Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 8-257 |
| Cow position: | chr8:11795033-11795278 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 9-308 |
| Cow position: | chr8:6377801-6377507 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 9-319 |
| Cow position: | chr8:8103244-8102926 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 9-319 |
| Cow position: | chr8:27953949-27953631 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 10-292 |
| Cow position: | chr8:39460681-39460970 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 92 |
| Conread position: | 32-317 |
| Cow position: | chr8:56481682-56481391 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 39-308 |
| Cow position: | chr8:6258892-6258617 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 194 |
| Conread position: | 40-265 |
| Cow position: | chr8:41746458-41746231 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 40-319 |
| Cow position: | chr8:12669675-12669399 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 41-292 |
| Cow position: | chr8:13736644-13736898 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 43-291 |
| Cow position: | chr8:13831838-13831584 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 43-292 |
| Cow position: | chr8:5020106-5020358 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 43-298 |
| Cow position: | chr8:1322116-1322377 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 119 |
| Conread position: | 43-317 |
| Cow position: | chr8:22380715-22380436 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 43-319 |
| Cow position: | chr8:45070029-45070309 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 61-292 |
| Cow position: | chr8:3853916-3853678 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 61-292 |
| Cow position: | chr8:4689518-4689752 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 61-292 |
| Cow position: | chr8:33898800-33898567 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 87-288 |
| Cow position: | chr8:7051580-7051779 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr8:25413760-25413963 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-292 |
| Cow position: | chr8:47659182-47658979 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr8:1468275-1468484 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr8:8514928-8514719 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr8:12446247-12446038 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr8:26869174-26869381 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 87-298 |
| Cow position: | chr8:26878690-26878899 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr8:50430992-50430783 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 87-299 |
| Cow position: | chr8:51020010-51019800 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 87-319 |
| Cow position: | chr8:12287084-12287312 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-319 |
| Cow position: | chr8:33591509-33591738 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-321 |
| Cow position: | chr8:45304-45534 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 88-292 |
| Cow position: | chr8:8136213-8136011 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 111-319 |
| Cow position: | chr8:30157852-30158061 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 133 |
| Conread position: | 112-284 |
| Cow position: | chr8:21534819-21534993 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 406-588 |
| Cow position: | chr8:2975083-2975264 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 407-514 |
| Cow position: | chr8:54828655-54828762 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 407-549 |
| Cow position: | chr8:53891947-53892088 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 407-553 |
| Cow position: | chr8:19369089-19368954 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 407-556 |
| Cow position: | chr8:7102499-7102649 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 407-570 |
| Cow position: | chr8:48682079-48681912 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 407-571 |
| Cow position: | chr8:5874558-5874727 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 407-571 |
| Cow position: | chr8:30021510-30021348 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 407-571 |
| Cow position: | chr8:53359544-53359377 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 407-584 |
| Cow position: | chr8:28387363-28387186 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 161, 13 |
| Conread position: | 407-584 |
| Cow position: | chr8:31185652-31185826 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 407-585 |
| Cow position: | chr8:18883241-18883420 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 407-586 |
| Cow position: | chr8:6507861-6507680 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 407-586 |
| Cow position: | chr8:18801654-18801826 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 407-587 |
| Cow position: | chr8:22102776-22102594 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 407-588 |
| Cow position: | chr8:7103998-7103819 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 407-588 |
| Cow position: | chr8:18725618-18725803 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 407-588 |
| Cow position: | chr8:40273225-40273049 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 407-588 |
| Cow position: | chr8:40432451-40432272 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 408-586 |
| Cow position: | chr8:14617477-14617303 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 408-588 |
| Cow position: | chr8:6763864-6763688 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 408-588 |
| Cow position: | chr8:54159153-54159336 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 409-584 |
| Cow position: | chr8:47128984-47129160 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 409-588 |
| Cow position: | chr8:8480236-8480052 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 409-588 |
| Cow position: | chr8:51573267-51573086 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 410-556 |
| Cow position: | chr8:23440690-23440547 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 410-588 |
| Cow position: | chr8:10167250-10167421 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 410-588 |
| Cow position: | chr8:32327309-32327490 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 410-588 |
| Cow position: | chr8:32960181-32960009 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 410-588 |
| Cow position: | chr8:33818815-33818643 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 411-579 |
| Cow position: | chr8:51877537-51877365 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 19, 166 |
| Conread position: | 427-587 |
| Cow position: | chr8:51443142-51442986 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 429-588 |
| Cow position: | chr8:14703121-14702967 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 432-586 |
| Cow position: | chr8:19772910-19773064 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 433-580 |
| Cow position: | chr8:57404499-57404644 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 434-588 |
| Cow position: | chr8:9986234-9986388 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-588 |
| Cow position: | chr8:45686021-45685879 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 70 |
| Conread position: | 441-587 |
| Cow position: | chr8:19305490-19305635 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 441-588 |
| Cow position: | chr8:28049093-28048953 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 445-584 |
| Cow position: | chr8:33438250-33438388 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 445-588 |
| Cow position: | chr8:21900125-21900264 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 445-588 |
| Cow position: | chr8:32720367-32720505 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 449-588 |
| Cow position: | chr8:11794637-11794773 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 66 |
| Conread position: | 452-585 |
| Cow position: | chr8:15822087-15822221 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 459-587 |
| Cow position: | chr8:40570582-40570455 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 463-588 |
| Cow position: | chr8:7125593-7125468 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 467-586 |
| Cow position: | chr8:31888104-31888223 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-588 |
| Cow position: | chr8:32789789-32789691 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.