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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_010910.5
        

               
Conread position:
               
181-506
               

               
Cow position:
               
chr21:20260487-20260157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
187-387
               

               
Cow position:
               
chr21:34141346-34141147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
188-414
               

               
Cow position:
               
chr21:24796197-24795971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
188-526
               

               
Cow position:
               
chr21:1591389-1591729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
189-366
               

               
Cow position:
               
chr21:24714494-24714675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
189-397
               

               
Cow position:
               
chr21:36819371-36819162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
189-421
               

               
Cow position:
               
chr21:23984442-23984212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
189-431
               

               
Cow position:
               
chr21:19615015-19615254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
189-433
               

               
Cow position:
               
chr21:49662275-49662039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
189-436
               

               
Cow position:
               
chr21:8549519-8549767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 197
               

               
Conread position:
               
189-438
               

               
Cow position:
               
chr21:12087433-12087675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr21:17674394-17674137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr21:25536838-25537094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr21:25800249-25800496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
134, 44
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr21:30150424-30150167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
189-461
               

               
Cow position:
               
chr21:5238237-5238497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
189-484
               

               
Cow position:
               
chr21:23499981-23499688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
189-494
               

               
Cow position:
               
chr21:35061930-35062233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
189-502
               

               
Cow position:
               
chr21:28998064-28997746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
189-515
               

               
Cow position:
               
chr21:37845906-37845592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 111
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr21:4098717-4099046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 61
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr21:23801280-23800951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr21:35997015-35997348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 84
               

               
Conread position:
               
189-520
               

               
Cow position:
               
chr21:44754935-44754613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
189-523
               

               
Cow position:
               
chr21:46242398-46242061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
189-524
               

               
Cow position:
               
chr21:31662302-31662648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 199
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr21:34565371-34565029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 132
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr21:34653924-34654258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 13
               

               
Conread position:
               
189-528
               

               
Cow position:
               
chr21:42348836-42348511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 184
               

               
Conread position:
               
190-428
               

               
Cow position:
               
chr21:5596989-5597229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 110
               

               
Conread position:
               
190-447
               

               
Cow position:
               
chr21:25286352-25286613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
190-456
               

               
Cow position:
               
chr21:23785871-23786136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 66
               

               
Conread position:
               
191-354
               

               
Cow position:
               
chr21:24887852-24888015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
81, 110
               

               
Conread position:
               
191-359
               

               
Cow position:
               
chr21:46829424-46829259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
191-424
               

               
Cow position:
               
chr21:42145761-42145992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
191-428
               

               
Cow position:
               
chr21:27743586-27743826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
191-428
               

               
Cow position:
               
chr21:36793736-36793972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
191-438
               

               
Cow position:
               
chr21:33727617-33727376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
191-445
               

               
Cow position:
               
chr21:28993782-28993522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
191-447
               

               
Cow position:
               
chr21:33997378-33997131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
191-520
               

               
Cow position:
               
chr21:10633797-10633464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
104, 74
               

               
Conread position:
               
191-525
               

               
Cow position:
               
chr21:3236374-3236690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
199, 42
               

               
Conread position:
               
191-525
               

               
Cow position:
               
chr21:42053421-42053096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
191-526
               

               
Cow position:
               
chr21:45330097-45329768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr21:5898554-5898218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
202, 81
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr21:14760424-14760750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr21:46849279-46848943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
104, 46
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr21:47764269-47763933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
192-296
               

               
Cow position:
               
chr21:31278624-31278726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-326
               

               
Cow position:
               
chr21:28029242-28029379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-328
               

               
Cow position:
               
chr21:43631358-43631219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-330
               

               
Cow position:
               
chr21:14125890-14126030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
192-335
               

               
Cow position:
               
chr21:31159101-31159250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
192-335
               

               
Cow position:
               
chr21:42465674-42465820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
192-343
               

               
Cow position:
               
chr21:4268718-4268871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
108, 81
               

               
Conread position:
               
192-343
               

               
Cow position:
               
chr21:13163735-13163886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 81
               

               
Conread position:
               
192-346
               

               
Cow position:
               
chr21:5566834-5566998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
192-350
               

               
Cow position:
               
chr21:4276747-4276588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
192-353
               

