr7:14135916-14135682 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 41

Conread position: 61-292
Cow position: chr7:21989568-21989802 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 41

Conread position: 61-298
Cow position: chr7:33334388-33334622 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 39

Conread position: 69-273
Cow position: chr7:42504992-42505202 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 17, 47

Conread position: 87-272
Cow position: chr7:19181978-19182161 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-290
Cow position: chr7:24805528-24805327 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 10

Conread position: 87-292
Cow position: chr7:443295-443092 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 10

Conread position: 87-292
Cow position: chr7:45945890-45945687 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr7:12947-12738 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 21

Conread position: 87-298
Cow position: chr7:113581-113790 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 11

Conread position: 87-298
Cow position: chr7:1331449-1331240 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr7:20796493-20796284 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 10

Conread position: 87-298
Cow position: chr7:55964369-55964576 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 13

Conread position: 87-300
Cow position: chr7:3128269-3128480 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 12

Conread position: 87-319
Cow position: chr7:55041478-55041708 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 10

Conread position: 87-325
Cow position: chr7:60741974-60741738 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 10

Conread position: 87-330
Cow position: chr7:66299188-66298948 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 12

Conread position: 88-298
Cow position: chr7:3297713-3297504 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 9

Conread position: 104-317
Cow position: chr7:12483182-12483395 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 199

Conread position: 111-298
Cow position: chr7:54187424-54187236 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 41

Conread position: 400-588
Cow position: chr7:43257631-43257820 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 33, 183

Conread position: 406-584
Cow position: chr7:28010247-28010067 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 80

Conread position: 406-587
Cow position: chr7:56356626-56356448 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 45

Conread position: 406-588
Cow position: chr7:68366798-68366614 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 59

Conread position: 407-551
Cow position: chr7:30027584-30027732 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 407-557
Cow position: chr7:42221975-42221826 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 26, 61

Conread position: 407-575
Cow position: chr7:45063970-45063804 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 64

Conread position: 407-583
Cow position: chr7:62516457-62516629 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 27, 49

Conread position: 407-585
Cow position: chr7:29377704-29377530 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 26, 49

Conread position: 407-585
Cow position: chr7:54060395-54060207 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 407-585
Cow position: chr7:59844902-59845077 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 9, 21

Conread position: 407-586
Cow position: chr7:20104564-20104382 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 23, 13

Conread position: 407-586
Cow position: chr7:63547332-63547169 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 407-587
Cow position: chr7:32589251-32589438 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 24, 127

Conread position: 407-588
Cow position: chr7:11592779-11592605 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 407-588
Cow position: chr7:43004831-43005012 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 14, 118

Conread position: 407-588
Cow position: chr7:46216494-46216675 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 407-588
Cow position: chr7:48335045-48334876 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 408-587
Cow position: chr7:185331-185509 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 31

Conread position: 408-587
Cow position: chr7:52131573-52131754 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 23, 65

Conread position: 408-587
Cow position: chr7:61426022-61426200 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 146
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 25, 90

Conread position: 408-588
Cow position: chr7:40622632-40622803 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 410-588
Cow position: chr7:62048862-62049037 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 413-585
Cow position: chr7:20288803-20288638 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 413-588
Cow position: chr7:27765710-27765877 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 20

Conread position: 415-588
Cow position: chr7:67499152-67499320 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 50

Conread position: 418-588
Cow position: chr7:56664518-56664680 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 164, 21

Conread position: 420-573
Cow position: chr7:40615965-40616103 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 424-588
Cow position: chr7:8893583-8893419 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 432-588
Cow position: chr7:40643467-40643624 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 12, 24

Conread position: 432-588
Cow position: chr7:59204756-59204911 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 0

Conread position: 433-588
Cow position: chr7:12920172-12920022 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 434-561
Cow position: chr7:5701398-5701525 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 434-585
Cow position: chr7:48413600-48413448 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 442-588
Cow position: chr7:48014704-48014845 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 32, 23

Conread position: 448-571
Cow position: chr7:33339608-33339729 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 449-585
Cow position: chr7:65519625-65519489 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 450-583
Cow position: chr7:53356219-53356089 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 450-584
Cow position: chr7:45099716-45099855 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 459-584
Cow position: chr7:42555504-42555631 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 462-587
Cow position: chr7:31441617-31441496 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 467-588
Cow position: chr7:24883508-24883387 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 468-584
Cow position: chr7:11188807-11188921 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 489-588
Cow position: chr7:37259659-37259559 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 0

Show alignments to all cow chromosomes.