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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_013818.5
        

               
Conread position:
               
1-538
               

               
Cow position:
               
chr3:68587260-68586737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr3:41129950-41129550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 279
               

               
Conread position:
               
14-314
               

               
Cow position:
               
chr3:9025854-9026157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
19-540
               

               
Cow position:
               
chr3:65969396-65968850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
20-226
               

               
Cow position:
               
chr3:77171540-77171332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
6, 18
               

               
Conread position:
               
20-375
               

               
Cow position:
               
chr3:72342470-72342112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
21-269
               

               
Cow position:
               
chr3:45314573-45314319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
22-220
               

               
Cow position:
               
chr3:74127279-74127485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
22-413
               

               
Cow position:
               
chr3:69144919-69144537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 259
               

               
Conread position:
               
23-266
               

               
Cow position:
               
chr3:84807106-84807350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
23-510
               

               
Cow position:
               
chr3:48241827-48241349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr3:67407151-67407394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
28-298
               

               
Cow position:
               
chr3:69785403-69785679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 223
               

               
Conread position:
               
28-398
               

               
Cow position:
               
chr3:81039533-81039900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
29-420
               

               
Cow position:
               
chr3:26488860-26489262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
32-224
               

               
Cow position:
               
chr3:11027486-11027294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 5
               

               
Conread position:
               
33-497
               

               
Cow position:
               
chr3:82019631-82020103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
33-510
               

               
Cow position:
               
chr3:71496922-71497418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
34-510
               

               
Cow position:
               
chr3:18067344-18066862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
35-363
               

               
Cow position:
               
chr3:58527588-58527277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
37-234
               

               
Cow position:
               
chr3:68289889-68289686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
38-220
               

               
Cow position:
               
chr3:58562905-58562717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
39-381
               

               
Cow position:
               
chr3:21014752-21015098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
44-348
               

               
Cow position:
               
chr3:59945327-59945020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 270
               

               
Conread position:
               
45-500
               

               
Cow position:
               
chr3:59597371-59596942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
46-521
               

               
Cow position:
               
chr3:78077386-78076903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
50-227
               

               
Cow position:
               
chr3:21694421-21694241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
52-377
               

               
Cow position:
               
chr3:17331908-17331592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
52-401
               

               
Cow position:
               
chr3:24468193-24468536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
53-326
               

               
Cow position:
               
chr3:36160009-36160276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
53-391
               

               
Cow position:
               
chr3:13380089-13380434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
54-226
               

               
Cow position:
               
chr3:76300962-76300789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
54-233
               

               
Cow position:
               
chr3:76056097-76056274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
54-234
               

               
Cow position:
               
chr3:62186344-62186161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
54-381
               

               
Cow position:
               
chr3:76024692-76024381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
68, 45
               

               
Conread position:
               
54-385
               

               
Cow position:
               
chr3:54551519-54551866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 164
               

               
Conread position:
               
54-415
               

               
Cow position:
               
chr3:55819938-55819576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
69, 80
               

               
Conread position:
               
54-433
               

               
Cow position:
               
chr3:63269423-63269036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
54-493
               

               
Cow position:
               
chr3:11253978-11254404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
54-496
               

               
Cow position:
               
chr3:71238341-71237899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
54-510
               

               
Cow position:
               
chr3:3985504-3985058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 19
               

               
Conread position:
               
54-510
               

               
Cow position:
               
chr3:83474943-83474477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
69, 199
               

               
Conread position:
               
55-227
               

               
Cow position:
               
chr3:51608996-51609169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
55-266
               

               
Cow position:
               
chr3:51150322-51150106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
55-276
               

               
Cow position:
               
chr3:78071606-78071824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
55-283
               

               
Cow position:
               
chr3:15973757-15973527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
55-297
               

               
Cow position:
               
chr3:49363300-49363056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
55-299
               

               
Cow position:
               
chr3:27082849-27083104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
55-301
               

               
Cow position:
               
chr3:26337824-26338084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
55-313
               

               
Cow position:
               
chr3:54067982-54067729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
68, 44
               

               
Conread position:
               
55-313
               

               
Cow position:
               
chr3:81234575-81234318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
55-325
               

               
Cow position:
               
chr3:76270078-76269817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
55-354
               

               
Cow position:
               
chr3:58317755-58318065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
68, 237
               

               
Conread position:
               
55-363
               

               
Cow position:
               
chr3:59299761-59299458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 89
               

               
Conread position:
               
55-386
               

               
Cow position:
               
chr3:48900143-48900481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
55-401
               

               
Cow position:
               
chr3:34871759-34871411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
18, 151
               

               
Conread position:
               
55-434
               

               
Cow position:
               
chr3:30940993-30940626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
55-500
               

               
Cow position:
               
chr3:75080942-75080504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chr3:59605030-59604601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chr3:13899266-13899725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
68, 155
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chr3:49118845-49119304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
55-513
               

               
Cow position:
               
chr3:71247200-71246762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
276, 17
               

               
Conread position:
               
55-521
               

               
Cow position:
               
chr3:72474114-72473621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 108
               

               
Conread position:
               
55-521
               

               
Cow position:
               
chr3:77188628-77188160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chr3:175135-174630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chr3:3032598-3032097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
55-540
               

               
Cow position:
               
chr3:23168880-23169375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
55-540
               

               
Cow position:
               
chr3:27274715-27274234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
56-427
               

               
Cow position:
               
chr3:75853143-75853514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
6, 54
               

               
Conread position:
               
56-433
               

               
Cow position:
               
chr3:57274244-57273877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
56-522
               

               
Cow position:
               
chr3:64280753-64281219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
57-234
               

               
Cow position:
               
chr3:83705352-83705527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
57-510
               

               
Cow position:
               
chr3:2630946-2630526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
276, 64
               

               
Conread position:
               
58-227
               

               
Cow position:
               
chr3:60371173-60370999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
58-233
               

               
Cow position:
               
chr3:40957945-40958116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
58-234
               

               
Cow position:
               
chr3:28883977-28884151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
58-297
               

               
Cow position:
               
chr3:40212848-40213086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
58-299
               

               
Cow position:
               
chr3:68004523-68004757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr3:27976337-27976606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
58-369
               

               
Cow position:
               
chr3:58134499-58134814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 104
               

               
Conread position:
               
58-376
               

               
Cow position:
               
chr3:71238659-71238340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
58-418
               

