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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_011841.5.5
        

               
Conread position:
               
1-121
               

               
Cow position:
               
chr1:33392183-33392299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr1:72183772-72183650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr1:5492232-5492361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr1:92035204-92035345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:67001316-67001458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr1:39889245-39889391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr1:32564822-32564670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr1:4453673-4453520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:87722581-87722418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:81766615-81766453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:3377736-3377894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:11018541-11018709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:17765485-17765653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:24922415-24922250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:26607459-26607291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:86363576-86363744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:90865139-90865310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:101010809-101010641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:475284-475452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:4208807-4208638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:7196113-7195944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:12058414-12058245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:20648546-20648715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:22617295-22617132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:25780393-25780561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:29902082-29901918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:57635714-57635543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:58356627-58356458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:59203157-59202988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:70069772-70069953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:70381440-70381271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:76852521-76852690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:89767490-89767330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:99108121-99107952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:22778778-22778562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:1023693-1023461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr1:31239122-31238877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:100509857-100510116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr1:33039926-33039654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 18
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr1:16338122-16337853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:58171845-58172117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:57526382-57526668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr1:27494070-27494358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:9262999-9262699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:55493958-55493658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:90605770-90605470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:100709177-100709477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:31363007-31362708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:53368314-53368618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr1:30103471-30103165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr1:31106287-31105981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:8745604-8745910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:62731906-62732221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr1:18487071-18486758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:88389434-88389743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:19162075-19162393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:38383466-38383139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:60342157-60342499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:12803199-12803532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr1:12872347-12871997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr1:56141247-56140895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr1:47119063-47119427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr1:52171702-52171325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr1:92008379-92008735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 228
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr1:8556792-8557158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr1:63035728-63036094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr1:46802610-46802972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr1:52067733-52068102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:57694541-57694170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:86451446-86451806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
181, 213
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:48249821-48250210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:54296037-54295647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr1:73403892-73404277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 65
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr1:67975098-67974725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:101787828-101787436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr1:100420706-100421108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr1:55220407-55220001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr1:79589965-79590366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr1:70038135-70037730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr1:43024498-43024923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr1:14562106-14561695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
141, 21
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr1:93112260-93111829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr1:62525992-62526389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
202, 17
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr1:16974021-16973592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr1:44701677-44701255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:12468684-12468268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 15
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr1:88027934-88028346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 17
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr1:20543332-20543755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr1:82519016-82518600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
1-405
               

               
Cow position:
               
chr1:92279687-92279288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 17
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr1:61591910-61591498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr1:85630442-85630867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr1:7324177-7324602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:53519771-53520196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:57744121-57743708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:85337983-85338393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:89111938-89112354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:56726271-56726691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:91890285-91889870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr1:82369526-82369950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr1:3339773-3340205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr1:31264370-31263967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr1:40510150-40509722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr1:22727399-22727838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr1:88563805-88563386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:47454871-47454441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr1:21134001-21133592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 18
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr1:22012856-22012422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
1-419
               

               
Cow position:
               
chr1:42888372-42887951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr1:15149537-15149099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr1:29428703-29429148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr1:71976483-71976915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr1:72086703-72087143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr1:13251410-13251000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 17
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr1:24654938-24655373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr1:29037648-29038085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr1:57759021-57759454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:11771683-11771237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:11854846-11854404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:32961397-32960953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:35598704-35598266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:41094008-41093582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:53309550-53309118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:56170066-56170505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:67832030-67831590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:82909723-82909289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:83169547-83169988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr1:86705258-86705682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 17
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:19236391-19235950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:30034734-30035161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:49267989-49268427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:63341366-63340925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:71794639-71795080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:73565372-73564931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr1:73967618-73968059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:3383211-3382771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:3970158-3969738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:5505045-5505486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:6197170-6196732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:7405777-7406219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:7711889-7712322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:8471056-8470615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:8517964-8517522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:8602864-8602428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:8828127-8828568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:9261618-9262044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 25
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:9595833-9595398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:10725730-10726171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:11199525-11199083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:11666456-11665993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:13438227-13438667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:17033486-17033047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:18087535-18087977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:18195718-18196143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:18962624-18962201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:19158351-19157909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:19775985-19775544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:20527266-20527707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:20831988-20832430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:20846907-20846465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:21377452-21377010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:25053481-25053039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:25552913-25553351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:26537080-26536638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:26588057-26588498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:26722556-26722116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:26811966-26811526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:28520757-28521199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:28714145-28714587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:28812136-28811694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:28876204-28876645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:31351660-31351221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:33548288-33547853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:40058211-40058641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:40681625-40681183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:46613186-46612749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:48345291-48345718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:48811088-48810646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:51883721-51884149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:52355566-52355125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:52755427-52754986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:54472308-54471866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:55044156-55043716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:55273936-55273496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:56205704-56205266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:56425017-56425458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:57505897-57506339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:57570937-57571380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:57574479-57574039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:57659725-57660148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:58340028-58340462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:60251320-60250878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:61096603-61097048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:61331856-61331415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:61340214-61339772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:62927575-62928017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:63045991-63046433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:63602683-63602240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:65389665-65390105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:66490687-66491125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:66972051-66971613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:67005986-67006426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:67078718-67078279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:68145865-68145423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:68602524-68602082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:68610663-68610230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:69406264-69406706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:69504268-69503826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:69671515-69671073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:69769925-69770366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:72986564-72987004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:73064229-73063790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:75403002-75403442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:76878138-76878579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:77104255-77103821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:77554891-77554455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:77747850-77748291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:78587352-78586910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:78921907-78921465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:79553602-79554043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:80564971-80564529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:81302221-81302682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:83136066-83136483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:84446785-84447230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:85777353-85776914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:86545031-86544591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:88178964-88179407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:89431509-89431951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:89493124-89492689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:89793059-89793501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:90912935-90913377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:91105148-91105586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:91673338-91673779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:91902125-91902567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:94662759-94663201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:98354289-98353847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:99118590-99119032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:99916546-99916987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:102431633-102431195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 21
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr1:31534958-31535401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr1:68818796-68818361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr1:70051347-70051777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr1:85807504-85807083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr1:93857629-93858071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr1:17113353-17112908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr1:88984342-88983938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:11289283-11288836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr1:10005874-10005437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr1:37542183-37541757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:16797989-16797551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:19441421-19440987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:20867499-20867056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:30531914-30531467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:38279634-38279184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:53371464-53371922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr1:100451561-100451125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:11324614-11325042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
196, 31
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:18024707-18024266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:18137325-18136887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:19146060-19145606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:21353211-21352762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:23098746-23099185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:24572029-24571593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:24594715-24595139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:30065484-30065928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:31415117-31414668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:52053927-52054375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:52864168-52863738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 19
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:53311336-53311794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:53396811-53397230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:54933034-54933482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:56745981-56746439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:57679250-57678828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 20
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:58192696-58192251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:63045043-63044603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:63048685-63049133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:70388208-70387774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:72307214-72306803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
197, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:72804403-72803964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:72812267-72812710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:73443744-73443318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:77656655-77657094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:79633446-79633001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:85143118-85142661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:89090430-89089982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:89484221-89484646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:98617778-98618218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:99572458-99572020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:99628948-99628528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:101833503-101833948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:102321995-102321564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:24562642-24562206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:33716066-33716516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:71792030-71792485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:101130902-101130482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 18
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr1:21576655-21577100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr1:13405279-13404836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:22481554-22481102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:28677176-28677608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:55145151-55145605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr1:20001886-20001438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 17
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr1:56631495-56631940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr1:74536591-74536144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr1:95474794-95474340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr1:61747060-61746620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 17
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr1:21132758-21132314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-450
               