               
Cow position:
               
chr21:18935602-18935764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 151
               

               
Conread position:
               
192-360
               

               
Cow position:
               
chr21:23683395-23683560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
192-363
               

               
Cow position:
               
chr21:42463996-42463819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 151
               

               
Conread position:
               
192-365
               

               
Cow position:
               
chr21:28512377-28512546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
192-373
               

               
Cow position:
               
chr21:9998876-9998692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr21:393866-394045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr21:4998642-4998460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
90, 68
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr21:18494810-18494995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr21:48484599-48484421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
192-380
               

               
Cow position:
               
chr21:45375460-45375655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
54, 113
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr21:9028465-9028660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
80, 181
               

               
Conread position:
               
192-383
               

               
Cow position:
               
chr21:11706907-11706711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 183
               

               
Conread position:
               
192-385
               

               
Cow position:
               
chr21:34658879-34659072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 61
               

               
Conread position:
               
192-387
               

               
Cow position:
               
chr21:6765725-6765917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
192-389
               

               
Cow position:
               
chr21:47861039-47861238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 60
               

               
Conread position:
               
192-396
               

               
Cow position:
               
chr21:8618119-8618327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
192-396
               

               
Cow position:
               
chr21:41957329-41957126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
192-406
               

               
Cow position:
               
chr21:12616984-12617195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
208, 75
               

               
Conread position:
               
192-412
               

               
Cow position:
               
chr21:13035203-13034977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
192-413
               

               
Cow position:
               
chr21:40786515-40786740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
83, 185
               

               
Conread position:
               
192-414
               

               
Cow position:
               
chr21:31676343-31676562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 37
               

               
Conread position:
               
192-414
               

               
Cow position:
               
chr21:42190324-42190108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 42
               

               
Conread position:
               
192-418
               

               
Cow position:
               
chr21:42913901-42913676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 58
               

               
Conread position:
               
192-425
               

               
Cow position:
               
chr21:42905533-42905297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
192-428
               

               
Cow position:
               
chr21:2785935-2785699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 165
               

               
Conread position:
               
192-434
               

               
Cow position:
               
chr21:47802415-47802176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr21:1464073-1464314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
192-435
               

               
Cow position:
               
chr21:8985394-8985636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chr21:37361623-37361379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 59
               

               
Conread position:
               
192-437
               

               
Cow position:
               
chr21:34391126-34390889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:7132618-7132391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 153
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:16612474-16612712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:17174989-17175234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:20925662-20925418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:28443533-28443285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 160
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:28881987-28882225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
234, 56
               

               
Conread position:
               
192-438
               

               
Cow position:
               
chr21:41155705-41155952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
192-439
               

               
Cow position:
               
chr21:2367185-2367420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
192-439
               

               
Cow position:
               
chr21:5455143-5454903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
192-439
               

               
Cow position:
               
chr21:18783839-18783600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 66
               

               
Conread position:
               
192-442
               

               
Cow position:
               
chr21:24130925-24131160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
192-445
               

               
Cow position:
               
chr21:3381237-3380984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
192-445
               

               
Cow position:
               
chr21:41455106-41454854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 117
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:4905128-4904871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 185
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:5344500-5344762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:7564477-7564211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:13409978-13409735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:13488364-13488623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:13489487-13489742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 184
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:13840167-13840423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:15584565-15584323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:17511621-17511872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:18289507-18289759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:19363619-19363363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:19937088-19936824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:22856059-22856314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:24607230-24607482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
80, 158
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:29214304-29214064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:30231857-30231598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 174
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:32535821-32536073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:33729279-33729526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 75
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:36163118-36162863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:40899181-40899435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
80, 171
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:41198566-41198303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:41620964-41621221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 195
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:44515119-44515360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:46143788-46144055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
85, 213
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:46912386-46912641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
109, 62
               

               
Conread position:
               
192-447
               

               
Cow position:
               
chr21:47760620-47760864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
192-448
               

               
Cow position:
               
chr21:49700191-49699943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
108, 69
               

               
Conread position:
               
192-452
               

               
Cow position:
               
chr21:3047529-3047780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
148, 81
               

               
Conread position:
               
192-453
               

               
Cow position:
               
chr21:12961058-12960798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 166
               

               
Conread position:
               