               
Cow position:
               
chr3:24615657-24616011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chr3:36375356-36375739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
58-452
               

               
Cow position:
               
chr3:45211486-45211083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
58-486
               

               
Cow position:
               
chr3:15051768-15052193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
58-486
               

               
Cow position:
               
chr3:59610532-59610972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
58-493
               

               
Cow position:
               
chr3:26970994-26970570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
58-494
               

               
Cow position:
               
chr3:68880945-68881368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
58-505
               

               
Cow position:
               
chr3:2396610-2397050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chr3:23471278-23471740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 90
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chr3:49482532-49482976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chr3:78443383-78443835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chr3:79884297-79884758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
58-517
               

               
Cow position:
               
chr3:68707836-68708283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
59-232
               

               
Cow position:
               
chr3:80958322-80958499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
59-265
               

               
Cow position:
               
chr3:63860426-63860632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 80
               

               
Conread position:
               
59-412
               

               
Cow position:
               
chr3:54100530-54100891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
59-423
               

               
Cow position:
               
chr3:76922489-76922842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
59-433
               

               
Cow position:
               
chr3:12705363-12705735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
59-461
               

               
Cow position:
               
chr3:83215452-83215030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
59-497
               

               
Cow position:
               
chr3:7337605-7338033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
59-501
               

               
Cow position:
               
chr3:59474304-59473849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
59-510
               

               
Cow position:
               
chr3:54739717-54740143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
59-510
               

               
Cow position:
               
chr3:63180049-63179596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 125
               

               
Conread position:
               
59-511
               

               
Cow position:
               
chr3:8061302-8060857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
59-521
               

               
Cow position:
               
chr3:26904281-26903829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
60-329
               

               
Cow position:
               
chr3:23203044-23203319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
60-395
               

               
Cow position:
               
chr3:62788997-62789331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
182, 24
               

               
Conread position:
               
60-466
               

               
Cow position:
               
chr3:53836527-53836913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
60-493
               

               
Cow position:
               
chr3:16752073-16752508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
60-520
               

               
Cow position:
               
chr3:54903751-54903288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 195
               

               
Conread position:
               
61-510
               

               
Cow position:
               
chr3:4461306-4461761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
63-220
               

               
Cow position:
               
chr3:44218951-44218789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
63-381
               

               
Cow position:
               
chr3:3889397-3889705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
199, 60
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chr3:52419127-52418693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 193
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chr3:60933599-60933143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
64-281
               

               
Cow position:
               
chr3:41863801-41863587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
64-350
               

               
Cow position:
               
chr3:9117212-9116920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
64-490
               

               
Cow position:
               
chr3:74234360-74233943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
64-510
               

               
Cow position:
               
chr3:7678844-7678401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
64-510
               

               
Cow position:
               
chr3:53150512-53150055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 84
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr3:83988709-83988425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
69-510
               

               
Cow position:
               
chr3:55124111-55124550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
69-510
               

               
Cow position:
               
chr3:75158530-75158093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
69-513
               

               
Cow position:
               
chr3:30463002-30463441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
69-518
               

               
Cow position:
               
chr3:74500431-74499944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
59, 67
               

               
Conread position:
               
69-521
               

               
Cow position:
               
chr3:65237198-65236739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
69-527
               

               
Cow position:
               
chr3:2538412-2537962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
70-196
               

               
Cow position:
               
chr3:42933656-42933528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-214
               

               
Cow position:
               
chr3:20888488-20888633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 121
               

               
Conread position:
               
70-220
               

               
Cow position:
               
chr3:20065974-20066126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
70-227
               

               
Cow position:
               
chr3:25702158-25702325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-227
               

               
Cow position:
               
chr3:29234505-29234664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
70-233
               

               
Cow position:
               
chr3:59317873-59317713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
70-233
               

               
Cow position:
               
chr3:84137641-84137804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
70-258
               

               
Cow position:
               
chr3:79398318-79398128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-260
               

               
Cow position:
               
chr3:25735730-25735922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-283
               

               
Cow position:
               
chr3:6728148-6728369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-348
               

               
Cow position:
               
chr3:22165242-22165523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
70-349
               

               
Cow position:
               
chr3:3656688-3656407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
70-355
               

               
Cow position:
               
chr3:18059877-18059589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
70-366
               

               
Cow position:
               
chr3:48468349-48468059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 214
               

               
Conread position:
               
70-453
               

               
Cow position:
               
chr3:55318725-55319111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 87
               

               
Conread position:
               
70-509
               

               
Cow position:
               
chr3:30180256-30179811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
70-521
               

               
Cow position:
               
chr3:17694829-17695292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 176
               

               
Conread position:
               
71-421
               

               
Cow position:
               
chr3:62046843-62046485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
52, 213
               

               
Conread position:
               
71-508
               

               
Cow position:
               
chr3:29813398-29812974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 55
               

               
Conread position:
               
71-510
               

               
Cow position:
               
chr3:80072315-80071845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 330
               

               
Conread position:
               
72-486
               

               
Cow position:
               
chr3:76267803-76268225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
73-223
               

               
Cow position:
               
chr3:22078248-22078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chr3:3011315-3011163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chr3:3453752-3453596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chr3:55105976-55106132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
73-228
               

               
Cow position:
               
chr3:8522984-8523138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
73-233
               

               
Cow position:
               
chr3:74050536-74050691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
73-238
               

               
Cow position:
               
chr3:77098654-77098817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
73-249
               

               
Cow position:
               
chr3:52845725-52845551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
73-266
               

               
Cow position:
               
chr3:75966612-75966803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
73-274
               

               
Cow position:
               
chr3:32317658-32317861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
73-294
               

               
Cow position:
               
chr3:73335449-73335234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
73-295
               

               
Cow position:
               
chr3:23131998-23132220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 68
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr3:10668709-10668958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chr3:75777899-75778146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
73-348
               

               
Cow position:
               
chr3:3316638-3316918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
73-349
               

               
Cow position:
               
chr3:31361593-31361312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
73-351
               

               
Cow position:
               
chr3:57704502-57704214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
73-372
               

               
Cow position:
               
chr3:76156156-76155858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
73-396
               

               
Cow position:
               
chr3:55177581-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
218, 50
               

               
Conread position:
               
73-433
               

               
Cow position:
               
chr3:68156897-68156552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
73-442
               