               
Cow position:
               
chr1:57958451-57957982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr1:57970490-57970037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr1:33443061-33442599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
2-131
               

               
Cow position:
               
chr1:4375834-4375707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-140
               

               
Cow position:
               
chr1:10033617-10033755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr1:17436567-17436400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr1:26142101-26141932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr1:68252073-68252241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr1:51393200-51393476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr1:98534703-98535001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 156
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr1:81357540-81357232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
2-340
               

               
Cow position:
               
chr1:77866686-77867020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 16
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr1:73384576-73384956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
163, 16
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr1:101524279-101523884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr1:65031705-65031289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr1:102552124-102552547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 7
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr1:30079050-30079486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 16
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr1:54476908-54477326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr1:86599908-86599466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 16
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr1:16573803-16573383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
2-423
               

               
Cow position:
               
chr1:56644771-56644343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr1:30372012-30372442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 16
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr1:31392186-31391753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr1:57363225-57362785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 16
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr1:59483756-59483315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr1:16838424-16838865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr1:82479091-82479532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
2-428
               

               
Cow position:
               
chr1:85323336-85323757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 83
               

               
Conread position:
               
2-429
               

               
Cow position:
               
chr1:76860914-76860474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr1:67913181-67913637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 16
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:20797934-20798379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:30883546-30883099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:53649758-53650204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr1:42739515-42739668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr1:72090187-72089826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 143
               

               
Conread position:
               
3-401
               

               
Cow position:
               
chr1:56439303-56438907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr1:21677909-21678323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr1:51444347-51444774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr1:66685406-66685008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
3-409
               

               
Cow position:
               
chr1:99689871-99690294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr1:10011206-10010795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
3-419
               

               
Cow position:
               
chr1:41517727-41517326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr1:38711820-38712260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr1:76872990-76873426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr1:86593196-86592758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 15
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr1:61563145-61563604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
4-424
               

               
Cow position:
               
chr1:14529349-14528918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 14
               

               
Conread position:
               
4-424
               

               
Cow position:
               
chr1:47079071-47078632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 15
               

               
Conread position:
               
6-402
               

               
Cow position:
               
chr1:28282897-28283305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 81
               

               
Conread position:
               
6-402
               

               
Cow position:
               
chr1:50592818-50593210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 13
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chr1:51981412-51981814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr1:33854379-33854814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 13
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr1:72766926-72766490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 187
               

               
Conread position:
               
6-429
               

               
Cow position:
               
chr1:43449390-43448958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 12
               

               
Conread position:
               
6-431
               

               
Cow position:
               
chr1:53578167-53578610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 80
               

               
Conread position:
               
7-147
               

               
Cow position:
               
chr1:22252800-22252940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
7-277
               

               
Cow position:
               
chr1:9377369-9377085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 236
               

               
Conread position:
               
7-345
               

               
Cow position:
               
chr1:97285551-97285193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
7-402
               

               
Cow position:
               
chr1:56856948-56857350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
7-405
               

               
Cow position:
               
chr1:45021345-45021754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr1:25088561-25088140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 201
               

               
Conread position:
               
7-414
               

               
Cow position:
               
chr1:57120712-57120302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 11
               

               
Conread position:
               
7-416
               

               
Cow position:
               
chr1:31498232-31498632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
7-422
               

               
Cow position:
               
chr1:6165099-6165521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 11
               

               
Conread position:
               
7-425
               

               
Cow position:
               
chr1:71559632-71559201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 12
               

               
Conread position:
               
7-430
               

               
Cow position:
               
chr1:8213866-8214293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
154, 11
               

               
Conread position:
               
7-431
               

               
Cow position:
               
chr1:21114309-21113869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
7-431
               

               
Cow position:
               
chr1:22226756-22227162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
389, 11
               

               
Conread position:
               
7-431
               

               
Cow position:
               
chr1:30494678-30495108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 315
               

               
Conread position:
               
