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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_010910.5
        

               
Conread position:
               
148-357
               

               
Cow position:
               
chr1:15627751-15627961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
102, 88
               

               
Conread position:
               
148-415
               

               
Cow position:
               
chr1:4293809-4294063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
155-431
               

               
Cow position:
               
chr1:17291893-17291619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
167-526
               

               
Cow position:
               
chr1:45555132-45555490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 25
               

               
Conread position:
               
181-428
               

               
Cow position:
               
chr1:42174811-42174569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
183-528
               

               
Cow position:
               
chr1:84910855-84910521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
184-438
               

               
Cow position:
               
chr1:70026562-70026317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
184-447
               

               
Cow position:
               
chr1:70028358-70028618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
185-520
               

               
Cow position:
               
chr1:93110841-93110496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
187-484
               

               
Cow position:
               
chr1:3244633-3244923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
188-438
               

               
Cow position:
               
chr1:6795151-6794892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
188-447
               

               
Cow position:
               
chr1:45535485-45535745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 198
               

               
Conread position:
               
188-501
               

               
Cow position:
               
chr1:30413371-30413689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 82
               

               
Conread position:
               
188-520
               

               
Cow position:
               
chr1:25793655-25793322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
189-348
               

               
Cow position:
               
chr1:92010098-92010261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
189-365
               

               
Cow position:
               
chr1:81277417-81277243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
189-374
               

               
Cow position:
               
chr1:92551349-92551167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
189-380
               

               
Cow position:
               
chr1:70282720-70282911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
189-388
               

               
Cow position:
               
chr1:64189287-64189481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
189-404
               

               
Cow position:
               
chr1:4589696-4589474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
189-408
               

               
Cow position:
               
chr1:64939158-64938940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
189-413
               

               
Cow position:
               
chr1:77657850-77658073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
189-414
               

               
Cow position:
               
chr1:58419717-58419941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 191
               

               
Conread position:
               
189-428
               

               
Cow position:
               
chr1:15307819-15308056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
81, 113
               

               
Conread position:
               
189-429
               

               
Cow position:
               
chr1:8869880-8869639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 135
               

               
Conread position:
               
189-429
               

               
Cow position:
               
chr1:97820470-97820707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 151
               

               
Conread position:
               
189-433
               

               
Cow position:
               
chr1:56748374-56748625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
189-437
               

               
Cow position:
               
chr1:9444065-9443821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
189-437
               

               
Cow position:
               
chr1:15691122-15691363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
44, 56
               

               
Conread position:
               
189-438
               

               
Cow position:
               
chr1:31871205-31871458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 134
               

               
Conread position:
               
189-438
               

               
Cow position:
               
chr1:32341423-32341179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
189-438
               

               
Cow position:
               
chr1:70422085-70422333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 190
               

               
Conread position:
               
189-438
               

               
Cow position:
               
chr1:99807939-99807687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr1:26688693-26688433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr1:35844145-35843888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
121, 56
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr1:63596275-63596016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr1:66138101-66138359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 205
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr1:78791521-78791266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 57
               

               
Conread position:
               
189-458
               

               
Cow position:
               
chr1:6939854-6939586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
189-465
               

               
Cow position:
               
chr1:76096224-76096493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
189-466
               

               
Cow position:
               
chr1:56643804-56643530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
189-478
               

               
Cow position:
               
chr1:49131337-49131046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
86, 258
               

               
Conread position:
               
189-487
               

               
Cow position:
               
chr1:5162268-5161968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
189-502
               

               
Cow position:
               
chr1:20384836-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
189-505
               

               
Cow position:
               
chr1:90423301-90422979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 135
               

               
Conread position:
               
189-512
               

               
Cow position:
               
chr1:7657528-7657203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
189-512
               

               
Cow position:
               
chr1:10064194-10063870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 158
               

               
Conread position:
               
189-512
               

               
Cow position:
               
chr1:64251267-64250941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 71
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr1:85411364-85411696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
182, 78
               

               
Conread position:
               
189-523
               

               
Cow position:
               
chr1:23099683-23100022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
189-524
               

               
Cow position:
               
chr1:7143064-7142728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 72
               

               
Conread position:
               
189-526
               

               
Cow position:
               
chr1:6881439-6881111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
225, 80
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr1:71045539-71045873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 85
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr1:90868651-90868320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr1:98360624-98360277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 182
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr1:99642585-99642241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 188
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr1:100400417-100400080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
190-372
               

               
Cow position:
               
chr1:30041508-30041693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
190-405
               

               
Cow position:
               
chr1:50634620-50634401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
190-428
               

               
Cow position:
               
chr1:41954468-41954222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 187
               

               
Conread position:
               
190-447
               

               
Cow position:
               
chr1:60032813-60032561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
190-496
               

               
Cow position:
               
chr1:56073675-56073374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 122
               

               
Conread position:
               
190-520
               

               
Cow position:
               
chr1:41735839-41735501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
190-524
               

               
Cow position:
               
chr1:95765303-95764971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
191-351
               

               
Cow position:
               
chr1:43893712-43893871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
191-351
               

               
Cow position:
               
chr1:69445158-69445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
191-353
               

               
Cow position:
               
chr1:31348123-31347968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
191-354
               

               
Cow position:
               
chr1:14981332-14981172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
191-354
               

               
Cow position:
               
chr1:31414172-31414012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
191-357
               

               
Cow position:
               
chr1:44136675-44136514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
191-357
               

               
Cow position:
               
chr1:88338482-88338640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
191-363
               

               
Cow position:
               
chr1:89395379-89395559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
191-379
               

               
Cow position:
               
chr1:54163023-54162832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
191-383
               

               
Cow position:
               
chr1:81180193-81179994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
191-388
               

               
Cow position:
               
chr1:67008951-67008762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
191-389
               

               
Cow position:
               
chr1:86614648-86614843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 128
               

               
Conread position:
               
191-427
               

               
Cow position:
               
chr1:3340724-3340956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 136
               

               
Conread position:
               
191-432
               

               
Cow position:
               
chr1:11873570-11873338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
191-438
               

               
Cow position:
               
chr1:29975811-29975570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
191-438
               

               
Cow position:
               
chr1:47008817-47009062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
191-438
               

               
Cow position:
               
chr1:69415931-69415680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 219
               

               
Conread position:
               
191-438
               

               
Cow position:
               
chr1:76222904-76222659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 73
               

               
Conread position:
               