192-460
               

               
Cow position:
               
chr21:14464421-14464688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
82, 145
               

               
Conread position:
               
192-460
               

               
Cow position:
               
chr21:21769969-21770236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 186
               

               
Conread position:
               
192-462
               

               
Cow position:
               
chr21:35897781-35897529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
192-462
               

               
Cow position:
               
chr21:39888899-39888639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
192-486
               

               
Cow position:
               
chr21:4795070-4795363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
192-490
               

               
Cow position:
               
chr21:10727125-10727417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
261, 77
               

               
Conread position:
               
192-493
               

               
Cow position:
               
chr21:13738413-13738702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
192-494
               

               
Cow position:
               
chr21:39401439-39401741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
210, 73
               

               
Conread position:
               
192-494
               

               
Cow position:
               
chr21:41878321-41878620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
259, 25
               

               
Conread position:
               
192-503
               

               
Cow position:
               
chr21:18842393-18842077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
192-505
               

               
Cow position:
               
chr21:42540375-42540059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
192-507
               

               
Cow position:
               
chr21:18850374-18850059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
232, 42
               

               
Conread position:
               
192-510
               

               
Cow position:
               
chr21:28955367-28955668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
265, 46
               

               
Conread position:
               
192-511
               

               
Cow position:
               
chr21:2679397-2679716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 168
               

               
Conread position:
               
192-511
               

               
Cow position:
               
chr21:8125955-8125637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
192-511
               

               
Cow position:
               
chr21:12801902-12801579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 82
               

               
Conread position:
               
192-512
               

               
Cow position:
               
chr21:9710858-9710563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
72, 57
               

               
Conread position:
               
192-512
               

               
Cow position:
               
chr21:31253381-31253702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 187
               

               
Conread position:
               
192-512
               

               
Cow position:
               
chr21:40244279-40244607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr21:15911245-15911571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr21:33791523-33791211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 57
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr21:38120952-38121272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 67
               

               
Conread position:
               
192-518
               

               
Cow position:
               
chr21:42414258-42413922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr21:7672977-7673296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
181, 68
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr21:10118398-10118742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 189
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr21:18568805-18568463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 189
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr21:33263695-33264021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr21:33982964-33982634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 106
               

               
Conread position:
               
192-519
               

               
Cow position:
               
chr21:37706562-37706239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:3585514-3585191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
262, 45
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:15610996-15611317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
84, 56
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:18828465-18828126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 118
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:21223134-21223458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
81, 145
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:28989457-28989790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:32297666-32297342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:33210043-33210365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 189
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:44671598-44671921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 133
               

               
Conread position:
               
192-520
               

               
Cow position:
               
chr21:45355681-45356010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
255, 82
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr21:22718936-22718606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 146
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr21:25764479-25764813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 142
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr21:36795448-36795781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
103, 73
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr21:40134001-40134335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
81, 185
               

               
Conread position:
               
192-521
               

               
Cow position:
               
chr21:47465276-47464941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 40
               

               
Conread position:
               
192-522
               

               
Cow position:
               
chr21:725047-724700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 189
               

               
Conread position:
               
192-522
               

               
Cow position:
               
chr21:28442589-28442911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
84, 66
               

               
Conread position:
               
192-523
               

               
Cow position:
               
chr21:34739691-34740024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:33566-33900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:712779-713124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
175, 58
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:4282023-4281699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:7582065-7581724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 191
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:15445234-15444904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 189
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:27569316-27568992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 59
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:27863675-27863333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
80, 155
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:28190873-28191213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:28244320-28244651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
234, 59
               

               
Conread position:
               
192-524
               

               
Cow position:
               
chr21:36297323-36297675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr21:395720-396049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
240, 55
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr21:13365189-13365524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 61
               

               
Conread position:
               
192-525
               

               
Cow position:
               
chr21:28211041-28211373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 131
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr21:641429-641770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr21:2927362-2927022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 229
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr21:29069484-29069143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr21:32559509-32559182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
192-526
               