7-431
               

               
Cow position:
               
chr1:38417935-38418367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 11
               

               
Conread position:
               
7-431
               

               
Cow position:
               
chr1:58418786-58419225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 379
               

               
Conread position:
               
8-140
               

               
Cow position:
               
chr1:3743134-3743002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-169
               

               
Cow position:
               
chr1:101797706-101797863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr1:29365519-29365818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 11
               

               
Conread position:
               
8-358
               

               
Cow position:
               
chr1:24740737-24741088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
8-359
               

               
Cow position:
               
chr1:81001242-81000899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr1:22837866-22837514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
8-374
               

               
Cow position:
               
chr1:59248642-59248273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr1:58218218-58218609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr1:67317819-67318216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr1:71920185-71920593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 10
               

               
Conread position:
               
8-406
               

               
Cow position:
               
chr1:54116361-54116771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 12
               

               
Conread position:
               
8-424
               

               
Cow position:
               
chr1:23578692-23578264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
143, 388
               

               
Conread position:
               
8-424
               

               
Cow position:
               
chr1:25120157-25119738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
161, 44
               

               
Conread position:
               
8-427
               

               
Cow position:
               
chr1:73463077-73463516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
8-428
               

               
Cow position:
               
chr1:51893279-51892850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
8-430
               

               
Cow position:
               
chr1:77165955-77166381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
8-430
               

               
Cow position:
               
chr1:99865034-99865471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr1:7837640-7837208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 121
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr1:88393472-88393056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
9-327
               

               
Cow position:
               
chr1:21458806-21459122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr1:81868361-81868024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
9-406
               

               
Cow position:
               
chr1:23057386-23057802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 92
               

               
Conread position:
               
9-616
               

               
Cow position:
               
chr1:31707596-31708220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
10-168
               

               
Cow position:
               
chr1:59014292-59014129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
10-250
               

               
Cow position:
               
chr1:38478420-38478673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 8
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chr1:44677786-44678155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
10-424
               

               
Cow position:
               
chr1:56666215-56666648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 9
               

               
Conread position:
               
10-431
               

               
Cow position:
               
chr1:61220549-61220986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
11-117
               

               
Cow position:
               
chr1:83108495-83108389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-288
               

               
Cow position:
               
chr1:28414101-28413818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
11-320
               

               
Cow position:
               
chr1:30440281-30440592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 8
               

               
Conread position:
               
11-406
               

               
Cow position:
               
chr1:13718719-13718307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 204
               

               
Conread position:
               
11-409
               

               
Cow position:
               
chr1:17292746-17292332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
11-424
               

               
Cow position:
               
chr1:88676570-88677017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 332
               

               
Conread position:
               
11-424
               

               
Cow position:
               
chr1:98656840-98656421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 194
               

               
Conread position:
               
12-148
               

               
Cow position:
               
chr1:9233751-9233885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
12-431
               

               
Cow position:
               
chr1:24440934-24440507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 84
               

               
Conread position:
               
12-431
               

               
Cow position:
               
chr1:96194028-96193605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 71
               

               
Conread position:
               
12-438
               

               
Cow position:
               
chr1:82863932-82864364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
13-387
               

               
Cow position:
               
chr1:22529689-22529301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
13-431
               

               
Cow position:
               
chr1:58440180-58439744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 122
               

               
Conread position:
               
14-405
               

               
Cow position:
               
chr1:46838908-46839307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 5
               

               
Conread position:
               
16-300
               

               
Cow position:
               
chr1:21785603-21785899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
16-328
               

               
Cow position:
               
chr1:34684603-34684928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
16-358
               

               
Cow position:
               
chr1:31191303-31190950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
16-431
               

               
Cow position:
               
chr1:24580513-24580955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
16-431
               

               
Cow position:
               
chr1:34858571-34858141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 203
               

               
Conread position:
               
16-434
               

               
Cow position:
               
chr1:58197333-58196900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 209
               

               
Conread position:
               
17-171
               

               
Cow position:
               
chr1:57391729-57391576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
17-171
               

               
Cow position:
               
chr1:72114074-72114228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-264
               

               
Cow position:
               
chr1:40920261-40920520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
17-288
               

               
Cow position:
               
chr1:66775561-66775844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
17-339
               

               
Cow position:
               
chr1:81342659-81342994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
17-346
               

               
Cow position:
               
chr1:23040216-23040538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 90
               

               
Conread position:
               
17-405
               

               
Cow position:
               
chr1:81926061-81925653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
156, 96
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr1:29606928-29606513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
145, 21
               

               
Conread position:
               
17-414
               

               
Cow position:
               
chr1:89186332-89185926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 41
               

               
Conread position:
               
17-423
               

               
Cow position:
               
chr1:17938631-17938206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr1:61342581-61342162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 93
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr1:76618352-76617927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 23
               

               
Conread position:
               
17-430
               

               
Cow position:
               
chr1:20079031-20078606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
17-430
               

               
Cow position:
               
chr1:50939894-50939468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
65, 192
               

               
Conread position:
               
17-430
               

               
Cow position:
               
chr1:68846587-68846168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 102
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:5420680-5420256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:18282098-18282527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 211
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:29461451-29461881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 137
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:51967375-51967796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 380
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:79914039-79914466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
183, 23
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:82921017-82920587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 103
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr1:88530848-88530433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 73
               

               
Conread position:
               
17-432
               

               
Cow position:
               
chr1:2764238-2764677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 126
               

               
Conread position:
               
17-432
               

               
Cow position:
               
chr1:72139330-72139750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
17-436
               

               
Cow position:
               
chr1:37299860-37299432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
18-353
               

               
Cow position:
               
chr1:8528299-8527938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
18-424
               

               
Cow position:
               
chr1:46820737-46821161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 124
               

               
Conread position:
               
18-425
               

               
Cow position:
               
chr1:61203507-61203933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 68
               

               
Conread position:
               