               
Cow position:
               
chr3:7662028-7661651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 166
               

               
Conread position:
               
73-452
               

               
Cow position:
               
chr3:54506876-54506508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
73-470
               

               
Cow position:
               
chr3:22887755-22888148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 232
               

               
Conread position:
               
73-486
               

               
Cow position:
               
chr3:44932683-44932260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
73-497
               

               
Cow position:
               
chr3:16333975-16333547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 226
               

               
Conread position:
               
73-500
               

               
Cow position:
               
chr3:48363239-48362821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
73-501
               

               
Cow position:
               
chr3:50768849-50768416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
73-501
               

               
Cow position:
               
chr3:75480168-75479749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 66
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr3:9641725-9641294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr3:17936677-17937109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr3:54781823-54782282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 111
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr3:55189580-55190020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 303
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr3:57764383-57763953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 39
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chr3:75570276-75570711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 132
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chr3:2392799-2393238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
73-513
               

               
Cow position:
               
chr3:53428748-53429166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
73-517
               

               
Cow position:
               
chr3:22221496-22221074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chr3:37041586-37041143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
73-526
               

               
Cow position:
               
chr3:71231568-71231117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
73-538
               

               
Cow position:
               
chr3:22675937-22676383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
74-302
               

               
Cow position:
               
chr3:12090847-12090615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
74-377
               

               
Cow position:
               
chr3:78093223-78093518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
74-401
               

               
Cow position:
               
chr3:19586034-19585704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
74-433
               

               
Cow position:
               
chr3:6182063-6182389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
74-491
               

               
Cow position:
               
chr3:5044640-5045063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 187
               

               
Conread position:
               
74-500
               

               
Cow position:
               
chr3:8393509-8393084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
74-510
               

               
Cow position:
               
chr3:7330968-7331391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
74-510
               

               
Cow position:
               
chr3:48253049-48252625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
74-538
               

               
Cow position:
               
chr3:54435138-54434669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
76-275
               

               
Cow position:
               
chr3:20021435-20021238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
76-330
               

               
Cow position:
               
chr3:19682873-19682607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
76-346
               

               
Cow position:
               
chr3:75238627-75238354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 162
               

               
Conread position:
               
76-407
               

               
Cow position:
               
chr3:12978448-12978780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
76-409
               

               
Cow position:
               
chr3:48072719-48073039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
76-423
               

               
Cow position:
               
chr3:70761956-70762302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
76-497
               

               
Cow position:
               
chr3:51233937-51234355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 50
               

               
Conread position:
               
76-518
               

               
Cow position:
               
chr3:80565132-80564680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
76-519
               

               
Cow position:
               
chr3:38864285-38863832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
144, 47
               

               
Conread position:
               
76-534
               

               
Cow position:
               
chr3:17221966-17222439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
76-540
               

               
Cow position:
               
chr3:55970682-55970202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 106
               

               
Conread position:
               
77-233
               

               
Cow position:
               
chr3:68624386-68624228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr3:70756473-70756680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 189
               

               
Conread position:
               
77-510
               

               
Cow position:
               
chr3:17456101-17456541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
77-510
               

               
Cow position:
               
chr3:53270999-53270554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 220
               

               
Conread position:
               
77-510
               

               
Cow position:
               
chr3:70676397-70675948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
77-510
               

               
Cow position:
               
chr3:80973517-80973081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
79-508
               

               
Cow position:
               
chr3:68627523-68627945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr3:14601538-14601985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
81-233
               

               
Cow position:
               
chr3:63069199-63069355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
81-249
               

               
Cow position:
               
chr3:17531574-17531743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
81-293
               

               
Cow position:
               
chr3:49996555-49996772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
81-446
               

               
Cow position:
               
chr3:74079476-74079839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
81-510
               

               
Cow position:
               
chr3:1830411-1830835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
82-440
               

               
Cow position:
               
chr3:11063522-11063187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
82-510
               

               
Cow position:
               
chr3:15159193-15158769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
83-196
               

               
Cow position:
               
chr3:70632307-70632192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
83-217
               

               
Cow position:
               
chr3:73410443-73410313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
83-219
               

               
Cow position:
               
chr3:43388965-43389103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr3:621601-621453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr3:32248174-32248030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr3:62789790-62789936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr3:79105420-79105564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-226
               

               
Cow position:
               
chr3:49787716-49787576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
83-226
               

               
Cow position:
               
chr3:61680477-61680335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr3:62370217-62370072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr3:74515176-74515321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr3:83934884-83934742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chr3:2016592-2016447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chr3:8147363-8147514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chr3:18699948-18700099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chr3:5003792-5003644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
83-234
               

               
Cow position:
               
chr3:19044608-19044756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 120
               

               
Conread position:
               
83-234
               

               
Cow position:
               
chr3:28902602-28902749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
83-242
               

               
Cow position:
               
chr3:562629-562792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
83-249
               

               
Cow position:
               
chr3:76168469-76168637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr3:55730306-55730475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-251
               

               
Cow position:
               
chr3:37641486-37641318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
83-265
               

               
Cow position:
               
chr3:986175-985993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
83-265
               

               
Cow position:
               
chr3:9718089-9718272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 174
               

               
Conread position:
               
83-265
               

               
Cow position:
               
chr3:59947828-59947644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-265
               

               
Cow position:
               
chr3:61023860-61024044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-266
               

               
Cow position:
               
chr3:32376972-32376792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
83-266
               

               
Cow position:
               
chr3:48483338-48483156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-267
               

               
Cow position:
               
chr3:82195644-82195463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
83-272
               

               
Cow position:
               
chr3:7381672-7381857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
83-275
               

               
Cow position:
               
chr3:5703336-5703147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
83-278
               

               
Cow position:
               
chr3:13240913-13241110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-282
               

               
Cow position:
               
chr3:83770894-83770693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-283
               

               
Cow position:
               
chr3:29334250-29334455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-283
               

               
Cow position:
               
chr3:44960105-44959903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
83-297
               

               
Cow position:
               
chr3:11281929-11281713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-298
               

               
Cow position:
               
chr3:9121002-9120791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
83-303
               

               
Cow position:
               
chr3:39996733-39996950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
83-324
               

               
Cow position:
               
chr3:82366289-82366055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
83-326
               

