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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_013818.5
        

               
Conread position:
               
9-434
               

               
Cow position:
               
chr17:20884822-20884397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
11-278
               

               
Cow position:
               
chr17:13414067-13414337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 20
               

               
Conread position:
               
16-277
               

               
Cow position:
               
chr17:10414785-10414530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
17-508
               

               
Cow position:
               
chr17:34078818-34079304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
17-517
               

               
Cow position:
               
chr17:33271380-33271897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
19-354
               

               
Cow position:
               
chr17:23280564-23280904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
21-510
               

               
Cow position:
               
chr17:40772115-40771622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
30-510
               

               
Cow position:
               
chr17:32027167-32027670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
34-294
               

               
Cow position:
               
chr17:42150664-42150406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
36-510
               

               
Cow position:
               
chr17:24786756-24787229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 33
               

               
Conread position:
               
37-223
               

               
Cow position:
               
chr17:14668781-14668588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
37-497
               

               
Cow position:
               
chr17:13922755-13922280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
38-340
               

               
Cow position:
               
chr17:35149258-35149561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
44-234
               

               
Cow position:
               
chr17:21363645-21363456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
44-522
               

               
Cow position:
               
chr17:17222613-17222121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 259
               

               
Conread position:
               
49-330
               

               
Cow position:
               
chr17:28982439-28982159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
51-266
               

               
Cow position:
               
chr17:39964139-39963920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
54-460
               

               
Cow position:
               
chr17:28468378-28467978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
54-508
               

               
Cow position:
               
chr17:9854236-9853780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 177
               

               
Conread position:
               
54-521
               

               
Cow position:
               
chr17:21972873-21973353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 336
               

               
Conread position:
               
54-540
               

               
Cow position:
               
chr17:11839977-11839460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
55-212
               

               
Cow position:
               
chr17:24116868-24116706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
55-215
               

               
Cow position:
               
chr17:18673783-18673946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
55-226
               

               
Cow position:
               
chr17:6787193-6787019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
55-272
               

               
Cow position:
               
chr17:41616995-41616772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 8
               

               
Conread position:
               
55-297
               

               
Cow position:
               
chr17:17035200-17034961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 14
               

               
Conread position:
               
55-298
               

               
Cow position:
               
chr17:27440431-27440187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
55-364
               

               
Cow position:
               
chr17:9770755-9770454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
55-380
               

               
Cow position:
               
chr17:36814622-36814287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
55-452
               

               
Cow position:
               
chr17:12946104-12946513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
55-464
               

               
Cow position:
               
chr17:27058298-27058715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chr17:4601308-4601752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chr17:32989724-32989287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chr17:32993376-32993819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chr17:15684755-15684297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chr17:20157859-20157409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chr17:27274818-27274354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
55-513
               

               
Cow position:
               
chr17:30713597-30713142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
55-540
               

               
Cow position:
               
chr17:10528474-10528982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
56-281
               

               
Cow position:
               
chr17:27292203-27292429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
56-500
               

               
Cow position:
               
chr17:29714963-29715384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
57-434
               

               
Cow position:
               
chr17:32349310-32348948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
58-272
               

               
Cow position:
               
chr17:21718747-21718960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 102
               

               
Conread position:
               
58-298
               

               
Cow position:
               
chr17:40276986-40276751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
58-314
               

               
Cow position:
               
chr17:21466005-21466268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 251
               

               
Conread position:
               
58-321
               

               
Cow position:
               
chr17:35193567-35193834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 217
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr17:29995183-29995453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
58-354
               

               
Cow position:
               
chr17:18934504-18934210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
58-410
               

               
Cow position:
               
chr17:21325596-21325231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
17, 266
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chr17:40673623-40673255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 241
               

               
Conread position:
               
58-492
               

               
Cow position:
               
chr17:12536225-12536658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
59-381
               

               
Cow position:
               
chr17:1469614-1469303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
241, 12
               

               
Conread position:
               
59-466
               

               
Cow position:
               
chr17:4105743-4106150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
59-466
               

               
Cow position:
               
chr17:4121478-4121886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
60-367
               

               
Cow position:
               
chr17:26807145-26806836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
60-417
               

               
Cow position:
               
chr17:8597861-8598210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
88, 70
               

               
Conread position:
               
61-326
               

               
Cow position:
               
chr17:5012821-5013093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
62, 223
               

               
Conread position:
               
63-249
               

               
Cow position:
               
chr17:7711681-7711497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
63-330
               

               
Cow position:
               
chr17:12959347-12959085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
63-376
               

               
Cow position:
               
chr17:26448788-26448473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
63-377
               

               
Cow position:
               
chr17:36864869-36864561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
63-426
               

               
Cow position:
               
chr17:31856917-31856545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
63-452
               

               
Cow position:
               
chr17:31037132-31037528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
63-474
               

               
Cow position:
               
chr17:1634247-1634654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
63-484
               

               
Cow position:
               
chr17:3577772-3577356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
227, 60
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chr17:6936433-6936872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 150
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chr17:20992793-20993247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 192
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chr17:40741899-40741439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
63-538
               

               
Cow position:
               
chr17:29355999-29356452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
64-486
               

               
Cow position:
               
chr17:14033398-14033828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
65-413
               

               
Cow position:
               
chr17:40852210-40851878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
68-510
               

               
Cow position:
               
chr17:10447153-10446708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
55, 218
               

               
Conread position:
               
69-510
               

               
Cow position:
               
chr17:21114716-21115156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
69-521
               

               
Cow position:
               
chr17:43717101-43717528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
70-278
               

               
Cow position:
               
chr17:21236763-21236557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
70-320
               

               
Cow position:
               
chr17:17044096-17044343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
70-332
               

               
Cow position:
               
chr17:5421919-5421653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
70-365
               

               
Cow position:
               
chr17:5288402-5288111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
70-439
               