               
Cow position:
               
chr21:37345257-37344918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
103, 186
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:802449-802133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:6051351-6051687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 164
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:10000925-10001259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
105, 30
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:22860846-22861183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 73
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:25382854-25383210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:27229950-27229611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 81
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:28810418-28810078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:30990424-30990105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:38692034-38692380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr21:40589638-40589298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:81915-82252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:643178-643509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 61
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:1058921-1059261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
105, 185
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:3361170-3360830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:9990359-9990695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:10114484-10114150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:10263885-10264217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
256, 59
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:10514652-10514987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
243, 16
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:11645124-11644780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:13128249-13127914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
251, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:13585215-13584876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
156, 45
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:15976486-15976817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:17643128-17642801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:18065079-18064733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:18790711-18790381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 56
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:18800684-18800349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:19258671-19259002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:20262489-20262166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:21169650-21169311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 80
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:23322239-23321893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:23586721-23587066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 187
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:23672588-23672930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:24598506-24598842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
83, 48
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:24858156-24858500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:27521483-27521155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:28734067-28733726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:29002317-29001972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 187
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:29484828-29485163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 70
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:30250364-30250019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
70, 148
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:30592459-30592124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:30607243-30606911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
265, 73
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:30849094-30848756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
175, 15
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:31691323-31691667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:33350587-33350926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 143
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:33562860-33563188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:37479801-37480150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
82, 155
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:38900619-38900959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 171
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:41590712-41590380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 80
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:41597660-41597996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 185
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:41974534-41974193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 196
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:42500877-42501236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:42841748-42841412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
105, 61
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:44826039-44825701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
192-528
               

               
Cow position:
               
chr21:45473912-45473572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 82
               

               
Conread position:
               
193-373
               

               
Cow position:
               
chr21:28027649-28027833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
193-380
               

               
Cow position:
               
chr21:5636875-5636685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
193-399
               

               
Cow position:
               
chr21:48251184-48250977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
193-432
               

               
Cow position:
               
chr21:28477467-28477704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
83, 192
               

               
Conread position:
               
193-438
               

               
Cow position:
               
chr21:6910038-6909793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
193-446
               

               
Cow position:
               
chr21:27124281-27124026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
193-447
               

               
Cow position:
               
chr21:10601523-10601279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
179, 49
               

               
Conread position:
               
193-447
               

               
Cow position:
               
chr21:13048351-13048097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
193-520
               

               
Cow position:
               
chr21:9477004-9477339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 161
               

               
Conread position:
               
193-526
               

               
Cow position:
               
chr21:11740285-11739937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 132
               

               
Conread position:
               
193-527
               

               
Cow position:
               
chr21:26244777-26245098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
264, 44
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr21:9416088-9416434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 195
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr21:24642364-24642697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr21:42135778-42135431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
193-528
               

               
Cow position:
               
chr21:46264022-46264355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 11
               

               
Conread position:
               
194-350
               

               
Cow position:
               
chr21:9278219-9278385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
194-374
               

               
Cow position:
               
chr21:29979909-29979732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
194-400
               

               
Cow position:
               
chr21:42023971-42024171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
194-421
               

               
Cow position:
               
chr21:912120-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
194-421
               

               
Cow position:
               
chr21:21480336-21480114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
194-428
               

               
Cow position:
               
chr21:5137643-5137410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
194-437
               

               
Cow position:
               
chr21:27146145-27145908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 162
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr21:3763891-3763646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr21:4189681-4189937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
194-447
               

               
Cow position:
               
chr21:19196320-19196068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 184
               

               
Conread position:
               
194-504
               

               
Cow position:
               
chr21:45330761-45330446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
78, 196
               

               
Conread position:
               
194-520
               

               
Cow position:
               
chr21:37299314-37299639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
194-524
               

               
Cow position:
               
chr21:3818063-3818389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
194-525
               

               
Cow position:
               
chr21:45850864-45850525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
222, 63
               

               
Conread position:
               
194-527
               

               
Cow position:
               
chr21:38449605-38449265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 186
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr21:10151641-10151990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr21:12153982-12154315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr21:27624559-27624883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr21:34010544-34010213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
250, 37
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr21:41579594-41579941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 169
               

               
Conread position:
               
194-528
               

               
Cow position:
               
chr21:45921212-45920873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
89, 67
               

               
Conread position:
               
195-354
               

               
Cow position:
               
chr21:17410812-17410650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
195-365
               

