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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_011841.5.5
        

               
Conread position:
               
1-99
               

               
Cow position:
               
chr27:15925866-15925769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-116
               

               
Cow position:
               
chr27:12146590-12146476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr27:3866220-3866347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr27:30584112-30583973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr27:21342581-21342723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr27:3759924-3760086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr27:526045-525878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr27:4768488-4768657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr27:8726631-8726800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr27:19488057-19488226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr27:15544068-15544351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr27:9990144-9989843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr27:20001469-20001764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr27:18473306-18473603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr27:13308697-13309064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr27:15374872-15375250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr27:27045236-27045624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr27:1082109-1081711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr27:17568155-17568548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr27:30307215-30306794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 18
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr27:26552328-26551908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 19
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr27:5925326-5925747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr27:16427716-16428138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 17
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr27:344870-344439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 15
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr27:3990747-3990309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 17
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr27:8426910-8427338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr27:19523656-19523218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 199
               

               
Conread position:
               
1-422
               

               
Cow position:
               
chr27:8972497-8972936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:1520733-1521168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:2000898-2001339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr27:11480984-11481425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:165866-165425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:3653647-3653205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:5983977-5983535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:8959976-8959522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:10579000-10579438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:12006201-12006643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:13353359-13353801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:14297260-14297702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:15634289-15633848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:16031344-16030902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:19424324-19423883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:20810474-20810911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:22797604-22797164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 18
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:24296216-24295765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:26329986-26330427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:26784875-26785310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 15
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr27:29036316-29035887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr27:3994252-3993835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
273, 17
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr27:11434229-11434667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr27:15273015-15272573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 17
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr27:31249295-31249732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr27:1188719-1189164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr27:4331687-4331237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr27:13183210-13182788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr27:21284178-21283744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 20
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr27:25784700-25784262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr27:25801152-25800709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 17
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr27:27235053-27234648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr27:8290895-8291345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr27:27729435-27728989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr27:27930260-27930704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr27:31547488-31547033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 17
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr27:12277164-12277613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 17
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr27:17422644-17422805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chr27:16110083-16110449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr27:27278778-27279146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr27:4811292-4811669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
2-405
               

               
Cow position:
               
chr27:20764814-20765212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
146, 21
               

               
Conread position:
               
2-413
               

               
Cow position:
               
chr27:25799310-25799741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 16
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr27:6524225-6523778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr27:8592453-8592879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr27:22329551-22329993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 16
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr27:24260725-24260324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr27:8429057-8429434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr27:21451500-21451927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr27:30782960-30783396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 15
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr27:19932511-19932062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 15
               

               
Conread position:
               
3-616
               

               
Cow position:
               
chr27:14380376-14380994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr27:27556862-27557282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 14
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chr27:27666064-27666227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
5-407
               

               
Cow position:
               
chr27:23200797-23200395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
179, 30
               

               
Conread position:
               
6-431
               

               
Cow position:
               
chr27:15872263-15871830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 238
               

               
Conread position:
               
7-339
               

               
Cow position:
               
chr27:25971542-25971191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
8-168
               

               
Cow position:
               
chr27:27193305-27193145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chr27:28051723-28051429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
8-378
               

               
Cow position:
               
chr27:23317882-23317504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
165, 93
               

               
Conread position:
               
8-416
               

               
Cow position:
               
chr27:31268278-31268696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
8-425
               

               
Cow position:
               
chr27:27291447-27291889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr27:1536237-1536672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 36
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr27:11489701-11490123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr27:18954109-18954544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
167, 32
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chr27:12262445-12262017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
127, 10
               

               
Conread position:
               
10-430
               

               
Cow position:
               
chr27:12281758-12282188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 390
               

               
Conread position:
               
11-171
               

               
Cow position:
               
chr27:27849332-27849492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
11-409
               

               
Cow position:
               
chr27:4804849-4805270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
11-423
               

               
Cow position:
               
chr27:5990983-5990556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
12-414
               