               
Cow position:
               
chr17:18146428-18146052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 245
               

               
Conread position:
               
70-496
               

               
Cow position:
               
chr17:11277789-11278226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
70-508
               

               
Cow position:
               
chr17:11618825-11618374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 173
               

               
Conread position:
               
70-510
               

               
Cow position:
               
chr17:2810871-2810413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
70-510
               

               
Cow position:
               
chr17:15664914-15664461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
70-510
               

               
Cow position:
               
chr17:18490771-18490325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 88
               

               
Conread position:
               
70-522
               

               
Cow position:
               
chr17:25875633-25875190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
71-377
               

               
Cow position:
               
chr17:21806211-21806519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
13, 227
               

               
Conread position:
               
71-510
               

               
Cow position:
               
chr17:33288421-33288862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
72-508
               

               
Cow position:
               
chr17:7810511-7810945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 235
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chr17:8663742-8663586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chr17:9260376-9260530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chr17:20359352-20359194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
73-234
               

               
Cow position:
               
chr17:17265895-17266060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
73-250
               

               
Cow position:
               
chr17:9077978-9078162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 168
               

               
Conread position:
               
73-250
               

               
Cow position:
               
chr17:31754537-31754716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
73-265
               

               
Cow position:
               
chr17:26225263-26225071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
73-278
               

               
Cow position:
               
chr17:20929479-20929272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
73-299
               

               
Cow position:
               
chr17:40355496-40355268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr17:32332857-32333106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr17:25473046-25473300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
73-331
               

               
Cow position:
               
chr17:22189666-22189418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
73-339
               

               
Cow position:
               
chr17:9932076-9932331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
73-354
               

               
Cow position:
               
chr17:22051356-22051639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
73-354
               

               
Cow position:
               
chr17:39606657-39606383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
73-372
               

               
Cow position:
               
chr17:1025599-1025885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 50
               

               
Conread position:
               
73-372
               

               
Cow position:
               
chr17:3153333-3153636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
73-375
               

               
Cow position:
               
chr17:34790830-34791134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
73-377
               

               
Cow position:
               
chr17:9824902-9824599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
73-408
               

               
Cow position:
               
chr17:35573982-35573663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
73-410
               

               
Cow position:
               
chr17:25616480-25616157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
73-413
               

               
Cow position:
               
chr17:1040963-1040641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
254, 50
               

               
Conread position:
               
73-464
               

               
Cow position:
               
chr17:1562556-1562936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
73-468
               

               
Cow position:
               
chr17:30728742-30728362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
73-486
               

               
Cow position:
               
chr17:8836716-8837133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
73-486
               

               
Cow position:
               
chr17:36791360-36790955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
73-497
               

               
Cow position:
               
chr17:24824481-24824057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
73-505
               

               
Cow position:
               
chr17:26818237-26818655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
73-505
               

               
Cow position:
               
chr17:33793387-33792979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 30
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr17:13243819-13244232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
378, 18
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr17:24587858-24587412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 66
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr17:24883335-24883770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr17:27429791-27429372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 67
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr17:34948872-34948434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 164
               

               
Conread position:
               
73-509
               

               
Cow position:
               
chr17:11296874-11296428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:6423989-6423553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:14025672-14026123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 408
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:18201996-18201566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 274
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:21003596-21004039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:21738630-21739092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr17:25128119-25128557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
73-513
               

               
Cow position:
               
chr17:3389069-3388650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 166
               

               
Conread position:
               
73-518
               

               
Cow position:
               
chr17:44923964-44924391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chr17:17059653-17059218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 40
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chr17:22775605-22775167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chr17:25901443-25900977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 323
               

               
Conread position:
               
73-524
               

               
Cow position:
               
chr17:32418882-32419343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
74-332
               

               
Cow position:
               
chr17:24163268-24163015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
226, 44
               

               
Conread position:
               
75-501
               

               
Cow position:
               
chr17:32138183-32138599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
76-440
               

               
Cow position:
               
chr17:6318636-6318988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
76-464
               

               
Cow position:
               
chr17:7143089-7142702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
76-500
               

               
Cow position:
               
chr17:22564410-22563985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 39
               

               
Conread position:
               
76-508
               

               
Cow position:
               
chr17:24004605-24004188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
76-510
               

               
Cow position:
               
chr17:24974175-24973742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
76-521
               

               
Cow position:
               
chr17:7132192-7132677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 104
               

               
Conread position:
               
77-354
               

               
Cow position:
               
chr17:5012072-5011802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
46, 161
               

               
Conread position:
               
77-432
               

               
Cow position:
               
chr17:25917118-25916772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
77-496
               

               
Cow position:
               
chr17:12929297-12929738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
77-540
               

               
Cow position:
               
chr17:27795886-27795407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
80-508
               

               
Cow position:
               
chr17:23100994-23101417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 44
               

               
Conread position:
               
81-275
               

               
Cow position:
               
chr17:43957888-43957694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
81-509
               

               
Cow position:
               
chr17:20801041-20800609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
82-226
               

               
Cow position:
               
chr17:10221981-10222127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
83-210
               

               
Cow position:
               
chr17:30156195-30156322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
83-218
               

               
Cow position:
               
chr17:10037635-10037498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-222
               

               
Cow position:
               
chr17:15334268-15334409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
83-224
               

               
Cow position:
               
chr17:1081433-1081289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr17:21910306-21910448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr17:36467963-36468107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr17:3387944-3387799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr17:15883900-15883753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr17:25702829-25702683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr17:26183572-26183426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr17:41009497-41009354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr17:42780094-42780242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chr17:11920937-11921089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chr17:28529080-28528929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
83-234
               

               
Cow position:
               
chr17:6767032-6767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
83-234
               

               
Cow position:
               
chr17:18708392-18708536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr17:13976484-13976652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr17:28795755-28795924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr17:21181679-21181507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-262
               