191-447
               

               
Cow position:
               
chr1:16962227-16961972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 196
               

               
Conread position:
               
191-447
               

               
Cow position:
               
chr1:46839381-46839643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
191-447
               

               
Cow position:
               
chr1:79278655-79278408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
191-447
               

               
Cow position:
               
chr1:82406766-82406511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
191-458
               

               
Cow position:
               
chr1:44769325-44769061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
164, 81
               

               
Conread position:
               
191-512
               

               
Cow position:
               
chr1:3962897-3962576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
211, 43
               

               
Conread position:
               
191-515
               

               
Cow position:
               
chr1:26702421-26702092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
191-517
               

               
Cow position:
               
chr1:53495250-53495577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 176
               

               
Conread position:
               
191-518
               

               
Cow position:
               
chr1:21787113-21787453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
191-520
               

               
Cow position:
               
chr1:19465849-19466170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
258, 49
               

               
Conread position:
               
191-520
               

               
Cow position:
               
chr1:31499414-31499744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
93, 81
               

               
Conread position:
               
191-520
               

               
Cow position:
               
chr1:52052917-52052598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
258, 64
               

               
Conread position:
               
191-524
               

               
Cow position:
               
chr1:34159618-34159959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
76, 174
               

               
Conread position:
               
191-524
               

               
Cow position:
               
chr1:46218370-46218696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
241, 54
               

               
Conread position:
               
191-525
               

               
Cow position:
               
chr1:8349524-8349200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
191-526
               

               
Cow position:
               
chr1:39069164-39068831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
262, 62
               

               
Conread position:
               
191-526
               

               
Cow position:
               
chr1:69264608-69264933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
191-527
               

               
Cow position:
               
chr1:36931946-36932279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
176, 76
               

               
Conread position:
               
191-527
               

               
Cow position:
               
chr1:51394206-51394543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
191-527
               

               
Cow position:
               
chr1:96472216-96472556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 201
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:11728964-11729302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 188
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:20000962-20000623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:34685981-34686302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:55357499-55357167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:56477381-56477721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
176, 56
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:77720445-77720122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
256, 70
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:83747726-83748068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 137
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr1:91066362-91066025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
257, 51
               

               
Conread position:
               
192-296
               

               
Cow position:
               
chr1:6240397-6240499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
192-306
               

               
Cow position:
               
chr1:81579551-81579667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
192-311
               

               
Cow position:
               
chr1:53650677-53650800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
192-312
               

               
Cow position:
               
chr1:26159644-26159521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-329
               

               
Cow position:
               
chr1:65637992-65638133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-334
               

               
Cow position:
               
chr1:40062236-40062381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
192-337
               

               
Cow position:
               
chr1:92198555-92198701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
192-338
               

               
Cow position:
               
chr1:98577265-98577409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
192-342
               

               
Cow position:
               
chr1:32631254-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
192-343
               

               
Cow position:
               
chr1:52488173-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
192-349
               

               
Cow position:
               
chr1:99118173-99118333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 145
               

               
Conread position:
               
192-351
               

               
Cow position:
               
chr1:84786558-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-352
               

               
Cow position:
               
chr1:52496569-52496730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
192-354
               

               
Cow position:
               
chr1:39702618-39702770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
192-356
               

               
Cow position:
               
chr1:56618891-56618727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
192-360
               

               
Cow position:
               
chr1:51531561-51531721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
192-360
               

               
Cow position:
               
chr1:80336459-80336290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 122
               

               
Conread position:
               
192-362
               

               
Cow position:
               
chr1:30504258-30504428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
192-363
               

               
Cow position:
               
chr1:1053376-1053548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
192-363
               

               
Cow position:
               
chr1:19545312-19545141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
192-364
               

               
Cow position:
               
chr1:68282584-68282761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
192-365
               

               
Cow position:
               
chr1:21092879-21093052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
192-365
               

               
Cow position:
               
chr1:71325459-71325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
103, 65
               

               
Conread position:
               
192-365
               

               
Cow position:
               
chr1:86484743-86484925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
192-370
               

               
Cow position:
               
chr1:56711834-56711654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
192-370
               

               
Cow position:
               
chr1:57698666-57698483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
192-373
               

               
Cow position:
               
chr1:15311656-15311837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
103, 128
               

               
Conread position:
               
192-373
               

               
Cow position:
               
chr1:75967224-75967399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr1:7442772-7442952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 80
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr1:23634113-23633942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 45
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr1:24597440-24597626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
136, 88
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr1:51628714-51628529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 117
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr1:71748219-71748041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr1:98708230-98708409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
192-379
               

               
Cow position:
               
chr1:95327365-95327178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 139
               

               
Conread position:
               
192-381
               

               
Cow position:
               
chr1:14379742-14379559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
192-381
               

               
Cow position:
               
chr1:46940074-46939883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
192-382
               

               
Cow position:
               
chr1:55194676-55194486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
121, 53
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr1:83982589-83982394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr1:85361643-85361837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
77, 146
               

               
Conread position:
               
192-388
               

               
Cow position:
               
chr1:11772293-11772091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 157
               

               
Conread position:
               
192-389
               

               
Cow position:
               
chr1:55260643-55260446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 137
               

               
Conread position:
               
192-389
               

               
Cow position:
               
chr1:81859444-81859244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
61, 141
               

               
Conread position:
               
192-393
               

               
Cow position:
               
chr1:79590888-79591094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
77, 183
               

               
Conread position:
               
192-394
               

               
Cow position:
               
chr1:26201008-26201208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
179, 69
               

               
Conread position:
               
192-396
               

               
Cow position:
               
chr1:3720639-3720443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
192-396
               

               
Cow position:
               
chr1:20287902-20288110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 204
               

               
Conread position:
               
192-411
               

               
Cow position:
               
chr1:33701908-33702120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
104, 71
               

               
Conread position:
               
192-411
               

               
Cow position:
               
chr1:78689721-78689938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
192-413
               

               
Cow position:
               
chr1:34000693-34000915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 181
               

               
Conread position:
               
192-413
               

               
Cow position:
               
chr1:50679498-50679275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
192-413
               

               
Cow position:
               
chr1:82861562-82861785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 184
               

               
Conread position:
               
192-413
               

               
Cow position:
               
chr1:90864512-90864289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
88, 185
               

               
Conread position:
               