               
Cow position:
               
chr21:33419867-33419706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
106, 29
               

               
Conread position:
               
195-371
               

               
Cow position:
               
chr21:32237145-32237318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
195-373
               

               
Cow position:
               
chr21:4080200-4080384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
195-421
               

               
Cow position:
               
chr21:9310893-9311116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
101, 74
               

               
Conread position:
               
195-428
               

               
Cow position:
               
chr21:48176674-48176901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 91
               

               
Conread position:
               
195-432
               

               
Cow position:
               
chr21:16909906-16910142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
195-437
               

               
Cow position:
               
chr21:13898036-13898274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
195-476
               

               
Cow position:
               
chr21:31702108-31701835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
195-477
               

               
Cow position:
               
chr21:10882282-10882572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
195-528
               

               
Cow position:
               
chr21:39403691-39403338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
78, 174
               

               
Conread position:
               
195-528
               

               
Cow position:
               
chr21:42384353-42384694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
69, 183
               

               
Conread position:
               
196-313
               

               
Cow position:
               
chr21:28907795-28907682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
196-410
               

               
Cow position:
               
chr21:22194262-22194048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
196-438
               

               
Cow position:
               
chr21:39450320-39450074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 185
               

               
Conread position:
               
196-457
               

               
Cow position:
               
chr21:19083752-19083491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 181
               

               
Conread position:
               
196-514
               

               
Cow position:
               
chr21:47215332-47215024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
196-520
               

               
Cow position:
               
chr21:5426792-5427114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
197-438
               

               
Cow position:
               
chr21:6764853-6764613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
197-453
               

               
Cow position:
               
chr21:8351455-8351209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
198-525
               

               
Cow position:
               
chr21:20160534-20160858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
201-447
               

               
Cow position:
               
chr21:17875340-17875097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
201-528
               

               
Cow position:
               
chr21:46894-47225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
202-489
               

               
Cow position:
               
chr21:11250720-11251015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 183
               

               
Conread position:
               
202-493
               

               
Cow position:
               
chr21:16187951-16187657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 68
               

               
Conread position:
               
202-521
               

               
Cow position:
               
chr21:10005031-10004708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 83
               

               
Conread position:
               
202-526
               

               
Cow position:
               
chr21:18041988-18041684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
207-436
               

               
Cow position:
               
chr21:43357404-43357169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
207-517
               

               
Cow position:
               
chr21:8235685-8235388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
250, 48
               

               
Conread position:
               
207-519
               

               
Cow position:
               
chr21:28626098-28626413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
207-524
               

               
Cow position:
               
chr21:48234299-48233984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
207-526
               

               
Cow position:
               
chr21:957527-957853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr21:5392683-5392348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
207-528
               

               
Cow position:
               
chr21:42007600-42007277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
208-447
               

               
Cow position:
               
chr21:6102399-6102165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
208-521
               

               
Cow position:
               
chr21:14452098-14452412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
208-524
               

               
Cow position:
               
chr21:6713662-6713342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
208-525
               

               
Cow position:
               
chr21:32339876-32339558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
208-528
               

               
Cow position:
               
chr21:17183782-17184102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
209-350
               

               
Cow position:
               
chr21:32665913-32665770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
209-379
               

               
Cow position:
               
chr21:12640195-12640369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
209-411
               

               
Cow position:
               
chr21:21216279-21216081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
209-443
               

               
Cow position:
               
chr21:23192656-23192420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 170
               

               
Conread position:
               
209-446
               

               
Cow position:
               
chr21:6833914-6834144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
209-520
               

               
Cow position:
               
chr21:12462109-12461789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
209-524
               

               
Cow position:
               
chr21:23568075-23568409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 78
               

               
Conread position:
               
209-524
               

               
Cow position:
               
chr21:26648145-26647835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
209-527
               

               
Cow position:
               
chr21:11359899-11360210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
209-528
               

               
Cow position:
               
chr21:28923978-28924295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
210-428
               

               
Cow position:
               
chr21:39809762-39809971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
210-447
               

               
Cow position:
               
chr21:44733299-44733077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
210-524
               

               
Cow position:
               
chr21:20152810-20153135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
211-437
               