               
Cow position:
               
chr17:5027239-5027413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
83-266
               

               
Cow position:
               
chr17:5344844-5344660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-267
               

               
Cow position:
               
chr17:24895302-24895115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
83-296
               

               
Cow position:
               
chr17:24862680-24862471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
83-296
               

               
Cow position:
               
chr17:32143314-32143102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 174
               

               
Conread position:
               
83-298
               

               
Cow position:
               
chr17:8986376-8986595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-299
               

               
Cow position:
               
chr17:4817755-4817533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
83-299
               

               
Cow position:
               
chr17:30169012-30169226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 29
               

               
Conread position:
               
83-304
               

               
Cow position:
               
chr17:29245659-29245450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-308
               

               
Cow position:
               
chr17:20904882-20905097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
169, 40
               

               
Conread position:
               
83-330
               

               
Cow position:
               
chr17:25584469-25584219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
83-331
               

               
Cow position:
               
chr17:21015212-21014958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
83-345
               

               
Cow position:
               
chr17:18818787-18818530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr17:21039781-21039517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
83-366
               

               
Cow position:
               
chr17:5372307-5372588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
83-370
               

               
Cow position:
               
chr17:25709940-25709641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-381
               

               
Cow position:
               
chr17:22128148-22127853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
83-383
               

               
Cow position:
               
chr17:11994795-11995107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 238
               

               
Conread position:
               
83-385
               

               
Cow position:
               
chr17:7571331-7571024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 164
               

               
Conread position:
               
83-386
               

               
Cow position:
               
chr17:30750273-30749951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
83-396
               

               
Cow position:
               
chr17:25342515-25342828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
83-405
               

               
Cow position:
               
chr17:26789640-26789326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chr17:7693295-7692962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 158
               

               
Conread position:
               
83-412
               

               
Cow position:
               
chr17:15303748-15304091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 188
               

               
Conread position:
               
83-413
               

               
Cow position:
               
chr17:34860598-34860277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
83-415
               

               
Cow position:
               
chr17:25513893-25514229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 208
               

               
Conread position:
               
83-423
               

               
Cow position:
               
chr17:4786256-4786609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 227
               

               
Conread position:
               
83-432
               

               
Cow position:
               
chr17:7802947-7803295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 230
               

               
Conread position:
               
83-433
               

               
Cow position:
               
chr17:26631582-26631937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 177
               

               
Conread position:
               
83-433
               

               
Cow position:
               
chr17:44146748-44147097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
83-434
               

               
Cow position:
               
chr17:27183717-27184066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
83-442
               

               
Cow position:
               
chr17:9965797-9966162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 223
               

               
Conread position:
               
83-452
               

               
Cow position:
               
chr17:24559518-24559151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 224
               

               
Conread position:
               
83-452
               

               
Cow position:
               
chr17:25118112-25117742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
40, 211
               

               
Conread position:
               
83-469
               

               
Cow position:
               
chr17:12306175-12306563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
83-473
               

               
Cow position:
               
chr17:20932554-20932158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
83-474
               

               
Cow position:
               
chr17:18419910-18419501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 174
               

               
Conread position:
               
83-488
               

               
Cow position:
               
chr17:1063393-1063003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
83-489
               

               
Cow position:
               
chr17:10458709-10459122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
83-490
               

               
Cow position:
               
chr17:908964-908558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
83-490
               

               
Cow position:
               
chr17:25612312-25611905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
83-493
               

               
Cow position:
               
chr17:40332004-40331574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 175
               

               
Conread position:
               
83-495
               

               
Cow position:
               
chr17:24773901-24773490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
83-496
               

               
Cow position:
               
chr17:17410525-17410104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 386
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chr17:5514982-5514564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chr17:20071878-20072270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 16
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chr17:26000344-25999921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
83-501
               

               
Cow position:
               
chr17:30529322-30529735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
83-504
               

               
Cow position:
               
chr17:21959458-21959881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 213
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:1035369-1035810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 214
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:12325545-12325952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
352, 43
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:15102664-15103094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 216
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:16446201-16446635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:20022289-20022723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:21599455-21599888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:26231190-26230734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr17:32471563-32472000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
216, 43
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:5280425-5280850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
39, 166
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:7437396-7436958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:18720227-18720656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 61
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:20092904-20093332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
197, 39
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:20848749-20848323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:29080762-29080358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:36330742-36331174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 44
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr17:39771627-39771188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 214
               

               
Conread position:
               
83-517
               

               
Cow position:
               
chr17:32553825-32554241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:1783401-1783828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:5898299-5898746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 226
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:11397892-11397448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:11664352-11664810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 289
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:13940093-13940542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 221
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:17180270-17179818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 201
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr17:31480805-31481264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
83-522
               

               
Cow position:
               
chr17:20780750-20780289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
83-537
               

               
Cow position:
               
chr17:11101593-11102030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
83-538
               

               
Cow position:
               
chr17:36265021-36265473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chr17:25815820-25815367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
84-219
               

               
Cow position:
               
chr17:7865049-7864914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
84-250
               

               
Cow position:
               
chr17:19471549-19471712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr17:26072534-26072748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-298
               

               
Cow position:
               
chr17:1463104-1463319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
39, 195
               

               
Conread position:
               
84-316
               

               
Cow position:
               
chr17:9509770-9510003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
84-325
               

               
Cow position:
               
chr17:25511466-25511227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
84-381
               

               
Cow position:
               
chr17:5349899-5350192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
84-381
               

               
Cow position:
               
chr17:29026299-29025993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
39, 220
               

               
Conread position:
               
84-397
               

               
Cow position:
               
chr17:10431740-10432065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
84-404
               

               
Cow position:
               
chr17:21744160-21743842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
84-421
               