192-414
               

               
Cow position:
               
chr1:91142369-91142143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
82, 172
               

               
Conread position:
               
192-415
               

               
Cow position:
               
chr1:56657826-56658039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
192-418
               

               
Cow position:
               
chr1:45673499-45673725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
192-418
               

               
Cow position:
               
chr1:100537598-100537812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
192-419
               

               
Cow position:
               
chr1:3661268-3661054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 84
               

               
Conread position:
               
192-421
               

               
Cow position:
               
chr1:95050312-95050075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
192-422
               

               
Cow position:
               
chr1:19998248-19998029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr1:85593560-85593791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
77, 37
               

               
Conread position:
               
192-425
               

               
Cow position:
               
chr1:12596113-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
192-425
               

               
Cow position:
               
chr1:22467718-22467952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 69
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:5409826-5409596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 80
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:20002448-20002209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 41
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:25886287-25886056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
203, 110
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:33811722-33811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:44836442-44836204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 158
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:61725325-61725095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:71946583-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:78794948-78794717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr1:99637992-99637761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
100, 154
               

               
Conread position:
               
192-430
               

               
Cow position:
               
chr1:98557996-98557763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
192-432
               

               
Cow position:
               
chr1:666148-666389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
97, 59
               

               
Conread position:
               
192-432
               

               
Cow position:
               
chr1:63905686-63905451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
192-432
               

               
Cow position:
               
chr1:71818674-71818439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 183
               

               
Conread position:
               
192-433
               

               
Cow position:
               
chr1:53540178-53540415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 125
               

               
Conread position:
               
192-433
               

               
Cow position:
               
chr1:78783334-78783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr1:874431-874680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr1:24655747-24655984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr1:29671736-29671495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 70
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr1:88652418-88652657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr1:101551245-101551490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chr1:43448035-43447801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
146, 42
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chr1:85596732-85596972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
192-437
               

               
Cow position:
               
chr1:1403685-1403453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
5, 48
               

               
Conread position:
               
192-437
               

               
Cow position:
               
chr1:3035205-3034971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
192-437
               

               
Cow position:
               
chr1:24235733-24235491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 170
               

               
Conread position:
               
192-437
               

               
Cow position:
               
chr1:102826026-102825793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:11853902-11853656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 189
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:29627127-29626883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
82, 193
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:31235144-31234902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 165
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:41181632-41181874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:55163710-55163948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:68995959-68996209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 195
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:71952875-71953105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:77620338-77620575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:82504754-82505005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
71, 189
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:100512383-100512638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 71
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr1:101915954-101916195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
87, 186
               

               
Conread position:
               
192-440
               

               
Cow position:
               
chr1:5873184-5872936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
109, 75
               

               
Conread position:
               
192-441
               

               
Cow position:
               
chr1:13548202-13547953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
192-442
               

               
Cow position:
               
chr1:95035568-95035315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
183, 114
               

               
Conread position:
               
192-443
               

               
Cow position:
               
chr1:88970847-88971089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
98, 80
               

               
Conread position:
               
192-443
               

               
Cow position:
               
chr1:98562948-98563196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
192-444
               

               
Cow position:
               
chr1:101547255-101546988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 240
               

               
Conread position:
               
192-445
               

               
Cow position:
               
chr1:68276194-68276452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 185
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:1916447-1916189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
141, 66
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:3429721-3429471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:10655265-10655520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
83, 190
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:21460655-21460912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:21508175-21508431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:21577592-21577847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 69
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:22448799-22448543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
175, 75
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:24729052-24728802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:26729515-26729756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:26896037-26895773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 69
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:31765609-31765336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:31934301-31934545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:34300760-34300513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:34856841-34856590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:42138654-42138896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 93
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:43839315-43839567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:48444395-48444156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:51968257-51968500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:52753378-52753122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:57396139-57395898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:60907149-60907415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:61735651-61735397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 165
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:62919964-62920206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
192, 27
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:63390986-63390729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 82
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:78091824-78092075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:81228552-81228296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:88618381-88618634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 151
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:89076848-89076595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:89485372-89485618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:89742224-89741962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 179
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:91816986-91816733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:92437203-92436951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:92963186-92963433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:96478483-96478738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
109, 62
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr1:102647481-102647235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
192-453
               

               
Cow position:
               
chr1:55135621-55135874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 54
               

               
Conread position:
               
192-457
               

               
Cow position:
               
chr1:56719105-56719351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
192-457
               

               
Cow position:
               
chr1:95687318-95687057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 149
               

               
Conread position:
               
192-467
               

               
Cow position:
               
chr1:12871219-12870949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
211, 68
               

               
Conread position:
               
192-477
               

               
Cow position:
               
chr1:61724237-61723949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
105, 207
               

               
Conread position:
               
192-481
               

               
Cow position:
               
chr1:77099750-77099475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
192-482
               

               
Cow position:
               
chr1:68217571-68217285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 78
               

               
Conread position:
               
192-487
               

               
Cow position:
               
chr1:57264199-57263920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
192-494
               

               
Cow position:
               
chr1:55146589-55146891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 93
               

               
Conread position:
               
192-494
               

               
Cow position:
               
chr1:90640812-90641121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
80, 210
               

               
Conread position:
               
192-500
               

               
Cow position:
               
chr1:91800818-91800499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
192-505
               

               
Cow position:
               
chr1:56634886-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
252, 80
               

               
Conread position:
               
192-505
               

               
Cow position:
               
chr1:81563521-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
192-506
               

               
Cow position:
               
chr1:45289086-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 66
               

               
Conread position:
               
192-507
               

               
Cow position:
               
chr1:73761564-73761255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
173, 77
               

               
Conread position:
               
192-508
               

               
Cow position:
               
chr1:20204814-20205134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 167
               

               
Conread position:
               
192-508
               

               
Cow position:
               
chr1:64678485-64678802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
192-508
               

               
Cow position:
               
chr1:81355916-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
192-509
               

               
Cow position:
               
chr1:11770506-11770196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
192-510
               

               
Cow position:
               
chr1:39427194-39426896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
261, 63
               

               
Conread position:
               
192-511
               

               
Cow position:
               
chr1:7350326-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
192-511
               

               
Cow position:
               
chr1:44506756-44507083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
192-511
               

               
Cow position:
               
chr1:74956236-74955911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
192-512
               

               
Cow position:
               
chr1:96964108-96964427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
192-512
               