               
Cow position:
               
chr3:5707050-5707295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 231
               

               
Conread position:
               
83-326
               

               
Cow position:
               
chr3:10841976-10841732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 230
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chr3:40145627-40145385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 195
               

               
Conread position:
               
83-330
               

               
Cow position:
               
chr3:31349948-31350190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
83-339
               

               
Cow position:
               
chr3:2638093-2637836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
83-340
               

               
Cow position:
               
chr3:64196985-64196728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
83-350
               

               
Cow position:
               
chr3:1037188-1036918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 222
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr3:15950757-15951023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
83-359
               

               
Cow position:
               
chr3:14547159-14546888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
83-361
               

               
Cow position:
               
chr3:15443566-15443847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 174
               

               
Conread position:
               
83-366
               

               
Cow position:
               
chr3:22888854-22889139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 240
               

               
Conread position:
               
83-370
               

               
Cow position:
               
chr3:51033532-51033243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
83-381
               

               
Cow position:
               
chr3:1517353-1517652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 43
               

               
Conread position:
               
83-381
               

               
Cow position:
               
chr3:72255258-72255559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
83-388
               

               
Cow position:
               
chr3:47417411-47417711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
83-393
               

               
Cow position:
               
chr3:79196923-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
83-396
               

               
Cow position:
               
chr3:70333809-70334117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 95
               

               
Conread position:
               
83-396
               

               
Cow position:
               
chr3:73820205-73820523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
83-398
               

               
Cow position:
               
chr3:2648348-2648668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
83-399
               

               
Cow position:
               
chr3:81440000-81439679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
83-402
               

               
Cow position:
               
chr3:77582266-77581950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
83-413
               

               
Cow position:
               
chr3:60264562-60264884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
83-415
               

               
Cow position:
               
chr3:32787622-32787289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
83-420
               

               
Cow position:
               
chr3:19793057-19792716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
83-429
               

               
Cow position:
               
chr3:53318570-53318218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
83-433
               

               
Cow position:
               
chr3:38035428-38035781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
83-433
               

               
Cow position:
               
chr3:55434491-55434142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
83-439
               

               
Cow position:
               
chr3:67520016-67520370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
83-440
               

               
Cow position:
               
chr3:4319879-4319519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
35, 225
               

               
Conread position:
               
83-440
               

               
Cow position:
               
chr3:20841719-20842051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
83-440
               

               
Cow position:
               
chr3:38828911-38828571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
246, 65
               

               
Conread position:
               
83-449
               

               
Cow position:
               
chr3:23105205-23105575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
83-452
               

               
Cow position:
               
chr3:70609785-70609410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
83-452
               

               
Cow position:
               
chr3:76713152-76713534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
83-458
               

               
Cow position:
               
chr3:45667183-45667555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
83-466
               

               
Cow position:
               
chr3:68145695-68146064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
83-473
               

               
Cow position:
               
chr3:189035-188624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-475
               

               
Cow position:
               
chr3:17134491-17134102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
251, 39
               

               
Conread position:
               
83-477
               

               
Cow position:
               
chr3:53222172-53221775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
83-477
               

               
Cow position:
               
chr3:78092351-78092745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
83-486
               

               
Cow position:
               
chr3:43233663-43233255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 43
               

               
Conread position:
               
83-486
               

               
Cow position:
               
chr3:81087476-81087858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
83-487
               

               
Cow position:
               
chr3:56612522-56612116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
83-489
               

               
Cow position:
               
chr3:52651920-52652325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
83-493
               

               
Cow position:
               
chr3:18687061-18686661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
83-496
               

               
Cow position:
               
chr3:68648337-68647902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chr3:31225582-31225191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
83-500
               

               
Cow position:
               
chr3:18393242-18393646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
83-500
               

               
Cow position:
               
chr3:83454997-83455414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
83-504
               

               
Cow position:
               
chr3:83491240-83490811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 43
               

               
Conread position:
               
83-505
               

               
Cow position:
               
chr3:69416618-69417055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr3:13301689-13302126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chr3:68303478-68303058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 172
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:210482-210050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 268
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:7566261-7566691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:7763818-7763391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:10958084-10958500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:13329633-13330044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:20663382-20663810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 152
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:20674719-20675151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:20802480-20802901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:24852429-24852859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:31309194-31309627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:32585313-32584886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 214
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:49679294-49678850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:53046498-53046929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 156
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:53790382-53790816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:56583008-56582571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:65058859-65058430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:66900567-66901014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chr3:67929099-67929538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 204
               

               
Conread position:
               
83-513
               

               
Cow position:
               
chr3:2506316-2506756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
83-513
               

               
Cow position:
               
chr3:73395275-73394842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 66
               

               
Conread position:
               
83-517
               

               
Cow position:
               
chr3:58540357-58540812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
37, 229
               

               
Conread position:
               
83-518
               

               
Cow position:
               
chr3:61224589-61225015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr3:53910266-53909828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr3:59391965-59392393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 132
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chr3:80740713-80740292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
217, 16
               

               
Conread position:
               
83-535
               

               
Cow position:
               
chr3:76138619-76138193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
83-537
               

               
Cow position:
               
chr3:11987488-11987031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
83-538
               

               
Cow position:
               
chr3:62998835-62999304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chr3:2036464-2035993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chr3:23408204-23408649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chr3:57577856-57577394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
84-218
               

               
Cow position:
               
chr3:6547585-6547449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
84-234
               

               
Cow position:
               
chr3:14211827-14211973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
84-234
               

               
Cow position:
               
chr3:67942374-67942526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-266
               

               
Cow position:
               
chr3:65308294-65308476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
84-271
               

               
Cow position:
               
chr3:47198967-47199154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
84-285
               

               
Cow position:
               
chr3:79272417-79272614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
84-294
               

               
Cow position:
               
chr3:81923634-81923849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 160
               

               
Conread position:
               
84-312
               

               
Cow position:
               
chr3:83889408-83889179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 171
               

               
Conread position:
               
84-330
               

               
Cow position:
               
chr3:47753396-47753139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
84-330
               

               
Cow position:
               
chr3:66631184-66631435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 227
               

               
Conread position:
               
84-332
               

               
Cow position:
               
chr3:59702333-59702086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
84-372
               

               
Cow position:
               
chr3:59040729-59040438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
84-381
               

               
Cow position:
               
chr3:17058388-17058678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
245, 42
               