18-430
               

               
Cow position:
               
chr1:61748328-61747899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 205
               

               
Conread position:
               
18-430
               

               
Cow position:
               
chr1:81328662-81329078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
18-447
               

               
Cow position:
               
chr1:42056733-42057163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
153, 11
               

               
Conread position:
               
19-138
               

               
Cow position:
               
chr1:46411164-46411283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-275
               

               
Cow position:
               
chr1:33656062-33655792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
19-422
               

               
Cow position:
               
chr1:7162685-7162262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
19-424
               

               
Cow position:
               
chr1:89234909-89234485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
20-408
               

               
Cow position:
               
chr1:43568386-43567976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
20-438
               

               
Cow position:
               
chr1:9513246-9512826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
153, 272
               

               
Conread position:
               
21-386
               

               
Cow position:
               
chr1:62141803-62141435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
173, 138
               

               
Conread position:
               
21-405
               

               
Cow position:
               
chr1:71135027-71135426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 194
               

               
Conread position:
               
21-424
               

               
Cow position:
               
chr1:11874513-11874102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
21-424
               

               
Cow position:
               
chr1:55779997-55780416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 88
               

               
Conread position:
               
22-395
               

               
Cow position:
               
chr1:79113546-79113929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 217
               

               
Conread position:
               
23-271
               

               
Cow position:
               
chr1:48036426-48036687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 211
               

               
Conread position:
               
23-326
               

               
Cow position:
               
chr1:13054811-13055119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr1:49133046-49132673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 367
               

               
Conread position:
               
23-394
               

               
Cow position:
               
chr1:71676930-71676570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
23-403
               

               
Cow position:
               
chr1:26446284-26446681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
23-416
               

               
Cow position:
               
chr1:51875683-51875284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
25-171
               

               
Cow position:
               
chr1:2006566-2006420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
25-431
               

               
Cow position:
               
chr1:27309947-27309538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 242
               

               
Conread position:
               
26-140
               

               
Cow position:
               
chr1:22347257-22347369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
26-300
               

               
Cow position:
               
chr1:22629708-22629428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
26-405
               

               
Cow position:
               
chr1:6241143-6240753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 199
               

               
Conread position:
               
26-423
               

               
Cow position:
               
chr1:17009593-17009185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
26-424
               

               
Cow position:
               
chr1:98989279-98988879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
26-424
               

               
Cow position:
               
chr1:99675206-99674788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
26-431
               

               
Cow position:
               
chr1:90393624-90393202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 20
               

               
Conread position:
               
26-436
               

               
Cow position:
               
chr1:7669918-7670324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
88, 133
               

               
Conread position:
               
27-131
               

               
Cow position:
               
chr1:52335625-52335523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
27-424
               

               
Cow position:
               
chr1:100888376-100887960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 126
               

               
Conread position:
               
28-429
               

               
Cow position:
               
chr1:100340437-100340040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
29-278
               

               
Cow position:
               
chr1:9308885-9308624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 122
               

               
Conread position:
               
29-424
               

               
Cow position:
               
chr1:85795080-85795490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 198
               

               
Conread position:
               
29-430
               

               
Cow position:
               
chr1:77389837-77389422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
112, 168
               

               
Conread position:
               
29-431
               

               
Cow position:
               
chr1:13579635-13579223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
29-431
               

               
Cow position:
               
chr1:71690704-71691108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
31-423
               

               
Cow position:
               
chr1:70535330-70534918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 232
               

               
Conread position:
               
32-431
               

               
Cow position:
               
chr1:3931206-3930785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
35-408
               

               
Cow position:
               
chr1:33987688-33987292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
35-433
               

               
Cow position:
               
chr1:21090605-21091021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
37-359
               

               
Cow position:
               
chr1:29411069-29410727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
37-424
               

               
Cow position:
               
chr1:14240926-14240519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
37-431
               

               
Cow position:
               
chr1:82091037-82091450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
37-431
               

               
Cow position:
               
chr1:102814614-102815028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
38-421
               

               
Cow position:
               
chr1:31814164-31814559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
150, 11
               

               
Conread position:
               
38-430
               

               
Cow position:
               
chr1:31342255-31341855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
39-166
               

               
Cow position:
               
chr1:61140564-61140691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
39-453
               

               
Cow position:
               
chr1:55328084-55327660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
40-171
               

               
Cow position:
               
chr1:80902291-80902162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
40-406
               

               
Cow position:
               
chr1:53487623-53488002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
134, 121
               

               
Conread position:
               
41-424
               

               
Cow position:
               
chr1:23861564-23861161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
42-431
               

               
Cow position:
               
chr1:21453722-21453353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
44-392
               

               
Cow position:
               
chr1:89263458-89263097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
44-419
               

               
Cow position:
               
chr1:39250291-39249896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 109
               

               
Conread position:
               
46-424
               

               
Cow position:
               
chr1:31317324-31316930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
148, 132
               

               
Conread position:
               
46-431
               

               
Cow position:
               
chr1:37324118-37323727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 176
               

               
Conread position:
               
48-422
               

               
Cow position:
               
chr1:30033435-30033812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
50-170
               

               
Cow position:
               
chr1:56475125-56475247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
50-327
               

               
Cow position:
               
chr1:97624921-97624616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 184
               

               
Conread position:
               
50-431
               

               
Cow position:
               
chr1:58528426-58528826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 155
               

               
Conread position:
               
50-431
               

               
Cow position:
               
chr1:88328325-88327930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 51
               

               
Conread position:
               
50-432
               

               
Cow position:
               
chr1:99117168-99117570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 300
               

               
Conread position:
               
51-299
               

               
Cow position:
               
chr1:23969636-23969375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 146
               

               
Conread position:
               
52-414
               

               
Cow position:
               
chr1:39480328-39479954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 165
               

               
Conread position:
               
