Cow genome map
| Conread name: | Ss1.1-rpigcf0_008825.5 |
| Conread position: | 9-267 |
| Cow position: | chr9:60491735-60491999 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 9-298 |
| Cow position: | chr9:55315601-55315311 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 9-319 |
| Cow position: | chr9:50063227-50062905 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 33-318 |
| Cow position: | chr9:40130643-40130936 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 43-193 |
| Cow position: | chr9:29372364-29372516 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 43-292 |
| Cow position: | chr9:9015824-9016079 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 43-319 |
| Cow position: | chr9:3052229-3051950 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 45-237 |
| Cow position: | chr9:8462450-8462252 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 61-300 |
| Cow position: | chr9:26054822-26055059 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 87-292 |
| Cow position: | chr9:28658247-28658044 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-292 |
| Cow position: | chr9:59480046-59479843 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 87-294 |
| Cow position: | chr9:32972169-32972374 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-298 |
| Cow position: | chr9:1071482-1071273 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr9:2856646-2856855 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 87-298 |
| Cow position: | chr9:6549979-6550188 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr9:9094309-9094518 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 87-298 |
| Cow position: | chr9:28785144-28785355 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr9:43225899-43225690 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 87-298 |
| Cow position: | chr9:47044749-47044958 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr9:47170850-47171063 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 87-298 |
| Cow position: | chr9:50840235-50840444 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 87-299 |
| Cow position: | chr9:44168392-44168601 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 87-319 |
| Cow position: | chr9:2873276-2873506 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 87-319 |
| Cow position: | chr9:37174603-37174373 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 88-292 |
| Cow position: | chr9:6365180-6365382 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 111-298 |
| Cow position: | chr9:1099417-1099605 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 406-576 |
| Cow position: | chr9:12199289-12199458 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 406-586 |
| Cow position: | chr9:2638702-2638876 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 406-588 |
| Cow position: | chr9:12183344-12183167 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 135 |
| Conread position: | 407-557 |
| Cow position: | chr9:4985745-4985897 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 407-557 |
| Cow position: | chr9:59114071-59113914 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 407-565 |
| Cow position: | chr9:19081981-19082134 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 407-570 |
| Cow position: | chr9:6557443-6557280 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 407-571 |
| Cow position: | chr9:45140512-45140347 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 407-583 |
| Cow position: | chr9:25502889-25503057 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-584 |
| Cow position: | chr9:1517674-1517842 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 407-584 |
| Cow position: | chr9:22376881-22376704 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 407-586 |
| Cow position: | chr9:1527181-1527359 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 407-586 |
| Cow position: | chr9:43609311-43609126 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 407-586 |
| Cow position: | chr9:62721221-62721399 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 407-588 |
| Cow position: | chr9:18570769-18570947 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 407-588 |
| Cow position: | chr9:26585336-26585158 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 407-588 |
| Cow position: | chr9:34763235-34763418 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 407-588 |
| Cow position: | chr9:40923031-40923214 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 408-582 |
| Cow position: | chr9:19835772-19835944 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 408-584 |
| Cow position: | chr9:15282791-15282618 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 118 |
| Conread position: | 408-586 |
| Cow position: | chr9:55203042-55203215 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 408-588 |
| Cow position: | chr9:39994142-39994323 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 409-579 |
| Cow position: | chr9:38698108-38697938 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 409-588 |
| Cow position: | chr9:14731956-14731780 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 409-588 |
| Cow position: | chr9:34188601-34188422 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 410-587 |
| Cow position: | chr9:41318366-41318546 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 410-587 |
| Cow position: | chr9:64606116-64606295 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 410-588 |
| Cow position: | chr9:6109526-6109349 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 410-588 |
| Cow position: | chr9:15855419-15855597 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 411-535 |
| Cow position: | chr9:14373731-14373605 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 411-556 |
| Cow position: | chr9:42366441-42366297 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 411-588 |
| Cow position: | chr9:35795044-35794871 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 414-579 |
| Cow position: | chr9:26033670-26033830 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 414-586 |
| Cow position: | chr9:56795112-56795277 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 425-573 |
| Cow position: | chr9:7670225-7670078 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 433-588 |
| Cow position: | chr9:13071952-13071802 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 434-588 |
| Cow position: | chr9:10003640-10003490 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 435-588 |
| Cow position: | chr9:8779652-8779798 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 437-586 |
| Cow position: | chr9:20394645-20394792 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 437-588 |
| Cow position: | chr9:5622453-5622604 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-586 |
| Cow position: | chr9:8234198-8234053 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-588 |
| Cow position: | chr9:416867-416721 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 441-588 |
| Cow position: | chr9:4834572-4834426 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 442-588 |
| Cow position: | chr9:23294228-23294083 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 445-587 |
| Cow position: | chr9:48076142-48076285 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 445-588 |
| Cow position: | chr9:33326196-33326054 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 460-588 |
| Cow position: | chr9:35527056-35526928 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-587 |
| Cow position: | chr9:52725822-52725937 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 470-588 |
| Cow position: | chr9:37301901-37301783 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.