               
Conread position:
               
84-381
               

               
Cow position:
               
chr3:79271550-79271861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
84-410
               

               
Cow position:
               
chr3:68616176-68616491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
222, 39
               

               
Conread position:
               
84-412
               

               
Cow position:
               
chr3:48810479-48810805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
84-433
               

               
Cow position:
               
chr3:54373698-54374050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 210
               

               
Conread position:
               
84-440
               

               
Cow position:
               
chr3:74119271-74119637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
84-442
               

               
Cow position:
               
chr3:53875603-53875957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
39, 203
               

               
Conread position:
               
84-476
               

               
Cow position:
               
chr3:63316286-63315893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
84-493
               

               
Cow position:
               
chr3:3556707-3556289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 252
               

               
Conread position:
               
84-509
               

               
Cow position:
               
chr3:2675191-2674758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 172
               

               
Conread position:
               
84-509
               

               
Cow position:
               
chr3:45183662-45184116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 194
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chr3:2025362-2024912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 311
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chr3:9663010-9663459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 212
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chr3:14553031-14552606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 40
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chr3:36569879-36570322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
84-517
               

               
Cow position:
               
chr3:20996843-20997258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
84-521
               

               
Cow position:
               
chr3:33252733-33253164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
84-521
               

               
Cow position:
               
chr3:53384121-53384569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
84-525
               

               
Cow position:
               
chr3:51578165-51578608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
84-540
               

               
Cow position:
               
chr3:29596554-29596086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
85-218
               

               
Cow position:
               
chr3:62312956-62312821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
85-226
               

               
Cow position:
               
chr3:58929374-58929517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
85-234
               

               
Cow position:
               
chr3:83199671-83199521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
85-263
               

               
Cow position:
               
chr3:27286673-27286499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
85-278
               

               
Cow position:
               
chr3:18249113-18248918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
85-278
               

               
Cow position:
               
chr3:35624385-35624579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
85-286
               

               
Cow position:
               
chr3:53604586-53604789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
85-293
               

               
Cow position:
               
chr3:1011650-1011437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
85-299
               

               
Cow position:
               
chr3:8181791-8182005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 134
               

               
Conread position:
               
85-310
               

               
Cow position:
               
chr3:84174462-84174234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 195
               

               
Conread position:
               
85-325
               

               
Cow position:
               
chr3:71474249-71474488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
85-327
               

               
Cow position:
               
chr3:11640894-11640646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
85-372
               

               
Cow position:
               
chr3:42796360-42796638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
85-390
               

               
Cow position:
               
chr3:3883662-3883965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
85-402
               

               
Cow position:
               
chr3:15153846-15153534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
85-415
               

               
Cow position:
               
chr3:58960435-58960760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
206, 45
               

               
Conread position:
               
85-430
               

               
Cow position:
               
chr3:19793432-19793776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
85-433
               

               
Cow position:
               
chr3:83797665-83798028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 239
               

               
Conread position:
               
85-477
               

               
Cow position:
               
chr3:70334534-70334940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 212
               

               
Conread position:
               
85-497
               

               
Cow position:
               
chr3:79221011-79220591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 21
               

               
Conread position:
               
85-500
               

               
Cow position:
               
chr3:45882057-45881647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr3:29891248-29891689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr3:49460768-49461209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr3:66884872-66885310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chr3:73961536-73961951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
41, 221
               

               
Conread position:
               
85-513
               

               
Cow position:
               
chr3:59000605-59001020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
85-517
               

               
Cow position:
               
chr3:25690958-25690506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 233
               

               
Conread position:
               
85-521
               

               
Cow position:
               
chr3:57754317-57754766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
85-522
               

               
Cow position:
               
chr3:2518383-2518824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
85-522
               

               
Cow position:
               
chr3:31419853-31419416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 201
               

               
Conread position:
               
85-529
               

               
Cow position:
               
chr3:15953924-15954368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 229
               

               
Conread position:
               
85-540
               

               
Cow position:
               
chr3:16547828-16547371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
36, 202
               

               
Conread position:
               
86-330
               

               
Cow position:
               
chr3:84250392-84250629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
86-363
               

               
Cow position:
               
chr3:26992730-26992446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
86-427
               

               
Cow position:
               
chr3:26739267-26739603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
87-323
               

               
Cow position:
               
chr3:32570014-32569774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 233
               

               
Conread position:
               
87-323
               

               
Cow position:
               
chr3:80709708-80709948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
87-370
               

               
Cow position:
               
chr3:56678191-56678481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr3:11199820-11200137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
87-430
               

               
Cow position:
               
chr3:19199143-19198801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
87-439
               

               
Cow position:
               
chr3:67698435-67698085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
36, 167
               

               
Conread position:
               
87-465
               

               
Cow position:
               
chr3:32310257-32310666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 100
               

               
Conread position:
               
87-492
               

               
Cow position:
               
chr3:61857665-61857242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
87-493
               

               
Cow position:
               
chr3:74088021-74088429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
87-496
               

               
Cow position:
               
chr3:39969707-39970130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
87-508
               

               
Cow position:
               
chr3:54049873-54050289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr3:18855234-18854821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr3:20130093-20129669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr3:23877155-23876726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 6
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr3:55116821-55117244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr3:72777389-72776968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
155, 23
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chr3:79902653-79902231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
87-519
               

               
Cow position:
               
chr3:31298001-31298440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 228
               

               
Conread position:
               
88-372
               

               
Cow position:
               
chr3:35055821-35056108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
88-436
               

               
Cow position:
               
chr3:59035198-59034841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 330
               

               
Conread position:
               
88-477
               

               
Cow position:
               
chr3:39661299-39661689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
88-496
               

               
Cow position:
               
chr3:30008751-30009168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 249
               

               
Conread position:
               
88-510
               

               
Cow position:
               
chr3:17957616-17957195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
88-510
               

               
Cow position:
               
chr3:48851812-48852238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
89-434
               

               
Cow position:
               
chr3:46005861-46006217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 126
               

               
Conread position:
               
89-497
               

               
Cow position:
               
chr3:52608335-52607924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
91-380
               

               
Cow position:
               
chr3:30026522-30026239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
91-486
               

               
Cow position:
               
chr3:55947751-55947327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
91-496
               

               
Cow position:
               
chr3:74620841-74621255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
91-508
               