52-431
               

               
Cow position:
               
chr1:22789557-22789952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 367
               

               
Conread position:
               
52-431
               

               
Cow position:
               
chr1:42875500-42875105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 255
               

               
Conread position:
               
55-409
               

               
Cow position:
               
chr1:45006133-45006489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 178
               

               
Conread position:
               
55-424
               

               
Cow position:
               
chr1:57946103-57946480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 78
               

               
Conread position:
               
56-327
               

               
Cow position:
               
chr1:84284254-84283964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
56-425
               

               
Cow position:
               
chr1:4336923-4337314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 173
               

               
Conread position:
               
57-404
               

               
Cow position:
               
chr1:72864110-72864473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 158
               

               
Conread position:
               
57-414
               

               
Cow position:
               
chr1:93948503-93948127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 90
               

               
Conread position:
               
58-407
               

               
Cow position:
               
chr1:31400268-31399928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
58-431
               

               
Cow position:
               
chr1:73762383-73761991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
60-438
               

               
Cow position:
               
chr1:76749228-76748827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
61-424
               

               
Cow position:
               
chr1:73440131-73440514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
62-369
               

               
Cow position:
               
chr1:59634659-59634972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
62-422
               

               
Cow position:
               
chr1:25178857-25178488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
62-431
               

               
Cow position:
               
chr1:51980153-51980526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 55
               

               
Conread position:
               
63-171
               

               
Cow position:
               
chr1:10466566-10466674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
64-453
               

               
Cow position:
               
chr1:98789035-98789434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 360
               

               
Conread position:
               
68-430
               

               
Cow position:
               
chr1:69287225-69286857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
70-197
               

               
Cow position:
               
chr1:24203236-24203104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
77-431
               

               
Cow position:
               
chr1:85773389-85773760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 190
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr1:33899723-33900087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 128
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr1:55159199-55158835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
79-422
               

               
Cow position:
               
chr1:70864441-70864788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
79-449
               

               
Cow position:
               
chr1:50764343-50764718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
81-424
               

               
Cow position:
               
chr1:21258414-21258054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
82-305
               

               
Cow position:
               
chr1:81860324-81860087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
82-425
               

               
Cow position:
               
chr1:67289825-67290166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 51
               

               
Conread position:
               
83-356
               

               
Cow position:
               
chr1:37421106-37420838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
84-402
               

               
Cow position:
               
chr1:38400836-38401145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
237, 49
               

               
Conread position:
               
85-421
               

               
Cow position:
               
chr1:100591583-100591228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
85-430
               

               
Cow position:
               
chr1:40532679-40532336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
85-431
               

               
Cow position:
               
chr1:24781289-24780927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
75, 44
               

               
Conread position:
               
86-421
               

               
Cow position:
               
chr1:36646261-36645911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 315
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr1:34533432-34533789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
89-398
               

               
Cow position:
               
chr1:100536345-100536669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
89-431
               

               
Cow position:
               
chr1:46694713-46694356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
90-424
               

               
Cow position:
               
chr1:16819806-16820154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 192
               

               
Conread position:
               
90-438
               

               
Cow position:
               
chr1:68812719-68812363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 162
               

               
Conread position:
               
91-335
               

               
Cow position:
               
chr1:40964951-40964688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
91-415
               

               
Cow position:
               
chr1:20378401-20378054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
91-424
               

               
Cow position:
               
chr1:79295995-79296352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
92-382
               

               
Cow position:
               
chr1:54163889-54163582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
93-424
               

               
Cow position:
               
chr1:31646427-31646081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 280
               

               
Conread position:
               
93-428
               

               
Cow position:
               
chr1:73510370-73510035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chr1:86506143-86505798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
94-415
               

               
Cow position:
               
chr1:99582259-99581917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
94-431
               

               
Cow position:
               
chr1:38545525-38545162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 244
               

               
Conread position:
               
95-406
               

               
Cow position:
               
chr1:73010183-73010514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
95-424
               

               
Cow position:
               
chr1:62508050-62507697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 260
               

               
Conread position:
               
96-431
               

               
Cow position:
               
chr1:67013226-67013561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
98-424
               

               
Cow position:
               
chr1:39235301-39234959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 316
               

               
Conread position:
               
98-424
               

               
Cow position:
               
chr1:52371174-52371520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
98-424
               

               
Cow position:
               
chr1:52379495-52379841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
98-430
               

               
Cow position:
               
chr1:40088577-40088932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
101-395
               

               
Cow position:
               
chr1:29656391-29656707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 267
               

               
Conread position:
               
101-424
               

               
Cow position:
               
chr1:93850506-93850849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
101-425
               

               
Cow position:
               
chr1:92921031-92920688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 338
               

               
Conread position:
               
101-431
               

               
Cow position:
               
chr1:42054352-42054025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
101-431
               

               
Cow position:
               
chr1:57397108-57396768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
101-431
               

               
Cow position:
               
chr1:102783744-102784082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 180
               

               
Conread position:
               
102-426
               

               
Cow position:
               
chr1:2205226-2204917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
187, 72
               

               
Conread position:
               
103-285
               

               
Cow position:
               
chr1:72806596-72806792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
103-424
               

               
Cow position:
               
chr1:79334780-79334439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
104-424
               

               
Cow position:
               
chr1:64942328-64942001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 200
               

               
Conread position:
               
104-431
               

               
Cow position:
               
chr1:32912715-32913058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
106-422
               

               
Cow position:
               
chr1:7738924-7739249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
56, 175
               

               
Conread position:
               
107-424
               

               
Cow position:
               
chr1:77924692-77925029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
108-336
               

               
Cow position:
               
chr1:64595098-64594851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
109-424
               

               
Cow position:
               
chr1:12375091-12374756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
109-424
               

               
Cow position:
               
chr1:95456565-95456899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 239
               

               
Conread position:
               