               
Cow position:
               
chr17:11215009-11215342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
84-427
               

               
Cow position:
               
chr17:25594464-25594822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
84-440
               

               
Cow position:
               
chr17:32280892-32280538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
84-452
               

               
Cow position:
               
chr17:3467975-3467621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
84-471
               

               
Cow position:
               
chr17:22032464-22032863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
84-509
               

               
Cow position:
               
chr17:33053078-33052656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chr17:11362400-11361975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chr17:32278680-32279115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
84-538
               

               
Cow position:
               
chr17:20090405-20090858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
39, 224
               

               
Conread position:
               
84-539
               

               
Cow position:
               
chr17:36275560-36275115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
85-233
               

               
Cow position:
               
chr17:25095709-25095557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
85-266
               

               
Cow position:
               
chr17:5038832-5039004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 49
               

               
Conread position:
               
85-310
               

               
Cow position:
               
chr17:21863882-21863656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
85-327
               

               
Cow position:
               
chr17:31559794-31559555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
85-350
               

               
Cow position:
               
chr17:25800661-25800925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
157, 41
               

               
Conread position:
               
85-407
               

               
Cow position:
               
chr17:11912282-11912596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
85-440
               

               
Cow position:
               
chr17:1114121-1113754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
37, 225
               

               
Conread position:
               
85-458
               

               
Cow position:
               
chr17:31701658-31701281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 202
               

               
Conread position:
               
85-488
               

               
Cow position:
               
chr17:36454555-36454950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 153
               

               
Conread position:
               
85-501
               

               
Cow position:
               
chr17:11215670-11216082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
85-508
               

               
Cow position:
               
chr17:12289187-12289621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr17:5422855-5423279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 35
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr17:5731141-5730716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr17:29472680-29472267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
85-540
               

               
Cow position:
               
chr17:11280866-11281344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 242
               

               
Conread position:
               
85-540
               

               
Cow position:
               
chr17:38615186-38614715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 231
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr17:24928700-24928338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
36, 204
               

               
Conread position:
               
86-499
               

               
Cow position:
               
chr17:33933527-33933932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
87-300
               

               
Cow position:
               
chr17:25467206-25466993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
87-372
               

               
Cow position:
               
chr17:40639168-40638885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr17:37699120-37699472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
87-496
               

               
Cow position:
               
chr17:1256277-1256698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
87-508
               

               
Cow position:
               
chr17:11381504-11381926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
87-538
               

               
Cow position:
               
chr17:23063943-23063474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 142
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr17:1466195-1466503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
88-433
               

               
Cow position:
               
chr17:26233607-26233951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
34, 215
               

               
Conread position:
               
88-468
               

               
Cow position:
               
chr17:17682694-17683064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
88-510
               

               
Cow position:
               
chr17:6156253-6155833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
88-510
               

               
Cow position:
               
chr17:20032688-20033124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
88-510
               

               
Cow position:
               
chr17:24752101-24752502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
88-513
               

               
Cow position:
               
chr17:6566704-6566261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
88-540
               

               
Cow position:
               
chr17:11036133-11035680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
89-491
               

               
Cow position:
               
chr17:12109027-12108615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 149
               

               
Conread position:
               
89-510
               

               
Cow position:
               
chr17:16371477-16371044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 217
               

               
Conread position:
               
91-381
               

               
Cow position:
               
chr17:27730763-27730466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 227
               

               
Conread position:
               
91-440
               

               
Cow position:
               
chr17:6329329-6328981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
91-486
               

               
Cow position:
               
chr17:3202194-3202585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
32, 159
               

               
Conread position:
               
91-501
               

               
Cow position:
               
chr17:21434511-21434928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
91-508
               

               
Cow position:
               
chr17:18473380-18472973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
91-539
               

               
Cow position:
               
chr17:19999334-19998897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
93-225
               

               
Cow position:
               
chr17:5048148-5048014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
93-510
               

               
Cow position:
               
chr17:25189505-25189072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
96-510
               

               
Cow position:
               
chr17:4611847-4612285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
99-330
               

               
Cow position:
               
chr17:10023267-10023034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 215
               

               
Conread position:
               
99-440
               

               
Cow position:
               
chr17:21414618-21414966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
52, 214
               

               
Conread position:
               
99-440
               

               
Cow position:
               
chr17:21437101-21437449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 203
               

               
Conread position:
               
100-477
               

               
Cow position:
               
chr17:24149395-24149002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 214
               

               
Conread position:
               
100-498
               

               
Cow position:
               
chr17:42419918-42419535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
100-508
               

               
Cow position:
               
chr17:21870514-21870944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
23, 209
               

               
Conread position:
               
100-510
               

               
Cow position:
               
chr17:5768107-5767706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
100-540
               

               
Cow position:
               
chr17:14049997-14050433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
103-521
               

               
Cow position:
               
chr17:9697475-9697923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
106-484
               

               
Cow position:
               
chr17:36203281-36203672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
106-526
               

               
Cow position:
               
chr17:30665474-30665047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
110-409
               

               
Cow position:
               
chr17:14652578-14652881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 204
               

               
Conread position:
               
113-510
               

               
Cow position:
               
chr17:7698249-7697848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
118-508
               

               
Cow position:
               
chr17:25097641-25097257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 22
               

               
Conread position:
               
120-510
               

               
Cow position:
               
chr17:21292859-21293253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
120-514
               

               
Cow position:
               
chr17:4213937-4213543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr17:10803063-10802924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
121-312
               

               
Cow position:
               
chr17:25930352-25930541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
121-327
               

               
Cow position:
               
chr17:9940888-9940666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
121-400
               

               
Cow position:
               
chr17:21489440-21489716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
121-422
               

               
Cow position:
               
chr17:35338729-35339029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
44, 170
               

               
Conread position:
               
121-437
               

               
Cow position:
               
chr17:45079744-45079439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
121-497
               