               
Cow position:
               
chr1:100741080-100741389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
230, 10
               

               
Conread position:
               
192-513
               

               
Cow position:
               
chr1:99614235-99614553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
80, 150
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr1:19482285-19481969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
259, 74
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr1:19516617-19516285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr1:42874159-42873837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
236, 69
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr1:68845698-68845376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr1:80899895-80900232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 202
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr1:97954661-97954355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
53, 34
               

               
Conread position:
               
192-515
               

               
Cow position:
               
chr1:41056472-41056792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
192-516
               

               
Cow position:
               
chr1:37309723-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
192-516
               

               
Cow position:
               
chr1:95215398-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 188
               

               
Conread position:
               
192-517
               

               
Cow position:
               
chr1:68827118-68826796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
192-517
               

               
Cow position:
               
chr1:72286262-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
163, 56
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr1:36613487-36613142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr1:49317725-49317378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 191
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr1:53374223-53374546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr1:53458494-53458813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 63
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr1:72035141-72034806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr1:76470447-76470761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
110, 42
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:6305081-6304754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
87, 188
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:18937046-18936719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:40531321-40530984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
104, 8
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:44125852-44125519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
181, 56
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:53308605-53308275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
75, 55
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:56225263-56225588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 63
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:62964067-62964385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:68854962-68855283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:70380358-70380024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr1:75744648-75744981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr1:7971218-7971532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
236, 42
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr1:33719901-33720221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 163
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr1:35162191-35162530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 204
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr1:51445667-51446005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 73
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr1:78809671-78809996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
257, 61
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr1:98030702-98031042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:13637883-13637541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 75
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:42360054-42360411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 327
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:53369854-53370206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 157
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:54199595-54199272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
81, 5
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:54258355-54258689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
104, 58
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:55229772-55230099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:55705466-55705120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:71253767-71253433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 187
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:72069039-72068711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
204, 36
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:81913364-81913032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 115
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:84255542-84255890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:86113625-86113276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr1:100705920-100706250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:48105646-48105312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:65103424-65103739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
246, 46
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:67821422-67821097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
83, 48
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:69678538-69678201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:93810229-93810553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
156, 68
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:98594358-98594689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
103, 45
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr1:102349970-102349628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 325
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:1956540-1956210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:4290946-4291289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 73
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:10632841-10633173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 69
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:10778361-10778688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 54
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:25383450-25383795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:61005778-61005438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 176
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:61564580-61564903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 187
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:61742179-61741843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:72012016-72011688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:84239319-84238998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 72
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:89342205-89341855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 75
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:93528478-93528826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
83, 197
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:95017728-95017422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:100551758-100552100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:101713905-101714242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 109
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr1:101822710-101822390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:6941253-6941594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
238, 69
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:6958666-6959007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
238, 69
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:24534455-24534131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
261, 43
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:42887475-42887151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 79
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:77462152-77462476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:79844256-79844591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:94226760-94226429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
257, 62
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr1:100761879-100762203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
262, 24
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:1165389-1165713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
73, 131
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:1877815-1878147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 140
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:1991637-1991312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:3137721-3138040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:3924006-3923673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
260, 29
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:4027649-4027990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 153
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:4032422-4032759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:6077682-6078020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 181
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:10942304-10941968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
179, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:10964082-10964418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
179, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:16767297-16766958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:19885172-19885508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
77, 109
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:22728835-22729183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:24133268-24132936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 51
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:25281888-25281530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:26930187-26929870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 170
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:27145866-27145526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 178
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:28176787-28177131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 198
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:36874803-36875153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:37322217-37321875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:38278258-38277902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 191
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:39418331-39417988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:40599836-40600164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 50
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:43389260-43388925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:43505311-43505656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:47233687-47233351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 59
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:48731040-48730706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:49433477-49433137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 182
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:49795792-49796118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:49839295-49839611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:52039424-52039765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:52956047-52956378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
175, 72
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:52994811-52995153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:53622752-53623079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
103, 5
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:54732670-54732363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
207, 45
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:56229042-56229366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
230, 61
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:57575980-57575636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:57900953-57900597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:61884703-61885040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 137
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:64302446-64302117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
261, 51
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:68619148-68618806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:68818010-68817672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 10
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:69539486-69539819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
260, 22
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:69695221-69694867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 207
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:70434781-70435124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:71079169-71078834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:73960489-73960827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 180
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:74822239-74822578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:78857535-78857202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:79165303-79164967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 189
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:81569247-81568901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 175
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:82337996-82337653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:82936794-82936470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
260, 65
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:83583150-83582806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:84812149-84811811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 115
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:87072492-87072822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
240, 69
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:89381066-89381402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:89510145-89509794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:93043813-93044144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:95176723-95177064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:95499708-95499368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:98461078-98461411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:98551501-98551846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr1:99609153-99609495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
64, 196
               

               
Conread position:
               
193-342
               

               
Cow position:
               
chr1:33717010-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
193-354
               

               
Cow position:
               
chr1:94212022-94212183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
193-382
               

               
Cow position:
               
chr1:42968529-42968338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
193-413
               

               
Cow position:
               
chr1:96713025-96712803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 72
               

               
Conread position:
               
193-434
               

               
Cow position:
               
chr1:79663877-79663648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
193-438
               

               
Cow position:
               
chr1:99095152-99095393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
193-447
               

               
Cow position:
               
chr1:634980-635232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
193-447
               

               
Cow position:
               
chr1:11226457-11226208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
193-447
               

               
Cow position:
               
chr1:73561861-73561609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
193-510
               

               
Cow position:
               
chr1:101634490-101634821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
193-520
               

               
Cow position:
               
chr1:1981321-1980994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
200, 64
               

               
Conread position:
               
193-520
               

               
Cow position:
               
chr1:3167284-3166956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 154
               

               
Conread position:
               
193-524
               

               
Cow position:
               
chr1:100800144-100800474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 171
               

               
Conread position:
               
193-526
               

               
Cow position:
               
chr1:85028748-85029078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr1:41696843-41697185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 194
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr1:53671961-53671623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr1:80988135-80988473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr1:85162759-85162418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 142
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr1:97611864-97611530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
194-330
               

               
Cow position:
               
chr1:99792601-99792740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
194-349
               

               
Cow position:
               
chr1:7186577-7186739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
194-357
               

               
Cow position:
               
chr1:22628848-22628686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
194-373
               