               
Cow position:
               
chr27:4828562-4828980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 207
               

               
Conread position:
               
13-431
               

               
Cow position:
               
chr27:15405704-15406124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 45
               

               
Conread position:
               
16-339
               

               
Cow position:
               
chr27:28895076-28895410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
155, 64
               

               
Conread position:
               
16-424
               

               
Cow position:
               
chr27:9332745-9333162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 132
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr27:12750093-12750334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
17-276
               

               
Cow position:
               
chr27:21204140-21203868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
145, 240
               

               
Conread position:
               
17-402
               

               
Cow position:
               
chr27:15348730-15349118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 230
               

               
Conread position:
               
17-409
               

               
Cow position:
               
chr27:4982440-4982852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr27:3232466-3232043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 404
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr27:8201006-8201430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
17-429
               

               
Cow position:
               
chr27:25964890-25964464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
178, 63
               

               
Conread position:
               
17-430
               

               
Cow position:
               
chr27:4665533-4665147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
17-431
               

               
Cow position:
               
chr27:26856126-26856542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
17-437
               

               
Cow position:
               
chr27:5914002-5914437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 11
               

               
Conread position:
               
18-431
               

               
Cow position:
               
chr27:2557922-2557492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 241
               

               
Conread position:
               
20-421
               

               
Cow position:
               
chr27:14669268-14669681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 202
               

               
Conread position:
               
23-171
               

               
Cow position:
               
chr27:20716724-20716577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
23-430
               

               
Cow position:
               
chr27:27501284-27501688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
157, 78
               

               
Conread position:
               
24-422
               

               
Cow position:
               
chr27:17565559-17565151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 260
               

               
Conread position:
               
26-401
               

               
Cow position:
               
chr27:26654360-26653989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
28-424
               

               
Cow position:
               
chr27:15033812-15033396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
28-424
               

               
Cow position:
               
chr27:29811405-29811799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
29-300
               

               
Cow position:
               
chr27:24562581-24562317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
29-431
               

               
Cow position:
               
chr27:5268450-5268851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr27:28042634-28042498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
40-430
               

               
Cow position:
               
chr27:9263185-9262777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 22
               

               
Conread position:
               
41-303
               

               
Cow position:
               
chr27:25884923-25885195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
42-364
               

               
Cow position:
               
chr27:15697443-15697777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 169
               

               
Conread position:
               
42-430
               

               
Cow position:
               
chr27:29467025-29467429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
43-417
               

               
Cow position:
               
chr27:25792437-25792061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
131, 84
               

               
Conread position:
               
49-322
               

               
Cow position:
               
chr27:16627459-16627745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
49-431
               

               
Cow position:
               
chr27:1501625-1502012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
51-431
               

               
Cow position:
               
chr27:11256563-11256185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 108
               

               
Conread position:
               
54-409
               

               
Cow position:
               
chr27:24240007-24239650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
59-409
               

               
Cow position:
               
chr27:21392122-21392489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 158
               

               
Conread position:
               
62-421
               

               
Cow position:
               
chr27:15870898-15870528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
64-431
               

               
Cow position:
               
chr27:13316678-13317057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 288
               

               
Conread position:
               
78-418
               

               
Cow position:
               
chr27:16788162-16787810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 40
               

               
Conread position:
               
85-424
               

               
Cow position:
               
chr27:10383584-10383926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
86-393
               

               
Cow position:
               
chr27:22647495-22647169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr27:28924058-28924374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr27:13901261-13901619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 353
               

               
Conread position:
               
91-430
               

               
Cow position:
               
chr27:10670200-10670537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
94-420
               

               
Cow position:
               
chr27:2331648-2331994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
94-424
               

               
Cow position:
               
chr27:9970316-9970666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
101-441
               

               
Cow position:
               
chr27:2681675-2682029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 332
               

               
Conread position:
               
112-414
               

               
Cow position:
               
chr27:15867132-15866819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
127-405
               

               
Cow position:
               
chr27:30583702-30583423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
159-431
               