               
Cow position:
               
chr17:18495334-18495705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 28
               

               
Conread position:
               
121-497
               

               
Cow position:
               
chr17:24490729-24490327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
159, 399
               

               
Conread position:
               
121-510
               

               
Cow position:
               
chr17:1492961-1493364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 115
               

               
Conread position:
               
121-519
               

               
Cow position:
               
chr17:18108901-18109305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
123-433
               

               
Cow position:
               
chr17:45882087-45881779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
124-433
               

               
Cow position:
               
chr17:33410825-33411147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
125-396
               

               
Cow position:
               
chr17:15376774-15376521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
125-509
               

               
Cow position:
               
chr17:21335508-21335905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
126-510
               

               
Cow position:
               
chr17:19891806-19891407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr17:12219761-12220144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
200, 21
               

               
Conread position:
               
131-409
               

               
Cow position:
               
chr17:12880772-12880495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
197, 73
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr17:34751229-34751509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
132-281
               

               
Cow position:
               
chr17:37430330-37430477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
132-402
               

               
Cow position:
               
chr17:21922460-21922718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
260, 18
               

               
Conread position:
               
132-403
               

               
Cow position:
               
chr17:27202871-27203139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
132-432
               

               
Cow position:
               
chr17:7137164-7136858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 197
               

               
Conread position:
               
132-450
               

               
Cow position:
               
chr17:20874572-20874249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 25
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr17:15340575-15340935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
123, 161
               

               
Conread position:
               
132-509
               

               
Cow position:
               
chr17:24554170-24553797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
303, 23
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chr17:8079489-8079109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 151
               

               
Conread position:
               
132-513
               

               
Cow position:
               
chr17:9117821-9117432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 102
               

               
Conread position:
               
132-517
               

               
Cow position:
               
chr17:15299703-15300088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
132-537
               

               
Cow position:
               
chr17:8544476-8544073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
133-475
               

               
Cow position:
               
chr17:32273511-32273857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 179
               

               
Conread position:
               
133-493
               

               
Cow position:
               
chr17:9746685-9746327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 10
               

               
Conread position:
               
133-508
               

               
Cow position:
               
chr17:23246372-23246006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
166, 17
               

               
Conread position:
               
133-510
               

               
Cow position:
               
chr17:20083347-20083720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 27
               

               
Conread position:
               
135-473
               

               
Cow position:
               
chr17:24822035-24821695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
141, 109
               

               
Conread position:
               
135-510
               

               
Cow position:
               
chr17:5250404-5250764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
135-521
               

               
Cow position:
               
chr17:21755260-21755659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
137-354
               

               
Cow position:
               
chr17:22016917-22017134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr17:1410065-1410447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
138-377
               

               
Cow position:
               
chr17:22056857-22057092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
138-521
               

               
Cow position:
               
chr17:1060874-1061284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 262
               

               
Conread position:
               
139-327
               

               
Cow position:
               
chr17:34836342-34836153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
140-260
               

               
Cow position:
               
chr17:42346850-42346970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-275
               

               
Cow position:
               
chr17:25193358-25193493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-345
               

               
Cow position:
               
chr17:29961826-29961616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
140-390
               

               
Cow position:
               
chr17:2275639-2275392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
190, 155
               

               
Conread position:
               
140-485
               

               
Cow position:
               
chr17:20126764-20126431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
189, 17
               

               
Conread position:
               
140-508
               

               
Cow position:
               
chr17:24077570-24077198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 87
               

               
Conread position:
               
141-323
               

               
Cow position:
               
chr17:3067691-3067869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
141-482
               

               
Cow position:
               
chr17:29157584-29157238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 106
               

               
Conread position:
               
141-497
               

               
Cow position:
               
chr17:37481904-37482274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
141-508
               

               
Cow position:
               
chr17:35126873-35126508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chr17:38200595-38200974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
119, 106
               

               
Conread position:
               
141-538
               

               
Cow position:
               
chr17:40288833-40289240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 20
               

               
Conread position:
               
142-362
               

               
Cow position:
               
chr17:25126518-25126297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
35, 162
               

               
Conread position:
               
142-493
               

               
Cow position:
               
chr17:37479835-37480184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 94
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr17:17406301-17405930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chr17:37163364-37163735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
13, 159
               

               
Conread position:
               
145-510
               

               
Cow position:
               
chr17:14003989-14003621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 247
               

               
Conread position:
               
146-521
               

               
Cow position:
               
chr17:34596101-34595722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
183, 39
               

               
Conread position:
               
147-493
               

               
Cow position:
               
chr17:27048317-27047972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 75
               

               
Conread position:
               
147-497
               

               
Cow position:
               
chr17:41891899-41892263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr17:30718256-30718625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
147-510
               

               
Cow position:
               
chr17:25796175-25796548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
103, 122
               

               
Conread position:
               
148-497
               

               
Cow position:
               
chr17:43141548-43141911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 205
               

               
Conread position:
               
149-473
               

               
Cow position:
               
chr17:5398283-5398606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
149-510
               

               
Cow position:
               
chr17:24580135-24580507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
159, 59
               

               
Conread position:
               
149-510
               

               
Cow position:
               
chr17:41030097-41029744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
182, 22
               

               
Conread position:
               
150-475
               

               
Cow position:
               
chr17:20990031-20990367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
150-540
               

               
Cow position:
               
chr17:26765182-26764776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
100, 132
               

               
Conread position:
               
151-428
               

               
Cow position:
               
chr17:33657911-33658190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
147, 41
               

               
Conread position:
               
151-441
               

               
Cow position:
               
chr17:39857543-39857260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
151-473
               

               
Cow position:
               
chr17:5900527-5900207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
151-497
               

               
Cow position:
               
chr17:33275592-33275941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
151-498
               