               
Cow position:
               
chr1:57305622-57305798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 71
               

               
Conread position:
               
194-374
               

               
Cow position:
               
chr1:37646210-37646034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 48
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr1:87888192-87888384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 79
               

               
Conread position:
               
194-443
               

               
Cow position:
               
chr1:43358225-43357976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 76
               

               
Conread position:
               
194-445
               

               
Cow position:
               
chr1:4374549-4374301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
194-445
               

               
Cow position:
               
chr1:44155052-44155286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr1:26179025-26178773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr1:42256720-42256464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 197
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr1:57635256-57635500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr1:57639731-57639477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
194-456
               

               
Cow position:
               
chr1:99136641-99136384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
194-462
               

               
Cow position:
               
chr1:43380239-43379971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 72
               

               
Conread position:
               
194-490
               

               
Cow position:
               
chr1:94404006-94404294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
194-513
               

               
Cow position:
               
chr1:82884600-82884283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
194-515
               

               
Cow position:
               
chr1:85774249-85774571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
218, 143
               

               
Conread position:
               
194-519
               

               
Cow position:
               
chr1:97755311-97755621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
174, 59
               

               
Conread position:
               
194-520
               

               
Cow position:
               
chr1:68253381-68253714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
194-520
               

               
Cow position:
               
chr1:84240689-84240999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
261, 57
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr1:13413816-13414144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 93
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr1:52435060-52435392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr1:70828702-70829022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
201, 26
               

               
Conread position:
               
194-521
               

               
Cow position:
               
chr1:74084402-74084071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
194-524
               

               
Cow position:
               
chr1:29935592-29935265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 106
               

               
Conread position:
               
194-524
               

               
Cow position:
               
chr1:70538393-70538734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
194-524
               

               
Cow position:
               
chr1:93499412-93499743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 139
               

               
Conread position:
               
194-525
               

               
Cow position:
               
chr1:95056845-95057169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
194-526
               

               
Cow position:
               
chr1:41252613-41252285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
194-526
               

               
Cow position:
               
chr1:102784750-102785078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 136
               

               
Conread position:
               
194-527
               

               
Cow position:
               
chr1:81613175-81613515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr1:11914088-11913750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 71
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr1:21835738-21836056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
173, 43
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr1:22826959-22827284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 69
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr1:53397777-53398103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
81, 131
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr1:54207029-54206691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
195-363
               

               
Cow position:
               
chr1:2169729-2169561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 144
               

               
Conread position:
               
195-374
               

               
Cow position:
               
chr1:342354-342172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
195-412
               

               
Cow position:
               
chr1:80363406-80363188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 178
               

               
Conread position:
               
195-414
               

               
Cow position:
               
chr1:78154934-78154718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
195-429
               

               
Cow position:
               
chr1:57946096-57945854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
195-429
               

               
Cow position:
               
chr1:71257692-71257452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 48
               

               
Conread position:
               
195-431
               

               
Cow position:
               
chr1:51818732-51818964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
195-438
               

               
Cow position:
               
chr1:22745417-22745654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
195-438
               

               
Cow position:
               
chr1:77502989-77502757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
195-438
               

               
Cow position:
               
chr1:84282855-84283102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 189
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr1:15050149-15050386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr1:31348650-31348399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr1:71643873-71643625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 169
               

               
Conread position:
               
195-447
               

               
Cow position:
               
chr1:83082792-83083046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
195-506
               

               
Cow position:
               
chr1:62291895-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
195-512
               

               
Cow position:
               
chr1:53424978-53425288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
106, 42
               

               
Conread position:
               
195-520
               

               
Cow position:
               
chr1:89349768-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 53
               

               
Conread position:
               
195-521
               

               
Cow position:
               
chr1:8413-8735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
106, 76
               

               
Conread position:
               
195-527
               

               
Cow position:
               
chr1:54478115-54478455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 45
               

               
Conread position:
               
195-527
               

               
Cow position:
               
chr1:68862826-68863158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
195-527
               

               
Cow position:
               
chr1:76019891-76019570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
195-528
               

               
Cow position:
               
chr1:75382782-75383097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
77, 113
               

               
Conread position:
               
196-421
               

               
Cow position:
               
chr1:44164870-44165098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
70, 192
               

               
Conread position:
               
196-447
               

               
Cow position:
               
chr1:16855899-16855661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
196-447
               

               
Cow position:
               
chr1:42555061-42555304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
105, 41
               

               
Conread position:
               
196-447
               

               
Cow position:
               
chr1:60707195-60707441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 58
               

               
Conread position:
               
196-455
               

               
Cow position:
               
chr1:4573312-4573567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
253, 171
               

               
Conread position:
               
196-515
               

               
Cow position:
               
chr1:37707177-37706863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 127
               

               
Conread position:
               
196-521
               

               
Cow position:
               
chr1:100393373-100393043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
196-524
               

               
Cow position:
               
chr1:5135900-5135587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
196-526
               

               
Cow position:
               
chr1:197216-196882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 139
               

               
Conread position:
               
196-526
               

               
Cow position:
               
chr1:78810827-78811164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
196-528
               

               
Cow position:
               
chr1:15547260-15547597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
99, 65
               

               
Conread position:
               
196-528
               

               
Cow position:
               
chr1:48580923-48581256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
196-528
               

               
Cow position:
               
chr1:50931177-50930852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 35
               

               
Conread position:
               
196-528
               

               
Cow position:
               
chr1:53520698-53521042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr1:52329736-52329480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
197-447
               

               
Cow position:
               
chr1:98310854-98311108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
78, 200
               

               
Conread position:
               
197-511
               

               
Cow position:
               
chr1:100450392-100450066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
197-519
               

               
Cow position:
               
chr1:64804315-64803984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
78, 162
               

               
Conread position:
               
197-523
               

               
Cow position:
               
chr1:12464871-12464542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 70
               

               
Conread position:
               
198-416
               

               
Cow position:
               
chr1:41004574-41004353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 182
               

               
Conread position:
               
198-446
               

               
Cow position:
               
chr1:98372422-98372669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 149
               

               
Conread position:
               
199-422
               

               
Cow position:
               
chr1:32013751-32013967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 73
               

               
Conread position:
               
199-430
               

               
Cow position:
               
chr1:84170282-84170497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
199-437
               

               
Cow position:
               
chr1:80869901-80870143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 185
               

               
Conread position:
               