               
Cow position:
               
chr27:2849196-2848933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
161-428
               

               
Cow position:
               
chr27:8586709-8586982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
164-395
               

               
Cow position:
               
chr27:30677851-30677621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
164-409
               

               
Cow position:
               
chr27:30036097-30036350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
164-422
               

               
Cow position:
               
chr27:4389231-4389483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
164-424
               

               
Cow position:
               
chr27:10306346-10306602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
100, 176
               

               
Conread position:
               
164-431
               

               
Cow position:
               
chr27:21350076-21350349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
165-350
               

               
Cow position:
               
chr27:526162-526355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
165-414
               

               
Cow position:
               
chr27:25112391-25112640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr27:3649710-3649976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
165-427
               

               
Cow position:
               
chr27:17476978-17476717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 217
               

               
Conread position:
               
166-424
               

               
Cow position:
               
chr27:16332248-16331984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
167-431
               

               
Cow position:
               
chr27:24054937-24055184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
168-405
               

               
Cow position:
               
chr27:27193115-27192870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
174-378
               

               
Cow position:
               
chr27:24205896-24205686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
174-425
               

               
Cow position:
               
chr27:15099880-15100137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 175
               

               
Conread position:
               
174-431
               

               
Cow position:
               
chr27:9089883-9090144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
174-431
               

               
Cow position:
               
chr27:12239306-12239569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
174-431
               

               
Cow position:
               
chr27:19388954-19388688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
175-281
               

               
Cow position:
               
chr27:667985-667878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
178-288
               

               
Cow position:
               
chr27:556227-556116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
180-370
               

               
Cow position:
               
chr27:13695351-13695545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
184-409
               

               
Cow position:
               
chr27:1124383-1124150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
18, 204
               

               
Conread position:
               
188-431
               

               
Cow position:
               
chr27:27054243-27053989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
208-393
               

               
Cow position:
               
chr27:491357-491546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr27:791773-791551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr27:14859598-14859818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 151
               

               
Conread position:
               
212-424
               

               
Cow position:
               
chr27:28984044-28984260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
212-431
               

               
Cow position:
               
chr27:816484-816261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
216-431
               

               
Cow position:
               
chr27:13409273-13409497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
217-391
               

               
Cow position:
               
chr27:26599189-26599008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr27:4834428-4834635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
219-431
               

               
Cow position:
               
chr27:5423501-5423717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 149
               

               
Conread position:
               
220-431
               

               
Cow position:
               
chr27:2936107-2936326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
13, 125
               

               
Conread position:
               
223-424
               

               
Cow position:
               
chr27:19300278-19300071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
227-423
               

               
Cow position:
               
chr27:7819182-7818987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
227-431
               

               
Cow position:
               
chr27:18559642-18559433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chr27:16934990-16934795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
237-431
               

               
Cow position:
               
chr27:8262140-8262341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
241-423
               

               
Cow position:
               
chr27:10324620-10324436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
242-424
               

               
Cow position:
               
chr27:13422857-13422669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
249-431
               

               
Cow position:
               
chr27:28907918-28907731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
8, 155
               

               
Conread position:
               
258-469
               

               
Cow position:
               
chr27:27742539-27742752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
261-424
               

               
Cow position:
               
chr27:723681-723850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
262-424
               

               
Cow position:
               
chr27:12750863-12751026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 118
               

               
Conread position:
               
275-409
               

               
Cow position:
               
chr27:13272907-13273045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
281-423
               

               
Cow position:
               
chr27:16045081-16045223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 12
               

               
Conread position:
               
293-431
               

               
Cow position:
               
chr27:23454343-23454477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
298-424
               

               
Cow position:
               
chr27:9989511-9989384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
298-432
               

               
Cow position:
               
chr27:13844345-13844210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
316-431
               

               
Cow position:
               
chr27:12190660-12190776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
317-431
               

               
Cow position:
               
chr27:27017205-27017319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 103
               
Show alignments to all cow chromosomes.