               
Cow position:
               
chr17:21495529-21495179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
151-501
               

               
Cow position:
               
chr17:25032324-25032671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 83
               

               
Conread position:
               
151-510
               

               
Cow position:
               
chr17:38833201-38832834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 155
               

               
Conread position:
               
151-516
               

               
Cow position:
               
chr17:21243632-21244000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
151-521
               

               
Cow position:
               
chr17:22806385-22806756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
179, 114
               

               
Conread position:
               
151-537
               

               
Cow position:
               
chr17:21680937-21680532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
93, 194
               

               
Conread position:
               
152-387
               

               
Cow position:
               
chr17:39715312-39715079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
152-390
               

               
Cow position:
               
chr17:23883112-23883338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
152-418
               

               
Cow position:
               
chr17:11831958-11832229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
152-423
               

               
Cow position:
               
chr17:25502267-25501995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
142, 77
               

               
Conread position:
               
152-433
               

               
Cow position:
               
chr17:36500959-36500680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
152-497
               

               
Cow position:
               
chr17:9911914-9911568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 88
               

               
Conread position:
               
152-499
               

               
Cow position:
               
chr17:32366450-32366088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
152-522
               

               
Cow position:
               
chr17:17060526-17060901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
147, 34
               

               
Conread position:
               
153-330
               

               
Cow position:
               
chr17:28814337-28814519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
153-413
               

               
Cow position:
               
chr17:21757985-21758251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
174, 145
               

               
Conread position:
               
153-510
               

               
Cow position:
               
chr17:8690296-8690648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 66
               

               
Conread position:
               
153-510
               

               
Cow position:
               
chr17:14848392-14848731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
154-372
               

               
Cow position:
               
chr17:4683502-4683282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
155-467
               

               
Cow position:
               
chr17:979013-979318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
174, 84
               

               
Conread position:
               
156-364
               

               
Cow position:
               
chr17:16158644-16158434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
172, 146
               

               
Conread position:
               
157-421
               

               
Cow position:
               
chr17:10561786-10561517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 226
               

               
Conread position:
               
157-432
               

               
Cow position:
               
chr17:6848946-6848681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
171, 85
               

               
Conread position:
               
157-478
               

               
Cow position:
               
chr17:12591326-12590987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
90, 161
               

               
Conread position:
               
157-497
               

               
Cow position:
               
chr17:29292230-29292562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
157-505
               

               
Cow position:
               
chr17:39736326-39735983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
134, 95
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chr17:1020409-1020775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
155, 146
               

               
Conread position:
               
157-518
               

               
Cow position:
               
chr17:11156342-11156709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 74
               

               
Conread position:
               
157-521
               

               
Cow position:
               
chr17:29363208-29363585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 195
               

               
Conread position:
               
158-355
               

               
Cow position:
               
chr17:26730460-26730657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
166, 144
               

               
Conread position:
               
158-364
               

               
Cow position:
               
chr17:7590312-7590514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
171, 137
               

               
Conread position:
               
158-497
               

               
Cow position:
               
chr17:30539119-30539442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 39
               

               
Conread position:
               
158-510
               

               
Cow position:
               
chr17:9565451-9565101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
158-518
               

               
Cow position:
               
chr17:7760322-7760679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
164, 83
               

               
Conread position:
               
160-521
               

               
Cow position:
               
chr17:35387852-35388232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
148, 124
               

               
Conread position:
               
161-431
               

               
Cow position:
               
chr17:7229656-7229389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
168, 131
               

               
Conread position:
               
161-452
               

               
Cow position:
               
chr17:25718251-25717969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
204, 129
               

               
Conread position:
               
161-510
               

               
Cow position:
               
chr17:39012865-39012510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
172, 20
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr17:5000442-5000780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
99, 83
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr17:2662570-2662201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
163, 138
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr17:27142891-27142548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
265, 78
               

               
Conread position:
               
164-510
               

               
Cow position:
               
chr17:11172471-11172823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
164-510
               

               
Cow position:
               
chr17:40421815-40421461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
164-511
               

               
Cow position:
               
chr17:18592587-18592230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 191
               

               
Conread position:
               
164-512
               

               
Cow position:
               
chr17:5006343-5006701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
167-521
               

               
Cow position:
               
chr17:18860581-18860941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
167-540
               

               
Cow position:
               
chr17:5224542-5224162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
169-372
               

               
Cow position:
               
chr17:11368710-11368915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
175-510
               

               
Cow position:
               
chr17:20081665-20081987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
67, 34
               

               
Conread position:
               
175-532
               

               
Cow position:
               
chr17:26085158-26084802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
147, 29
               

               
Conread position:
               
176-367
               

               
Cow position:
               
chr17:36094136-36093943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
177-505
               

               
Cow position:
               
chr17:21628609-21628279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 13
               

               
Conread position:
               
177-508
               

               
Cow position:
               
chr17:3152192-3152530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
159, 94
               

               
Conread position:
               
177-515
               

               
Cow position:
               
chr17:31230991-31231327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 52
               

               
Conread position:
               
178-528
               

               
Cow position:
               
chr17:38647192-38646841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 209
               

               
Conread position:
               
180-440
               

               
Cow position:
               
chr17:4968241-4967983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 122
               

               
Conread position:
               
180-510
               

               
Cow position:
               
chr17:924007-923672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 6
               

               
Conread position:
               
181-422
               

               
Cow position:
               
chr17:23798409-23798168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
114, 206
               

               
Conread position:
               
181-497
               

               
Cow position:
               
chr17:3503709-3503390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
181-508
               

               
Cow position:
               
chr17:3782171-3781838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
119, 47
               

               
Conread position:
               
181-508
               

               
Cow position:
               
chr17:28359969-28359647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
182-452
               

               
Cow position:
               
chr17:14761995-14762267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
147, 118
               

               
Conread position:
               