199-447
               

               
Cow position:
               
chr1:6867686-6867427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 79
               

               
Conread position:
               
199-508
               

               
Cow position:
               
chr1:4414413-4414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
199-528
               

               
Cow position:
               
chr1:3790261-3789943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
256, 55
               

               
Conread position:
               
201-517
               

               
Cow position:
               
chr1:89497761-89498062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
202-485
               

               
Cow position:
               
chr1:68951429-68951709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
202-521
               

               
Cow position:
               
chr1:28563771-28563449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
202-523
               

               
Cow position:
               
chr1:63435012-63434685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
203-521
               

               
Cow position:
               
chr1:43872536-43872200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
205-443
               

               
Cow position:
               
chr1:24413240-24413485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
206-438
               

               
Cow position:
               
chr1:32244603-32244366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
206-446
               

               
Cow position:
               
chr1:72103648-72103887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
206-528
               

               
Cow position:
               
chr1:90976281-90975960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
207-357
               

               
Cow position:
               
chr1:7449935-7450082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
207-360
               

               
Cow position:
               
chr1:18697550-18697390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
207-414
               

               
Cow position:
               
chr1:8532413-8532208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 161
               

               
Conread position:
               
207-414
               

               
Cow position:
               
chr1:55686418-55686192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
207-441
               

               
Cow position:
               
chr1:64421133-64421363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
207-444
               

               
Cow position:
               
chr1:81470931-81471168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 172
               

               
Conread position:
               
207-447
               

               
Cow position:
               
chr1:84906265-84906025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
207-447
               

               
Cow position:
               
chr1:95654913-95654675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
207-514
               

               
Cow position:
               
chr1:71295512-71295179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
207-526
               

               
Cow position:
               
chr1:95100764-95101063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 113
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr1:5597396-5597084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr1:15333680-15334018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
65, 204
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr1:34771701-34771376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
246, 36
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr1:43340820-43340507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 181
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr1:62036603-62036928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr1:94261350-94261662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
88, 58
               

               
Conread position:
               
208-374
               

               
Cow position:
               
chr1:92370558-92370390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
208-418
               

               
Cow position:
               
chr1:89438132-89437929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
133, 47
               

               
Conread position:
               
208-447
               

               
Cow position:
               
chr1:63138642-63138879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 66
               

               
Conread position:
               
208-521
               

               
Cow position:
               
chr1:61391988-61391671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
208-524
               

               
Cow position:
               
chr1:66430100-66430414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
208-526
               

               
Cow position:
               
chr1:40192874-40192583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
239, 34
               

               
Conread position:
               
209-332
               

               
Cow position:
               
chr1:51044415-51044541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
209-363
               

               
Cow position:
               
chr1:92607115-92606957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
209-445
               

               
Cow position:
               
chr1:6788485-6788247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
64, 186
               

               
Conread position:
               
209-446
               

               
Cow position:
               
chr1:13404322-13404085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 179
               

               
Conread position:
               
209-447
               

               
Cow position:
               
chr1:21955569-21955335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
84, 162
               

               
Conread position:
               
209-447
               

               
Cow position:
               
chr1:51654215-51654462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 40
               

               
Conread position:
               
209-457
               

               
Cow position:
               
chr1:65025061-65025313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 183
               

               
Conread position:
               
209-528
               

               
Cow position:
               
chr1:24542777-24542442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
210-357
               

               
Cow position:
               
chr1:86325805-86325656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
210-447
               

               
Cow position:
               
chr1:82443651-82443416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 55
               

               
Conread position:
               
210-520
               

               
Cow position:
               
chr1:32001515-32001202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
210-524
               

               
Cow position:
               
chr1:96277249-96276928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
211-514
               

               
Cow position:
               
chr1:58754978-58754684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
240, 32
               

               
Conread position:
               
212-364
               

               
Cow position:
               
chr1:97806596-97806747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
212-381
               

               
Cow position:
               
chr1:53613385-53613219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
212-397
               

               
Cow position:
               
chr1:102113301-102113115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
62, 167
               

               
Conread position:
               
212-429
               

               
Cow position:
               
chr1:56674322-56674106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
212-432
               

               
Cow position:
               
chr1:83594000-83593785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
212-447
               

               
Cow position:
               
chr1:86279222-86279451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
212-512
               

               
Cow position:
               
chr1:83072251-83072552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
213-512
               

               
Cow position:
               
chr1:81868917-81868619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
34, 43
               

               
Conread position:
               
213-514
               

               
Cow position:
               
chr1:724543-724853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
213-528
               

               
Cow position:
               
chr1:31806682-31806988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 163
               

               
Conread position:
               
213-528
               

               
Cow position:
               
chr1:33331280-33330966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 93
               

               
Conread position:
               
214-514
               

               
Cow position:
               
chr1:91039367-91039061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
214-528
               

               
Cow position:
               
chr1:102291345-102291034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 238
               

               
Conread position:
               
215-521
               

               
Cow position:
               
chr1:39510240-39509938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 61
               

               
Conread position:
               
215-522
               

               
Cow position:
               
chr1:71227887-71228212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 320
               

               
Conread position:
               
215-528
               

               
Cow position:
               
chr1:92369539-92369861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 175
               

               
Conread position:
               
216-500
               

               
Cow position:
               
chr1:43703226-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
236, 18
               

               
Conread position:
               
216-528
               

               
Cow position:
               
chr1:33207063-33206752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
57, 139
               

               
Conread position:
               
216-528
               

               
Cow position:
               
chr1:54156929-54156606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
218-381
               

               
Cow position:
               
chr1:69378936-69378770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
218-414
               

               
Cow position:
               
chr1:89082921-89083110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
218-447
               

               
Cow position:
               
chr1:42398383-42398153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
83, 47
               

               
Conread position:
               
218-524
               

               
Cow position:
               
chr1:61012123-61012437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
57, 82
               

               
Conread position:
               
219-521
               

               
Cow position:
               
chr1:31608084-31607769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
220-438
               

               
Cow position:
               
chr1:3243754-3243965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
220-447
               

               
Cow position:
               
chr1:99039537-99039317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
220-520
               

               
Cow position:
               
chr1:75933088-75933385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
220-527
               

               
Cow position:
               
chr1:86578764-86579088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
220-528
               

               
Cow position:
               
chr1:68763866-68763560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
229, 45
               

               
Conread position:
               