               
Cow position:
               
chr3:53592534-53592970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 219
               

               
Conread position:
               
91-510
               

               
Cow position:
               
chr3:18185229-18184796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
91-511
               

               
Cow position:
               
chr3:45279621-45279184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
44, 226
               

               
Conread position:
               
92-493
               

               
Cow position:
               
chr3:13890631-13890222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
30, 221
               

               
Conread position:
               
93-452
               

               
Cow position:
               
chr3:25945245-25944865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
93-510
               

               
Cow position:
               
chr3:46160709-46161117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
96-411
               

               
Cow position:
               
chr3:18143966-18144284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 288
               

               
Conread position:
               
96-510
               

               
Cow position:
               
chr3:54946271-54945853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 47
               

               
Conread position:
               
97-508
               

               
Cow position:
               
chr3:12255625-12255210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
99-381
               

               
Cow position:
               
chr3:64526993-64526710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
99-452
               

               
Cow position:
               
chr3:74134851-74134493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
99-497
               

               
Cow position:
               
chr3:44102111-44101723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chr3:14801891-14801479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 210
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chr3:15388366-15387939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 222
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chr3:31055866-31056274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 180
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chr3:65413130-65413547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 284
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chr3:77365143-77365566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
99-534
               

               
Cow position:
               
chr3:18498162-18497726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
100-223
               

               
Cow position:
               
chr3:73162253-73162370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
100-271
               

               
Cow position:
               
chr3:81666942-81666772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 42
               

               
Conread position:
               
100-483
               

               
Cow position:
               
chr3:30055306-30055691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
22, 207
               

               
Conread position:
               
100-511
               

               
Cow position:
               
chr3:75050478-75050893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
100-537
               

               
Cow position:
               
chr3:72391231-72390783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 209
               

               
Conread position:
               
103-508
               

               
Cow position:
               
chr3:26681674-26682063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
103-521
               

               
Cow position:
               
chr3:59649398-59648975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
104-501
               

               
Cow position:
               
chr3:45648271-45647877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
106-428
               

               
Cow position:
               
chr3:15751577-15751906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
109-497
               

               
Cow position:
               
chr3:69750576-69750959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
113-226
               

               
Cow position:
               
chr3:42589230-42589116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
113-539
               

               
Cow position:
               
chr3:6690133-6689691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 195
               

               
Conread position:
               
114-510
               

               
Cow position:
               
chr3:46341602-46341189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
37, 210
               

               
Conread position:
               
115-267
               

               
Cow position:
               
chr3:41366581-41366733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
118-508
               

               
Cow position:
               
chr3:12711788-12712193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr3:84157320-84157563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
176, 42
               

               
Conread position:
               
119-493
               

               
Cow position:
               
chr3:73461088-73460723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
119-500
               

               
Cow position:
               
chr3:70565612-70566000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 182
               

               
Conread position:
               
119-539
               

               
Cow position:
               
chr3:72168605-72169023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
204, 52
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr3:54481677-54481893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
121-385
               

               
Cow position:
               
chr3:38783728-38783474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
207, 19
               

               
Conread position:
               
121-403
               

               
Cow position:
               
chr3:79645307-79645603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 177
               

               
Conread position:
               
121-430
               

               
Cow position:
               
chr3:1453003-1453308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
206, 120
               

               
Conread position:
               
121-509
               

               
Cow position:
               
chr3:39066453-39066062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
121-510
               

               
Cow position:
               
chr3:28898099-28898494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 171
               

               
Conread position:
               
121-510
               

               
Cow position:
               
chr3:31206999-31206600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
121-520
               

               
Cow position:
               
chr3:73709167-73708769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 19
               

               
Conread position:
               
121-521
               

               
Cow position:
               
chr3:53572629-53573036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 191
               

               
Conread position:
               
121-523
               

               
Cow position:
               
chr3:77271158-77271549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
122-303
               

               
Cow position:
               
chr3:7581595-7581776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
122-518
               

               
Cow position:
               
chr3:49328062-49327664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
169, 27
               

               
Conread position:
               
123-428
               

               
Cow position:
               
chr3:30222314-30222002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
10, 183
               

               
Conread position:
               
125-330
               

               
Cow position:
               
chr3:15173202-15172993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
125-496
               

               
Cow position:
               
chr3:17934818-17935181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 208
               

               
Conread position:
               
125-537
               

               
Cow position:
               
chr3:81371767-81371356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
124, 9
               

               
Conread position:
               
126-521
               

               
Cow position:
               
chr3:37186944-37186550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr3:74900522-74900723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
127-510
               

               
Cow position:
               
chr3:52863066-52863455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 48
               

               
Conread position:
               
128-390
               

               
Cow position:
               
chr3:84243654-84243915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
201, 42
               

               
Conread position:
               
128-439
               

               
Cow position:
               
chr3:5366884-5366577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
195, 99
               

               
Conread position:
               
128-508
               

               
Cow position:
               
chr3:59588629-59588249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
129-351
               

               
Cow position:
               
chr3:55984213-55983986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
165, 88
               

               
Conread position:
               
130-471
               

               
Cow position:
               
chr3:67930072-67930411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
131-375
               

               
Cow position:
               
chr3:22510136-22509894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
198, 22
               

               
Conread position:
               
131-405
               

               
Cow position:
               
chr3:53508724-53508460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
132-298
               

               
Cow position:
               
chr3:82629427-82629262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
132-358
               

               
Cow position:
               
chr3:33329931-33329698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
132-376
               

               
Cow position:
               
chr3:84175712-84175959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
165, 29
               

               
Conread position:
               
132-429
               

               
Cow position:
               
chr3:49790698-49790993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 148
               

               
Conread position:
               
132-467
               

               
Cow position:
               
chr3:59621536-59621865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 163
               

               
Conread position:
               
132-473
               

               
Cow position:
               
chr3:17447503-17447843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 111
               

               
Conread position:
               
132-475
               

               
Cow position:
               
chr3:13507580-13507226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
132-488
               

               
Cow position:
               
chr3:15752524-15752878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
132-496
               

               
Cow position:
               
chr3:22716184-22716538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
132-496
               

               
Cow position:
               
chr3:67543756-67544133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr3:73467747-73467349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 194
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chr3:35299777-35299402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chr3:50069877-50069507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chr3:70900002-70899628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 60
               

               
Conread position:
               