112-424
               

               
Cow position:
               
chr1:17188024-17187692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
112-431
               

               
Cow position:
               
chr1:72103332-72103647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
112-432
               

               
Cow position:
               
chr1:61282654-61282975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
113-424
               

               
Cow position:
               
chr1:2989700-2990031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
113-424
               

               
Cow position:
               
chr1:18698646-18698978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
113-431
               

               
Cow position:
               
chr1:63239911-63240246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 291
               

               
Conread position:
               
114-424
               

               
Cow position:
               
chr1:86496507-86496837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
115-424
               

               
Cow position:
               
chr1:79453541-79453212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
121-424
               

               
Cow position:
               
chr1:16117174-16116851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
123-424
               

               
Cow position:
               
chr1:17248436-17248115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
128-424
               

               
Cow position:
               
chr1:46930710-46930406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
130-431
               

               
Cow position:
               
chr1:79255229-79255539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
142-424
               

               
Cow position:
               
chr1:74938994-74939271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
155-438
               

               
Cow position:
               
chr1:31515841-31515553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 234
               

               
Conread position:
               
158-371
               

               
Cow position:
               
chr1:22909142-22909359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 72
               

               
Conread position:
               
159-424
               

               
Cow position:
               
chr1:30281551-30281277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 190
               

               
Conread position:
               
159-424
               

               
Cow position:
               
chr1:83060368-83060094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
159-431
               

               
Cow position:
               
chr1:92196250-92196528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
162-402
               

               
Cow position:
               
chr1:22730293-22730051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
162-431
               

               
Cow position:
               
chr1:4375508-4375248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 95
               

               
Conread position:
               
162-437
               

               
Cow position:
               
chr1:52510838-52510558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
164-320
               

               
Cow position:
               
chr1:10469041-10468884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
164-402
               

               
Cow position:
               
chr1:28176037-28176278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
164-405
               

               
Cow position:
               
chr1:61727798-61727558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
149, 79
               

               
Conread position:
               
164-407
               

               
Cow position:
               
chr1:73870133-73870384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
164-408
               

               
Cow position:
               
chr1:61662256-61662006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
164-423
               

               
Cow position:
               
chr1:10033819-10034074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
164-424
               

               
Cow position:
               
chr1:7415767-7416033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
164-424
               

               
Cow position:
               
chr1:26838236-26838495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 207
               

               
Conread position:
               
164-424
               

               
Cow position:
               
chr1:42739977-42740244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
164-424
               

               
Cow position:
               
chr1:52434306-52434570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
164-429
               

               
Cow position:
               
chr1:3263270-3263542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
164-431
               

               
Cow position:
               
chr1:2744390-2744651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
164-431
               

               
Cow position:
               
chr1:5013517-5013243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
164-431
               

               
Cow position:
               
chr1:31352345-31352078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 91
               

               
Conread position:
               
164-431
               

               
Cow position:
               
chr1:68281830-68282099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 245
               

               
Conread position:
               
164-431
               

               
Cow position:
               
chr1:82879715-82879982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
165-338
               

               
Cow position:
               
chr1:16372555-16372734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-377
               

               
Cow position:
               
chr1:21165051-21165269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-420
               

               
Cow position:
               
chr1:44079138-44078877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
165-423
               

               
Cow position:
               
chr1:19828697-19828437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-423
               

               
Cow position:
               
chr1:81308643-81308908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr1:21534980-21534713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr1:59202945-59202678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr1:66144980-66145248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr1:72590084-72589816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr1:74513861-74513595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-425
               

               
Cow position:
               
chr1:82567698-82567961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
165-429
               

               
Cow position:
               
chr1:11018737-11019000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
165-431
               

               
Cow position:
               
chr1:71044787-71045059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
165-431
               

               
Cow position:
               
chr1:89767246-89766976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 38
               

               
Conread position:
               
165-431
               

               
Cow position:
               
chr1:90622944-90622677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
165-432
               

               
Cow position:
               
chr1:22253354-22253625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 231
               

               
Conread position:
               
165-566
               

               
Cow position:
               
chr1:44127561-44127157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
9, 230
               

               
Conread position:
               
167-431
               

               
Cow position:
               
chr1:21507804-21507537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 241
               

               
Conread position:
               
168-424
               

               
Cow position:
               
chr1:66369105-66368845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 19
               

               
Conread position:
               
168-430
               

               
Cow position:
               
chr1:57671525-57671255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 253
               

               
Conread position:
               
169-430
               

               
Cow position:
               
chr1:64717606-64717338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
172-386
               

               
Cow position:
               
chr1:22389383-22389150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
172-402
               

               
Cow position:
               
chr1:5163052-5162814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
172-422
               

               
Cow position:
               
chr1:71939438-71939182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 232
               

               
Conread position:
               
172-430
               

               
Cow position:
               
chr1:33392307-33392571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 211
               

               
Conread position:
               
173-417
               

               
Cow position:
               
chr1:101008563-101008320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
173-432
               

               
Cow position:
               
chr1:4452797-4452530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr1:82860546-82860723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
174-400
               

               
Cow position:
               
chr1:42554296-42554527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
174-414
               

               
Cow position:
               
chr1:20146706-20146951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr1:9377080-9376831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr1:19056164-19056416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 208
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr1:56191127-56190871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr1:78290849-78291105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
174-424
               

               
Cow position:
               
chr1:99838060-99837803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
174-431
               

               
Cow position:
               
chr1:19483952-19483692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
174-438
               

               
Cow position:
               
chr1:32563244-32562969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
175-429
               

               
Cow position:
               
chr1:56475292-56475548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
176-378
               

               
Cow position:
               
chr1:51982737-51982949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
176-424
               

               
Cow position:
               
chr1:84448918-84449173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
176-430
               