221-447
               

               
Cow position:
               
chr1:74947310-74947079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
54, 190
               

               
Conread position:
               
221-528
               

               
Cow position:
               
chr1:43352840-43352529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
222-437
               

               
Cow position:
               
chr1:24445811-24445599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
222-521
               

               
Cow position:
               
chr1:65318399-65318694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
222-528
               

               
Cow position:
               
chr1:24778161-24777866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
225, 33
               

               
Conread position:
               
224-444
               

               
Cow position:
               
chr1:99062102-99061887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
224-528
               

               
Cow position:
               
chr1:89388151-89388471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
225-528
               

               
Cow position:
               
chr1:20667921-20667616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
228, 40
               

               
Conread position:
               
229-447
               

               
Cow position:
               
chr1:57297298-57297520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
230-528
               

               
Cow position:
               
chr1:90621689-90621378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 135
               

               
Conread position:
               
230-528
               

               
Cow position:
               
chr1:91875085-91874790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 147
               

               
Conread position:
               
232-528
               

               
Cow position:
               
chr1:51417599-51417898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
234-512
               

               
Cow position:
               
chr1:12978506-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 161
               

               
Conread position:
               
236-447
               

               
Cow position:
               
chr1:75347448-75347663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 174
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr1:27380303-27380564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
239-528
               

               
Cow position:
               
chr1:81290345-81290632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chr1:20544127-20544316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr1:69127331-69127128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
155, 66
               

               
Conread position:
               
240-524
               

               
Cow position:
               
chr1:55429124-55428833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
240-527
               

               
Cow position:
               
chr1:88913149-88913445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
240-528
               

               
Cow position:
               
chr1:22525716-22526004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
240-528
               

               
Cow position:
               
chr1:59518751-59519041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
240-528
               

               
Cow position:
               
chr1:97696572-97696871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
240-528
               

               
Cow position:
               
chr1:101632503-101632209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
211, 21
               

               
Conread position:
               
241-527
               

               
Cow position:
               
chr1:24581416-24581702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
242-441
               

               
Cow position:
               
chr1:60281208-60281405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
242-527
               

               
Cow position:
               
chr1:86110898-86110617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
243-394
               

               
Cow position:
               
chr1:31960059-31960214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 137
               

               
Conread position:
               
243-526
               

               
Cow position:
               
chr1:63530410-63530685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
244-447
               

               
Cow position:
               
chr1:38753753-38753961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
244-452
               

               
Cow position:
               
chr1:89508392-89508592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
244-500
               

               
Cow position:
               
chr1:87211781-87212032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
244-521
               

               
Cow position:
               
chr1:484630-484347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
63, 136
               

               
Conread position:
               
244-528
               

               
Cow position:
               
chr1:77880895-77880606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
245-527
               

               
Cow position:
               
chr1:77683194-77683475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
245-528
               

               
Cow position:
               
chr1:93554680-93554963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
246-528
               

               
Cow position:
               
chr1:3882627-3882332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
246-528
               

               
Cow position:
               
chr1:45553393-45553116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
207, 26
               

               
Conread position:
               
246-528
               

               
Cow position:
               
chr1:85647944-85647653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
247-514
               

               
Cow position:
               
chr1:38401631-38401912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
248-438
               

               
Cow position:
               
chr1:51684643-51684836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
248-528
               

               
Cow position:
               
chr1:14206316-14206027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
249-447
               

               
Cow position:
               
chr1:7609461-7609658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
249-447
               

               
Cow position:
               
chr1:101946866-101946676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
249-528
               

               
Cow position:
               
chr1:42175565-42175854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 131
               

               
Conread position:
               
252-431
               

               
Cow position:
               
chr1:85826190-85826369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-528
               

               
Cow position:
               
chr1:31272591-31272316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
201, 15
               

               
Conread position:
               
253-520
               

               
Cow position:
               
chr1:22192608-22192888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
253-524
               

               
Cow position:
               
chr1:91811631-91811902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 73
               

               
Conread position:
               
253-526
               

               
Cow position:
               
chr1:42545939-42545654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
255-525
               

               
Cow position:
               
chr1:41115868-41115595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 122
               

               
Conread position:
               
255-528
               

               
Cow position:
               
chr1:86682716-86682435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 140
               

               
Conread position:
               
256-521
               

               
Cow position:
               
chr1:68245460-68245200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
258-524
               

               
Cow position:
               
chr1:89448750-89449023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 128
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chr1:30047740-30047486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
194, 100
               

               
Conread position:
               
272-528
               

               
Cow position:
               
chr1:17196762-17196501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
173, 12
               

               
Conread position:
               
273-447
               

               
Cow position:
               
chr1:85301286-85301455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
273-447
               

               
Cow position:
               
chr1:87440336-87440506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
273-453
               

               
Cow position:
               
chr1:40069110-40069280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
31, 6
               

               
Conread position:
               
273-455
               

               
Cow position:
               
chr1:70312937-70312759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
163, 89
               

               
Conread position:
               
273-514
               

               
Cow position:
               
chr1:64572381-64572628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
178, 110
               

               
Conread position:
               
273-525
               

               
Cow position:
               
chr1:24407019-24406773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
180, 21
               

               
Conread position:
               
273-525
               

               
Cow position:
               
chr1:97090195-97090450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
181, 56
               

               
Conread position:
               
273-527
               

               
Cow position:
               
chr1:39225057-39224800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
171, 32
               

               
Conread position:
               
273-528
               

               
Cow position:
               
chr1:8129099-8128842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
273-528
               

               
Cow position:
               
chr1:18780466-18780202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
273-528
               

               
Cow position:
               
chr1:41047432-41047175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
182, 31
               

               
Conread position:
               
273-528
               

               
Cow position:
               
chr1:78838666-78838922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
180, 67
               

               
Conread position:
               
273-528
               

               
Cow position:
               
chr1:85550210-85549950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
176, 102
               

               
Conread position:
               
274-524
               

               
Cow position:
               
chr1:79640421-79640165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
179, 24
               

               
Conread position:
               
274-528
               

               
Cow position:
               
chr1:91023599-91023340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 102
               

               
Conread position:
               
275-511
               

               
Cow position:
               
chr1:89230358-89230121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
179, 42
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr1:87197697-87197947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
278-519
               

               
Cow position:
               
chr1:72105286-72105524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
149, 8
               

               
Conread position:
               