132-513
               

               
Cow position:
               
chr3:80581767-80581396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 103
               

               
Conread position:
               
132-517
               

               
Cow position:
               
chr3:50763233-50762843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
134, 115
               

               
Conread position:
               
132-518
               

               
Cow position:
               
chr3:16254731-16255081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
319, 23
               

               
Conread position:
               
132-518
               

               
Cow position:
               
chr3:46901304-46900915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 17
               

               
Conread position:
               
132-520
               

               
Cow position:
               
chr3:49231111-49230730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
181, 29
               

               
Conread position:
               
132-540
               

               
Cow position:
               
chr3:49383062-49382647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr3:4481053-4480857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
164, 128
               

               
Conread position:
               
133-413
               

               
Cow position:
               
chr3:26874700-26874421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
165, 24
               

               
Conread position:
               
133-433
               

               
Cow position:
               
chr3:66883834-66884130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 24
               

               
Conread position:
               
133-440
               

               
Cow position:
               
chr3:55712551-55712234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 312
               

               
Conread position:
               
133-484
               

               
Cow position:
               
chr3:55835709-55836075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 256
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr3:2680622-2680248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 16
               

               
Conread position:
               
133-510
               

               
Cow position:
               
chr3:14263503-14263120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 48
               

               
Conread position:
               
133-510
               

               
Cow position:
               
chr3:55010055-55010427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
133-517
               

               
Cow position:
               
chr3:60597653-60597271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
134-381
               

               
Cow position:
               
chr3:53209910-53210159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 124
               

               
Conread position:
               
134-511
               

               
Cow position:
               
chr3:14465597-14465977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 29
               

               
Conread position:
               
135-299
               

               
Cow position:
               
chr3:68059424-68059260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
135-422
               

               
Cow position:
               
chr3:3913333-3913629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
108, 101
               

               
Conread position:
               
135-422
               

               
Cow position:
               
chr3:81506999-81507290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 181
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr3:43571857-43571492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
114, 230
               

               
Conread position:
               
136-510
               

               
Cow position:
               
chr3:27532546-27532934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
136-521
               

               
Cow position:
               
chr3:67704652-67704254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
137-398
               

               
Cow position:
               
chr3:32457300-32457044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
137-496
               

               
Cow position:
               
chr3:61144201-61143835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
190, 103
               

               
Conread position:
               
137-510
               

               
Cow position:
               
chr3:79591784-79592161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
191, 145
               

               
Conread position:
               
138-351
               

               
Cow position:
               
chr3:33693925-33693709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
181, 139
               

               
Conread position:
               
138-508
               

               
Cow position:
               
chr3:82461285-82460913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 163
               

               
Conread position:
               
138-509
               

               
Cow position:
               
chr3:57624570-57624192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 163
               

               
Conread position:
               
140-298
               

               
Cow position:
               
chr3:56948984-56949142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-430
               

               
Cow position:
               
chr3:75687334-75687625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 34
               

               
Conread position:
               
140-475
               

               
Cow position:
               
chr3:27940039-27940365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
293, 96
               

               
Conread position:
               
140-508
               

               
Cow position:
               
chr3:56059917-56059537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 244
               

               
Conread position:
               
140-540
               

               
Cow position:
               
chr3:80053440-80053839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 22
               

               
Conread position:
               
141-353
               

               
Cow position:
               
chr3:27727727-27727940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
141-433
               

               
Cow position:
               
chr3:15506552-15506262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
141-445
               

               
Cow position:
               
chr3:57760601-57760293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 151
               

               
Conread position:
               
141-497
               

               
Cow position:
               
chr3:2008353-2008010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chr3:4050296-4049941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 111
               

               
Conread position:
               
141-526
               

               
Cow position:
               
chr3:73442993-73443378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 61
               

               
Conread position:
               
142-404
               

               
Cow position:
               
chr3:74243094-74242835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
142-485
               

               
Cow position:
               
chr3:3738583-3738237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
80, 84
               

               
Conread position:
               
142-510
               

               
Cow position:
               
chr3:79292929-79292562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
144-510
               

               
Cow position:
               
chr3:42423228-42423603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 79
               

               
Conread position:
               
144-518
               

               
Cow position:
               
chr3:8717334-8716967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
145-433
               

               
Cow position:
               
chr3:14599035-14598761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
145-538
               

               
Cow position:
               
chr3:81470997-81471401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 160
               

               
Conread position:
               
146-373
               

               
Cow position:
               
chr3:74846612-74846840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
146-510
               

               
Cow position:
               
chr3:34271012-34270659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
147-330
               

               
Cow position:
               
chr3:53703867-53704051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
147-360
               

               
Cow position:
               
chr3:72503799-72504016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
147-428
               

               
Cow position:
               
chr3:79092292-79092579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 167
               

               
Conread position:
               
147-484
               

               
Cow position:
               
chr3:116287-115961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 145
               

               
Conread position:
               
147-492
               

               
Cow position:
               
chr3:18725546-18725888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
147-493
               

               
Cow position:
               
chr3:56476779-56476427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 239
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr3:64172538-64172175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr3:82056022-82056387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
180, 89
               

               
Conread position:
               
147-510
               

               
Cow position:
               
chr3:79148188-79148548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
240, 137
               

               
Conread position:
               
147-521
               

               
Cow position:
               
chr3:14626053-14626436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 169
               

               
Conread position:
               
147-539
               

               
Cow position:
               
chr3:51604518-51604911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
238, 101
               

               
Conread position:
               
148-440
               

               
Cow position:
               
chr3:26960492-26960786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
112, 89
               

               
Conread position:
               
148-510
               

               
Cow position:
               
chr3:2216464-2216088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 88
               

               
Conread position:
               
148-510
               

               
Cow position:
               
chr3:72676188-72675815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
148-540
               

               
Cow position:
               
chr3:52017867-52017455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
149-440
               

               
Cow position:
               
chr3:53094836-53095131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
145, 159
               

               
Conread position:
               
149-496
               

               
Cow position:
               
chr3:23448042-23448389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 169
               

               
Conread position:
               
149-508
               

               
Cow position:
               
chr3:59451699-59451325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 221
               

               
Conread position:
               
149-521
               

               
Cow position:
               
chr3:62826522-62826909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
150-450
               

               
Cow position:
               
chr3:2198977-2198675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
150-510
               