183-443
               

               
Cow position:
               
chr17:552844-553092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
144, 94
               

               
Conread position:
               
184-497
               

               
Cow position:
               
chr17:18824911-18824595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 20
               

               
Conread position:
               
188-510
               

               
Cow position:
               
chr17:17121792-17121470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
226, 104
               

               
Conread position:
               
190-510
               

               
Cow position:
               
chr17:8279589-8279915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
191-439
               

               
Cow position:
               
chr17:14060656-14060906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
191-510
               

               
Cow position:
               
chr17:32651733-32651408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
138, 57
               

               
Conread position:
               
192-518
               

               
Cow position:
               
chr17:28540145-28539820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
195-470
               

               
Cow position:
               
chr17:21917759-21918042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
199-525
               

               
Cow position:
               
chr17:1275633-1275294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
109, 48
               

               
Conread position:
               
200-510
               

               
Cow position:
               
chr17:20889480-20889167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
138, 48
               

               
Conread position:
               
203-508
               

               
Cow position:
               
chr17:25541711-25542018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
206-510
               

               
Cow position:
               
chr17:34316614-34316916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
208-424
               

               
Cow position:
               
chr17:7654351-7654568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 27
               

               
Conread position:
               
215-500
               

               
Cow position:
               
chr17:7648306-7648022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
215-510
               

               
Cow position:
               
chr17:2034623-2034337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chr17:10020698-10020957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chr17:27549735-27549986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
219-510
               

               
Cow position:
               
chr17:36746235-36746526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
220-452
               

               
Cow position:
               
chr17:484687-484455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 168
               

               
Conread position:
               
223-509
               

               
Cow position:
               
chr17:6624339-6624051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 19
               

               
Conread position:
               
223-517
               

               
Cow position:
               
chr17:12059007-12059304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
235-505
               

               
Cow position:
               
chr17:33290736-33291013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
236-510
               

               
Cow position:
               
chr17:27765345-27765073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
240-440
               

               
Cow position:
               
chr17:10510588-10510789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
240-517
               

               
Cow position:
               
chr17:5694882-5695162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
240-526
               

               
Cow position:
               
chr17:3471488-3471196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
241-419
               

               
Cow position:
               
chr17:17266823-17267004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 177
               

               
Conread position:
               
241-469
               

               
Cow position:
               
chr17:38362915-38363141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
241-493
               

               
Cow position:
               
chr17:24761160-24761417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
241-493
               

               
Cow position:
               
chr17:43323697-43323948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
241-509
               

               
Cow position:
               
chr17:41289954-41290224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
242-521
               

               
Cow position:
               
chr17:15133210-15132944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
248, 10
               

               
Conread position:
               
242-526
               

               
Cow position:
               
chr17:15333643-15333937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
64, 146
               

               
Conread position:
               
243-510
               

               
Cow position:
               
chr17:9079138-9079394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
246-450
               

               
Cow position:
               
chr17:267522-267730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 46
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr17:21207080-21207330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
246-507
               

               
Cow position:
               
chr17:24550238-24549967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
246-510
               

               
Cow position:
               
chr17:13143627-13143898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
246-511
               

               
Cow position:
               
chr17:20912949-20912689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
254-415
               

               
Cow position:
               
chr17:20306105-20305941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
254-439
               

               
Cow position:
               
chr17:11921219-11921412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 191
               

               
Conread position:
               
254-440
               

               
Cow position:
               
chr17:34834159-34834347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
254-452
               

               
Cow position:
               
chr17:5381939-5382134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
79, 48
               

               
Conread position:
               
254-474
               

               
Cow position:
               
chr17:30734239-30734451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
254-491
               

               
Cow position:
               
chr17:34207760-34208009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chr17:42347169-42347424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 120
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr17:242693-242427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr17:11056314-11056583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr17:18884275-18884555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 264
               

               
Conread position:
               
254-540
               

               
Cow position:
               
chr17:1295516-1295812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
255-415
               

               
Cow position:
               
chr17:1311404-1311241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
255-439
               

               
Cow position:
               
chr17:25122354-25122539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
255-509
               

               
Cow position:
               
chr17:21323330-21323090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
132, 46
               

               
Conread position:
               
255-517
               

               
Cow position:
               
chr17:5246948-5246682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
255-524
               

               
Cow position:
               
chr17:5733414-5733671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
256-497
               

               
Cow position:
               
chr17:26881278-26881532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
258-508
               

               
Cow position:
               
chr17:21312758-21313010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
259-413
               

               
Cow position:
               
chr17:2839959-2839803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 127
               

               
Conread position:
               
259-497
               

               
Cow position:
               
chr17:32950325-32950077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
259-510
               

               
Cow position:
               
chr17:27679187-27679452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
260-493
               

               
Cow position:
               
chr17:4436181-4436422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
262-477
               

               
Cow position:
               
chr17:32221120-32221337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
262-497
               

               
Cow position:
               
chr17:35311474-35311226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
262-509
               

               
Cow position:
               
chr17:20358913-20358672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 43
               

               
Conread position:
               
262-510
               

               
Cow position:
               
chr17:3387320-3387086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
263-415
               

               
Cow position:
               
chr17:1505359-1505203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
263-501
               

               
Cow position:
               
chr17:26224557-26224319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
170, 25
               

               
Conread position:
               
268-510
               

               
Cow position:
               
chr17:26771316-26771562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 169
               

               
Conread position:
               
271-521
               

               
Cow position:
               
chr17:27306198-27305939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
275-510
               

               
Cow position:
               
chr17:27162686-27162444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
278-508
               

               
Cow position:
               
chr17:9778280-9778045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 26
               

               
Conread position:
               
281-414
               

               
Cow position:
               
chr17:9936010-9936143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
285-540
               

               
Cow position:
               
chr17:21031807-21031547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
287-496
               