278-527
               

               
Cow position:
               
chr1:101834697-101834942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
169, 48
               

               
Conread position:
               
280-445
               

               
Cow position:
               
chr1:8984810-8984646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
281-454
               

               
Cow position:
               
chr1:3061711-3061537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
146, 95
               

               
Conread position:
               
283-528
               

               
Cow position:
               
chr1:20104146-20104394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
113, 83
               

               
Conread position:
               
283-528
               

               
Cow position:
               
chr1:43311898-43311644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
284-528
               

               
Cow position:
               
chr1:78697893-78697645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
285-455
               

               
Cow position:
               
chr1:22394674-22394849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
286-464
               

               
Cow position:
               
chr1:9437428-9437251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 90
               

               
Conread position:
               
286-521
               

               
Cow position:
               
chr1:261598-261352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
289-520
               

               
Cow position:
               
chr1:6826405-6826180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
159, 55
               

               
Conread position:
               
293-436
               

               
Cow position:
               
chr1:22466623-22466481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
293-527
               

               
Cow position:
               
chr1:56618763-56618529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 83
               

               
Conread position:
               
293-528
               

               
Cow position:
               
chr1:7023008-7023248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
164, 59
               

               
Conread position:
               
293-528
               

               
Cow position:
               
chr1:10716390-10716623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
161, 48
               

               
Conread position:
               
294-515
               

               
Cow position:
               
chr1:61543029-61542805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
155, 78
               

               
Conread position:
               
294-526
               

               
Cow position:
               
chr1:65028418-65028656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
300-524
               

               
Cow position:
               
chr1:37886915-37886689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
300-526
               

               
Cow position:
               
chr1:82880539-82880769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
155, 91
               

               
Conread position:
               
300-528
               

               
Cow position:
               
chr1:43855196-43855421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
167, 92
               

               
Conread position:
               
302-525
               

               
Cow position:
               
chr1:43822297-43822523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
303-521
               

               
Cow position:
               
chr1:51044408-51044189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
303-521
               

               
Cow position:
               
chr1:102306247-102306026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
304-520
               

               
Cow position:
               
chr1:77232669-77232459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
147, 24
               

               
Conread position:
               
305-446
               

               
Cow position:
               
chr1:91370109-91369972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
305-455
               

               
Cow position:
               
chr1:85866048-85866188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
305-508
               

               
Cow position:
               
chr1:19227155-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
146, 52
               

               
Conread position:
               
305-519
               

               
Cow position:
               
chr1:78066642-78066419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
306-447
               

               
Cow position:
               
chr1:58439101-58438961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
308-515
               

               
Cow position:
               
chr1:30189049-30189266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
308-523
               

               
Cow position:
               
chr1:48769705-48769924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
308-528
               

               
Cow position:
               
chr1:98511831-98512053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 82
               

               
Conread position:
               
310-527
               

               
Cow position:
               
chr1:30418133-30417922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 50
               

               
Conread position:
               
314-527
               

               
Cow position:
               
chr1:100474140-100474360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
314-528
               

               
Cow position:
               
chr1:50991843-50992061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
143, 45
               

               
Conread position:
               
315-511
               

               
Cow position:
               
chr1:4581417-4581220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 30
               

               
Conread position:
               
315-527
               

               
Cow position:
               
chr1:89158218-89157999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
316-528
               

               
Cow position:
               
chr1:67688669-67688456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
316-528
               

               
Cow position:
               
chr1:79135190-79135405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
317-528
               

               
Cow position:
               
chr1:90904842-90904629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
321-528
               

               
Cow position:
               
chr1:45223495-45223708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
322-519
               

               
Cow position:
               
chr1:99793460-99793667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
322-520
               

               
Cow position:
               
chr1:5155297-5155100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
116, 7
               

               
Conread position:
               
323-519
               

               
Cow position:
               
chr1:49825152-49824946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
323-526
               

               
Cow position:
               
chr1:80841570-80841771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
324-447
               

               
Cow position:
               
chr1:41695518-41695640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
325-447
               

               
Cow position:
               
chr1:61560807-61560685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
325-528
               

               
Cow position:
               
chr1:52912978-52912771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
128, 13
               

               
Conread position:
               
326-520
               

               
Cow position:
               
chr1:48214241-48214039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
327-514
               

               
Cow position:
               
chr1:52467223-52467416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
329-526
               

               
Cow position:
               
chr1:81580093-81580302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
330-520
               

               
Cow position:
               
chr1:79003898-79004090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
330-524
               

               
Cow position:
               
chr1:35671466-35671662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
334-528
               

               
Cow position:
               
chr1:186348-186154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
341-519
               

               
Cow position:
               
chr1:54267998-54267821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr1:3965775-3965960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr1:95072265-95072459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 42
               

               
Conread position:
               
342-520
               

               
Cow position:
               
chr1:46143526-46143343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
345-521
               

               
Cow position:
               
chr1:48206596-48206416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 95
               

               
Conread position:
               
345-528
               

               
Cow position:
               
chr1:48618300-48618117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
345-528
               

               
Cow position:
               
chr1:62235508-62235321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 38
               

               
Conread position:
               
346-528
               

               
Cow position:
               
chr1:60901014-60901200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
349-528
               

               
Cow position:
               
chr1:79630971-79630788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
350-528
               

               
Cow position:
               
chr1:81481440-81481255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
351-524
               

               
Cow position:
               
chr1:70175596-70175416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
351-528
               

               
Cow position:
               
chr1:52662229-52662045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
353-528
               

               
Cow position:
               
chr1:49153263-49153443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 140
               

               
Conread position:
               
359-514
               

               
Cow position:
               
chr1:97833663-97833820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
365-521
               

               
Cow position:
               
chr1:62997756-62997916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
375-520
               

               
Cow position:
               
chr1:41027041-41027193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
384-514
               

               
Cow position:
               
chr1:27959575-27959438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
386-528
               

               
Cow position:
               
chr1:98911985-98912130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
392-527
               

               
Cow position:
               
chr1:83092858-83092990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
393-528
               

               
Cow position:
               
chr1:45315652-45315509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
394-528
               

               
Cow position:
               
chr1:19962038-19962177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
395-528
               

               
Cow position:
               
chr1:759432-759291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr1:68688573-68688710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
404-528
               

               
Cow position:
               
chr1:40212337-40212217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               
Show alignments to all cow chromosomes.