               
Cow position:
               
chr1:4646241-4645988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 190
               

               
Conread position:
               
176-430
               

               
Cow position:
               
chr1:68950700-68950956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
176-431
               

               
Cow position:
               
chr1:4515431-4515176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 190
               

               
Conread position:
               
178-431
               

               
Cow position:
               
chr1:95766085-95765829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
17, 226
               

               
Conread position:
               
181-414
               

               
Cow position:
               
chr1:98797859-98797626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
181-431
               

               
Cow position:
               
chr1:15463151-15463406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
184-377
               

               
Cow position:
               
chr1:99106116-99105918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
187-431
               

               
Cow position:
               
chr1:29915478-29915721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
190-437
               

               
Cow position:
               
chr1:53424235-53424477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
193-369
               

               
Cow position:
               
chr1:31964764-31964584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
193-401
               

               
Cow position:
               
chr1:73431062-73430847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
193-438
               

               
Cow position:
               
chr1:99278676-99278422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
194-401
               

               
Cow position:
               
chr1:76304327-76304117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 131
               

               
Conread position:
               
194-404
               

               
Cow position:
               
chr1:4276970-4277180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
194-409
               

               
Cow position:
               
chr1:76851962-76851743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
117, 208
               

               
Conread position:
               
194-438
               

               
Cow position:
               
chr1:22515598-22515851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
201-428
               

               
Cow position:
               
chr1:57635936-57636164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
201-431
               

               
Cow position:
               
chr1:72114460-72114691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
201-431
               

               
Cow position:
               
chr1:98559232-98559468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
202-428
               

               
Cow position:
               
chr1:50273534-50273315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
203-431
               

               
Cow position:
               
chr1:24922187-24921959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
205-424
               

               
Cow position:
               
chr1:3440286-3440510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
206-431
               

               
Cow position:
               
chr1:68854279-68854506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
207-424
               

               
Cow position:
               
chr1:12057925-12057704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
207-431
               

               
Cow position:
               
chr1:94464438-94464665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
208-414
               

               
Cow position:
               
chr1:24202821-24202613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
208-422
               

               
Cow position:
               
chr1:6765771-6765557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:3932314-3932092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:10364892-10365114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:20849205-20848983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:23117882-23117662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 215
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:32795527-32795749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:34392535-34392312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:52380770-52380992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:84893888-84894111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:97076175-97075953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr1:101974081-101973859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
208-426
               

               
Cow position:
               
chr1:9525057-9524839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
208-431
               

               
Cow position:
               
chr1:19884575-19884346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 218
               

               
Conread position:
               
209-415
               

               
Cow position:
               
chr1:15332973-15333179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
194, 67
               

               
Conread position:
               
211-430
               

               
Cow position:
               
chr1:87830579-87830798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
211-431
               

               
Cow position:
               
chr1:82163470-82163242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
212-431
               

               
Cow position:
               
chr1:68252659-68252884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
213-317
               

               
Cow position:
               
chr1:6898531-6898640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
213-327
               

               
Cow position:
               
chr1:63517507-63517388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
213-397
               

               
Cow position:
               
chr1:23658739-23658550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chr1:7746264-7746464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
215-410
               

               
Cow position:
               
chr1:90391549-90391345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 153
               

               
Conread position:
               
217-422
               

               
Cow position:
               
chr1:36235420-36235208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
217-431
               

               
Cow position:
               
chr1:81320992-81320772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 131
               

               
Conread position:
               
218-306
               

               
Cow position:
               
chr1:57617720-57617632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
218-370
               

               
Cow position:
               
chr1:40061559-40061714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
218-409
               

               
Cow position:
               
chr1:41736539-41736343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
218-422
               

               
Cow position:
               
chr1:70381075-70380868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
218-424
               

               
Cow position:
               
chr1:4208163-4207951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
218-431
               

               
Cow position:
               
chr1:9438955-9438741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
77, 137
               

               
Conread position:
               
218-431
               

               
Cow position:
               
chr1:56619611-56619391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
81, 188
               

               
Conread position:
               
218-431
               

               
Cow position:
               
chr1:73018133-73017916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
221-415
               

               
Cow position:
               
chr1:71667142-71666933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
222-430
               

               
Cow position:
               
chr1:44375941-44376153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
222-431
               

               
Cow position:
               
chr1:39112046-39112260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 202
               

               
Conread position:
               
222-435
               

               
Cow position:
               
chr1:59014054-59013829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
223-424
               

               
Cow position:
               
chr1:19793043-19793246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
223-431
               

               
Cow position:
               
chr1:20098442-20098644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
79, 134
               

               
Conread position:
               
223-431
               

               
Cow position:
               
chr1:52508279-52508068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
223-431
               

               
Cow position:
               
chr1:57246437-57246652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
224-399
               

               
Cow position:
               
chr1:30234085-30234259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 70
               

               
Conread position:
               
224-421
               

               
Cow position:
               
chr1:15368295-15368095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
224-431
               

               
Cow position:
               
chr1:71081502-71081293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
8, 186
               

               
Conread position:
               
225-382
               

               
Cow position:
               
chr1:13638557-13638396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
226-422
               

               
Cow position:
               
chr1:73434160-73433958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
227-423
               

               
Cow position:
               
chr1:88266782-88266583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
227-430
               

               
Cow position:
               
chr1:29380568-29380365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
227-430
               

               
Cow position:
               
chr1:55203565-55203354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
228-401
               

               
Cow position:
               
chr1:22288346-22288524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
229-409
               

               
Cow position:
               
chr1:60279877-60280054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
229-423
               

               
Cow position:
               
chr1:49695385-49695573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
169, 56
               

               
Conread position:
               
229-424
               

               
Cow position:
               
chr1:70069064-70068863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
231-427
               

               
Cow position:
               
chr1:7196703-7196905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
232-402
               