               
Cow position:
               
chr21:14515709-14515927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 166
               

               
Conread position:
               
211-438
               

               
Cow position:
               
chr21:34736894-34737117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 49
               

               
Conread position:
               
211-523
               

               
Cow position:
               
chr21:12723020-12723330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
62, 116
               

               
Conread position:
               
211-527
               

               
Cow position:
               
chr21:29978899-29978576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 113
               

               
Conread position:
               
211-528
               

               
Cow position:
               
chr21:7825312-7825004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
215, 61
               

               
Conread position:
               
212-433
               

               
Cow position:
               
chr21:31511154-31511356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
212-447
               

               
Cow position:
               
chr21:17856408-17856640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
212-447
               

               
Cow position:
               
chr21:24222677-24222441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 160
               

               
Conread position:
               
212-464
               

               
Cow position:
               
chr21:35569512-35569268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
217, 55
               

               
Conread position:
               
212-504
               

               
Cow position:
               
chr21:20418825-20418521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
19, 177
               

               
Conread position:
               
212-514
               

               
Cow position:
               
chr21:23822032-23822318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
212-521
               

               
Cow position:
               
chr21:18845155-18844833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
214-429
               

               
Cow position:
               
chr21:28617454-28617669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
215-478
               

               
Cow position:
               
chr21:37886278-37886548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 107
               

               
Conread position:
               
216-370
               

               
Cow position:
               
chr21:24765157-24765312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
216-449
               

               
Cow position:
               
chr21:45866800-45867032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 50
               

               
Conread position:
               
217-353
               

               
Cow position:
               
chr21:17428368-17428507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
217-353
               

               
Cow position:
               
chr21:17696995-17696858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 75
               

               
Conread position:
               
217-353
               

               
Cow position:
               
chr21:22353365-22353226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
217-465
               

               
Cow position:
               
chr21:18941963-18941722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
217-520
               

               
Cow position:
               
chr21:34151450-34151758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
221-373
               

               
Cow position:
               
chr21:27810278-27810433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
221-452
               

               
Cow position:
               
chr21:46860230-46860018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
222-523
               

               
Cow position:
               
chr21:21077197-21077489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
224-526
               

               
Cow position:
               
chr21:30222218-30222528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
225-437
               

               
Cow position:
               
chr21:36789671-36789881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 78
               

               
Conread position:
               
234-421
               

               
Cow position:
               
chr21:4568167-4568355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
238-514
               

               
Cow position:
               
chr21:45906730-45906452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
238-518
               

               
Cow position:
               
chr21:10561693-10561409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
213, 27
               

               
Conread position:
               
240-373
               

               
Cow position:
               
chr21:24094863-24094723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
240-446
               

               
Cow position:
               
chr21:25629019-25628815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr21:11639911-11640118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr21:18155681-18155470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 151
               

               
Conread position:
               
240-507
               

               
Cow position:
               
chr21:20192790-20193059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
240-513
               

               
Cow position:
               
chr21:35354422-35354703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
33, 138
               

               
Conread position:
               
240-528
               

               
Cow position:
               
chr21:10673024-10673306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
200, 25
               

               
Conread position:
               
243-438
               

               
Cow position:
               
chr21:13754685-13754873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr21:23980290-23980086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
243-524
               

               
Cow position:
               
chr21:30835260-30835544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
244-424
               

               
Cow position:
               
chr21:18414943-18415126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
244-439
               

               
Cow position:
               
chr21:47067000-47066810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
244-454
               

               
Cow position:
               
chr21:5985425-5985216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 116
               

               
Conread position:
               
249-447
               

               
Cow position:
               
chr21:2260460-2260269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
249-524
               

               
Cow position:
               
chr21:22465095-22465371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
249-527
               

               
Cow position:
               
chr21:8206670-8206954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
252-447
               

               
Cow position:
               
chr21:2904572-2904382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
255-447
               

               
Cow position:
               
chr21:46552198-46552007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
255-507
               

               
Cow position:
               
chr21:22121426-22121667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
256-528
               

               
Cow position:
               
chr21:44658487-44658752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
260-518
               

               
Cow position:
               
chr21:31090511-31090260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
263-523
               