               
Cow position:
               
chr17:21697761-21697538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
287-497
               

               
Cow position:
               
chr17:25141474-25141265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
12, 93
               

               
Conread position:
               
287-521
               

               
Cow position:
               
chr17:30204680-30204433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
288-510
               

               
Cow position:
               
chr17:18929078-18929286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
201, 17
               

               
Conread position:
               
288-521
               

               
Cow position:
               
chr17:33999025-33999266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
289-509
               

               
Cow position:
               
chr17:13236699-13236933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
289-510
               

               
Cow position:
               
chr17:26183244-26183014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
289-510
               

               
Cow position:
               
chr17:27697679-27697900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
290-492
               

               
Cow position:
               
chr17:33926106-33926316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
290-496
               

               
Cow position:
               
chr17:44232695-44232914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
290-501
               

               
Cow position:
               
chr17:12216052-12216276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
290-510
               

               
Cow position:
               
chr17:5745233-5745451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
292-460
               

               
Cow position:
               
chr17:38613269-38613088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chr17:20234247-20234021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chr17:25590216-25590442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
292-518
               

               
Cow position:
               
chr17:35185059-35184818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
292-521
               

               
Cow position:
               
chr17:21874288-21874538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chr17:22781709-22781483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 208
               

               
Conread position:
               
294-518
               

               
Cow position:
               
chr17:11386532-11386300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
294-539
               

               
Cow position:
               
chr17:10649857-10649609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
157, 16
               

               
Conread position:
               
295-510
               

               
Cow position:
               
chr17:4721507-4721279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
296-510
               

               
Cow position:
               
chr17:5895896-5896118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
297-540
               

               
Cow position:
               
chr17:21620732-21620473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
298-461
               

               
Cow position:
               
chr17:40792232-40792064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
133, 80
               

               
Conread position:
               
298-490
               

               
Cow position:
               
chr17:4824508-4824306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr17:23337004-23337222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
299-485
               

               
Cow position:
               
chr17:43634118-43633941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
300-540
               

               
Cow position:
               
chr17:20129674-20129437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
301-509
               

               
Cow position:
               
chr17:2079770-2079553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chr17:5041673-5041884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
302-512
               

               
Cow position:
               
chr17:15067619-15067833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
302-521
               

               
Cow position:
               
chr17:27819311-27819080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
305-508
               

               
Cow position:
               
chr17:21017802-21017588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
305-510
               

               
Cow position:
               
chr17:21363411-21363200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
305-518
               

               
Cow position:
               
chr17:3843485-3843271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
305-521
               

               
Cow position:
               
chr17:25168320-25168091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
106, 27
               

               
Conread position:
               
305-540
               

               
Cow position:
               
chr17:3306872-3306627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
306-510
               

               
Cow position:
               
chr17:20839556-20839766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 177
               

               
Conread position:
               
307-501
               

               
Cow position:
               
chr17:4606960-4606771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
307-520
               

               
Cow position:
               
chr17:43527972-43527760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 24
               

               
Conread position:
               
312-478
               

               
Cow position:
               
chr17:36268386-36268220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chr17:5380969-5380758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chr17:14088326-14088535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 196
               

               
Conread position:
               
313-510
               

               
Cow position:
               
chr17:7040949-7041153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
313-537
               

               
Cow position:
               
chr17:13409360-13409590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
316-493
               

               
Cow position:
               
chr17:37857729-37857925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
316-539
               

               
Cow position:
               
chr17:20874305-20874081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chr17:29040483-29040674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
326-496
               

               
Cow position:
               
chr17:3518271-3518446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
53, 87
               

               
Conread position:
               
326-510
               

               
Cow position:
               
chr17:966757-966947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chr17:3498682-3498872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chr17:21710486-21710297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
328-521
               

               
Cow position:
               
chr17:40312706-40312503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 184
               

               
Conread position:
               
330-509
               

               
Cow position:
               
chr17:3258473-3258290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
332-501
               

               
Cow position:
               
chr17:21412270-21412446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
334-508
               

               
Cow position:
               
chr17:1327997-1328176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
334-540
               

               
Cow position:
               
chr17:24877116-24876897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
335-433
               

               
Cow position:
               
chr17:20928887-20928789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
335-477
               

               
Cow position:
               
chr17:3442696-3442843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
335-508
               

               
Cow position:
               
chr17:3182612-3182790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
335-508
               

               
Cow position:
               
chr17:27667216-27667400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 49
               

               
Conread position:
               
335-510
               

               
Cow position:
               
chr17:25078029-25078201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
335-510
               

               
Cow position:
               
chr17:38116385-38116204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
335-522
               

               
Cow position:
               
chr17:20835569-20835372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
343-500
               

               
Cow position:
               
chr17:6996236-6996084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
345-510
               

               
Cow position:
               
chr17:16117460-16117637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
347-510
               

               
Cow position:
               
chr17:12054682-12054512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
348-513
               

               
Cow position:
               
chr17:36533616-36533450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
353-487
               

               
Cow position:
               
chr17:20269557-20269417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
361-508
               

               
Cow position:
               
chr17:23680927-23680778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
361-521
               

               
Cow position:
               
chr17:8644986-8644815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
384-509
               

               
Cow position:
               
chr17:27770038-27770164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
384-518
               

               
Cow position:
               
chr17:23883650-23883788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
386-508
               

               
Cow position:
               
chr17:22057251-22057379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
386-509
               

               
Cow position:
               
chr17:10432277-10432402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
43, 112
               

               
Conread position:
               
386-510
               

               
Cow position:
               
chr17:15376244-15376115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
386-510
               

               
Cow position:
               
chr17:23517246-23517375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
392-497
               

               
Cow position:
               
chr17:21742902-21743010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
396-505
               

               
Cow position:
               
chr17:11912788-11912903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               
Show alignments to all cow chromosomes.