               
Cow position:
               
chr1:15029930-15030094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
232-424
               

               
Cow position:
               
chr1:8845006-8845204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
233-371
               

               
Cow position:
               
chr1:44137473-44137330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
233-392
               

               
Cow position:
               
chr1:80563257-80563419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
233-424
               

               
Cow position:
               
chr1:21080089-21079892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
233-430
               

               
Cow position:
               
chr1:30786175-30785967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
233-431
               

               
Cow position:
               
chr1:66242710-66242510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
54, 166
               

               
Conread position:
               
234-415
               

               
Cow position:
               
chr1:29901875-29901700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
234-424
               

               
Cow position:
               
chr1:72624200-72624397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
235-415
               

               
Cow position:
               
chr1:31238835-31238650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
235-424
               

               
Cow position:
               
chr1:78796720-78796527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
237-398
               

               
Cow position:
               
chr1:1744203-1744039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
238-405
               

               
Cow position:
               
chr1:32361040-32360869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
238-431
               

               
Cow position:
               
chr1:15743176-15743375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
239-424
               

               
Cow position:
               
chr1:72807936-72808127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
242-362
               

               
Cow position:
               
chr1:4188602-4188477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
243-408
               

               
Cow position:
               
chr1:55019030-55019199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
243-416
               

               
Cow position:
               
chr1:76700383-76700208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 171
               

               
Conread position:
               
243-424
               

               
Cow position:
               
chr1:17436040-17435854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 91
               

               
Conread position:
               
243-424
               

               
Cow position:
               
chr1:69872830-69873020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
244-431
               

               
Cow position:
               
chr1:80902115-80901923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
244-431
               

               
Cow position:
               
chr1:81356928-81356739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
247-431
               

               
Cow position:
               
chr1:77461503-77461685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
249-431
               

               
Cow position:
               
chr1:74302745-74302562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
250-431
               

               
Cow position:
               
chr1:67189061-67188874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
251-424
               

               
Cow position:
               
chr1:39889447-39889627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
254-424
               

               
Cow position:
               
chr1:38478983-38479159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
255-457
               

               
Cow position:
               
chr1:21091961-21092166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
258-424
               

               
Cow position:
               
chr1:47923484-47923314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
259-424
               

               
Cow position:
               
chr1:21421282-21421110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
260-430
               

               
Cow position:
               
chr1:92881475-92881295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
261-409
               

               
Cow position:
               
chr1:68783535-68783384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
262-417
               

               
Cow position:
               
chr1:35785155-35785316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
262-424
               

               
Cow position:
               
chr1:48036430-48036262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
262-424
               

               
Cow position:
               
chr1:71124259-71124091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
263-424
               

               
Cow position:
               
chr1:1027755-1027922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
264-428
               

               
Cow position:
               
chr1:88337825-88337995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
265-423
               

               
Cow position:
               
chr1:44837135-44836970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
265-424
               

               
Cow position:
               
chr1:52941388-52941553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
265-431
               

               
Cow position:
               
chr1:81362663-81362832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
266-424
               

               
Cow position:
               
chr1:92433174-92433330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
266-432
               

               
Cow position:
               
chr1:95018684-95018511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
268-414
               

               
Cow position:
               
chr1:15049195-15049346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
268-424
               

               
Cow position:
               
chr1:30311815-30311977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
269-431
               

               
Cow position:
               
chr1:102290466-102290298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
270-431
               

               
Cow position:
               
chr1:99791805-99791979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
272-438
               

               
Cow position:
               
chr1:48731657-48731498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
131, 100
               

               
Conread position:
               
273-430
               

               
Cow position:
               
chr1:69963914-69963756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
274-430
               

               
Cow position:
               
chr1:27494633-27494794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
275-466
               

               
Cow position:
               
chr1:90605460-90605270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
276-431
               

               
Cow position:
               
chr1:34684900-34685050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
280-431
               

               
Cow position:
               
chr1:28413431-28413282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 117
               

               
Conread position:
               
286-430
               

               
Cow position:
               
chr1:21132448-21132302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
290-424
               

               
Cow position:
               
chr1:10936695-10936831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
292-431
               

               
Cow position:
               
chr1:10068048-10067912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
293-422
               

               
Cow position:
               
chr1:23634764-23634636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
293-430
               

               
Cow position:
               
chr1:86574243-86574381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
293-431
               

               
Cow position:
               
chr1:95655518-95655380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
294-431
               

               
Cow position:
               
chr1:85163900-85163761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
295-405
               

               
Cow position:
               
chr1:6450155-6450047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
295-430
               

               
Cow position:
               
chr1:23371142-23371010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
296-441
               

               
Cow position:
               
chr1:72036023-72035879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 82
               

               
Conread position:
               
298-422
               

               
Cow position:
               
chr1:97205775-97205900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr1:4563865-4563738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr1:33040239-33040366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr1:33364432-33364559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr1:33656265-33656392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr1:58172317-58172440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr1:102010857-102010729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
298-425
               

               
Cow position:
               
chr1:59626066-59626193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
298-438
               

               
Cow position:
               
chr1:88297641-88297779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
299-405
               

               
Cow position:
               
chr1:12223570-12223464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
300-431
               

               
Cow position:
               
chr1:11728162-11728292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
303-417
               

               
Cow position:
               
chr1:25548460-25548575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
304-431
               

               
Cow position:
               
chr1:80974802-80974674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
305-432
               

               
Cow position:
               
chr1:40310187-40310315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
305-432
               

               
Cow position:
               
chr1:86511326-86511458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
306-424
               

               
Cow position:
               
chr1:40603458-40603577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
311-414
               

               
Cow position:
               
chr1:71797497-71797394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
317-431
               

               
Cow position:
               
chr1:19517998-19517881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
339-431
               

               
Cow position:
               
chr1:76020479-76020386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               
Show alignments to all cow chromosomes.