               
Cow position:
               
chr21:44214039-44214306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 0
               

               
Conread position:
               
272-447
               

               
Cow position:
               
chr21:13495464-13495639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 121
               

               
Conread position:
               
273-438
               

               
Cow position:
               
chr21:37014478-37014319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 88
               

               
Conread position:
               
273-439
               

               
Cow position:
               
chr21:33360109-33359947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
273-445
               

               
Cow position:
               
chr21:9940269-9940094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
273-526
               

               
Cow position:
               
chr21:4280747-4280492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
175, 59
               

               
Conread position:
               
273-528
               

               
Cow position:
               
chr21:6997863-6998132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
274-520
               

               
Cow position:
               
chr21:45262886-45262633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
274-527
               

               
Cow position:
               
chr21:47714081-47713826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
274-528
               

               
Cow position:
               
chr21:47719373-47719118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
275-520
               

               
Cow position:
               
chr21:33414158-33413911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
99, 79
               

               
Conread position:
               
275-524
               

               
Cow position:
               
chr21:16569828-16570080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
87, 100
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr21:22210317-22210062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
276-521
               

               
Cow position:
               
chr21:40266049-40266299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 103
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr21:1511219-1511474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr21:8349256-8349513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr21:15544290-15544045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
83, 112
               

               
Conread position:
               
278-447
               

               
Cow position:
               
chr21:40432379-40432541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
280-435
               

               
Cow position:
               
chr21:27079907-27079752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
281-438
               

               
Cow position:
               
chr21:7394314-7394471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
281-527
               

               
Cow position:
               
chr21:2810229-2809981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 64
               

               
Conread position:
               
284-528
               

               
Cow position:
               
chr21:12339575-12339808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 27
               

               
Conread position:
               
285-447
               

               
Cow position:
               
chr21:297689-297850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
286-526
               

               
Cow position:
               
chr21:8426379-8426628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
286-527
               

               
Cow position:
               
chr21:11779592-11779358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
290-503
               

               
Cow position:
               
chr21:35899786-35900001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
154, 86
               

               
Conread position:
               
291-528
               

               
Cow position:
               
chr21:868982-868738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
157, 68
               

               
Conread position:
               
294-448
               

               
Cow position:
               
chr21:41598064-41598217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
294-528
               

               
Cow position:
               
chr21:19513811-19514038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
300-512
               

               
Cow position:
               
chr21:47363786-47363565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
132, 76
               

               
Conread position:
               
300-521
               

               
Cow position:
               
chr21:28919572-28919350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 84
               

               
Conread position:
               
304-528
               

               
Cow position:
               
chr21:28030243-28030473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 81
               

               
Conread position:
               
305-527
               

               
Cow position:
               
chr21:742245-742461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
305-527
               

               
Cow position:
               
chr21:22014144-22014374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
306-520
               

               
Cow position:
               
chr21:41522449-41522238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 70
               

               
Conread position:
               
315-520
               

               
Cow position:
               
chr21:29014593-29014382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
315-521
               

               
Cow position:
               
chr21:734563-734767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 61
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr21:14126263-14126458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
325-528
               

               
Cow position:
               
chr21:71561-71772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
331-520
               

               
Cow position:
               
chr21:829227-829033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
333-519
               

               
Cow position:
               
chr21:9256672-9256488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
341-505
               

               
Cow position:
               
chr21:20183064-20183233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr21:674677-674858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr21:30980585-30980393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr21:41046797-41046991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
345-524
               

               
Cow position:
               
chr21:7169683-7169869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
346-521
               

               
Cow position:
               
chr21:7394287-7394111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
348-528
               

               
Cow position:
               
chr21:36508241-36508419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
350-526
               

               
Cow position:
               
chr21:19868955-19868772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
351-525
               

               
Cow position:
               
chr21:12104367-12104550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
359-528
               

               
Cow position:
               
chr21:19360166-19359991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
359-528
               

               
Cow position:
               
chr21:36682332-36682510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
372-524
               

               
Cow position:
               
chr21:8625199-8625354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
386-528
               

               
Cow position:
               
chr21:16498554-16498701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
387-521
               

               
Cow position:
               
chr21:5342058-5341916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr21:11057837-11057696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               
Show alignments to all cow chromosomes.