               
Cow position:
               
chr3:59208888-59208542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
150-521
               

               
Cow position:
               
chr3:66292083-66292464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
150-540
               

               
Cow position:
               
chr3:55271951-55272345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 236
               

               
Conread position:
               
151-397
               

               
Cow position:
               
chr3:46541734-46541981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
151-412
               

               
Cow position:
               
chr3:24935457-24935203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
178, 25
               

               
Conread position:
               
151-429
               

               
Cow position:
               
chr3:20677749-20678020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
176, 78
               

               
Conread position:
               
151-486
               

               
Cow position:
               
chr3:58767356-58767031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
148, 189
               

               
Conread position:
               
151-505
               

               
Cow position:
               
chr3:26218960-26219328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
175, 20
               

               
Conread position:
               
151-505
               

               
Cow position:
               
chr3:38691314-38691672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 6
               

               
Conread position:
               
151-510
               

               
Cow position:
               
chr3:5365770-5365414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 144
               

               
Conread position:
               
151-510
               

               
Cow position:
               
chr3:49650481-49650108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 163
               

               
Conread position:
               
151-510
               

               
Cow position:
               
chr3:70401989-70401631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 81
               

               
Conread position:
               
151-538
               

               
Cow position:
               
chr3:48296791-48296408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
153, 91
               

               
Conread position:
               
151-540
               

               
Cow position:
               
chr3:5100679-5101065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 141
               

               
Conread position:
               
152-411
               

               
Cow position:
               
chr3:35153709-35153454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
152-510
               

               
Cow position:
               
chr3:36671903-36672277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
152-510
               

               
Cow position:
               
chr3:37599336-37599688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
177, 143
               

               
Conread position:
               
152-510
               

               
Cow position:
               
chr3:53113267-53112896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 234
               

               
Conread position:
               
152-510
               

               
Cow position:
               
chr3:59691980-59691632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
152-510
               

               
Cow position:
               
chr3:78945747-78946111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
152-519
               

               
Cow position:
               
chr3:67744536-67744909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
91, 83
               

               
Conread position:
               
153-442
               

               
Cow position:
               
chr3:59883978-59884270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
145, 261
               

               
Conread position:
               
153-515
               

               
Cow position:
               
chr3:15228732-15229096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 139
               

               
Conread position:
               
153-539
               

               
Cow position:
               
chr3:27290031-27289635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 162
               

               
Conread position:
               
154-303
               

               
Cow position:
               
chr3:51349913-51349764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
154-415
               

               
Cow position:
               
chr3:31850285-31850541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
155-537
               

               
Cow position:
               
chr3:38347279-38346903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 85
               

               
Conread position:
               
156-354
               

               
Cow position:
               
chr3:63177572-63177367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
157-298
               

               
Cow position:
               
chr3:41652463-41652322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
157-330
               

               
Cow position:
               
chr3:83928333-83928163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 101
               

               
Conread position:
               
157-427
               

               
Cow position:
               
chr3:84596878-84597143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
157-508
               

               
Cow position:
               
chr3:525433-525084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 111
               

               
Conread position:
               
157-508
               

               
Cow position:
               
chr3:6873165-6873515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 77
               

               
Conread position:
               
157-508
               

               
Cow position:
               
chr3:24352947-24352611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
149, 74
               

               
Conread position:
               
157-509
               

               
Cow position:
               
chr3:17895935-17895583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
157-509
               

               
Cow position:
               
chr3:83815701-83816064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 49
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chr3:72516-72143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chr3:18459441-18459792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 121
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chr3:35852384-35852739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chr3:70896139-70895774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 143
               

               
Conread position:
               
158-371
               

               
Cow position:
               
chr3:1785159-1785370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
169, 142
               

               
Conread position:
               
158-434
               

               
Cow position:
               
chr3:34669647-34669918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 94
               

               
Conread position:
               
158-497
               

               
Cow position:
               
chr3:59630427-59630758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
169, 77
               

               
Conread position:
               
158-498
               

               
Cow position:
               
chr3:8733273-8733596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
189, 69
               

               
Conread position:
               
158-510
               

               
Cow position:
               
chr3:26920996-26920625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
158-522
               

               
Cow position:
               
chr3:59101913-59101550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 83
               

               
Conread position:
               
159-364
               

               
Cow position:
               
chr3:6403504-6403300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
170, 126
               

               
Conread position:
               
159-534
               

               
Cow position:
               
chr3:28908118-28908489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 146
               

               
Conread position:
               
160-501
               

               
Cow position:
               
chr3:20471281-20471622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
160-507
               

               
Cow position:
               
chr3:54862335-54862693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
143, 14
               

               
Conread position:
               
160-510
               

               
Cow position:
               
chr3:51012469-51012805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
275, 102
               

               
Conread position:
               
160-522
               

               
Cow position:
               
chr3:73764116-73764478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
161-429
               

               
Cow position:
               
chr3:74502242-74502507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
161-490
               

               
Cow position:
               
chr3:25755103-25754784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
161-509
               

               
Cow position:
               
chr3:33327792-33327436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
145, 124
               

               
Conread position:
               
161-510
               

               
Cow position:
               
chr3:66707984-66708344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
161-536
               

               
Cow position:
               
chr3:24872787-24872441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
163-411
               

               
Cow position:
               
chr3:55109532-55109782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
134, 225
               

               
Conread position:
               
163-425
               

               
Cow position:
               
chr3:26982138-26981883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
166, 11
               

               
Conread position:
               
163-452
               

               
Cow position:
               
chr3:83845993-83845692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
140, 11
               

               
Conread position:
               
163-497
               

               
Cow position:
               
chr3:5097288-5096945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 140
               

               
Conread position:
               
163-498
               

               
Cow position:
               
chr3:5374409-5374073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
167, 78
               

               
Conread position:
               
163-505
               

               
Cow position:
               
chr3:53739104-53739458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 138
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr3:26066082-26065729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr3:29887339-29887696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr3:55085088-55085456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr3:59799329-59798982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chr3:74533430-74533076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 138
               

               
Conread position:
               
163-512
               

               
Cow position:
               
chr3:45647761-45647401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
139, 190
               

               
Conread position:
               
163-517
               

               
Cow position:
               
chr3:19006738-19006385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
103, 83
               

               
Conread position:
               
165-497
               

               
Cow position:
               
chr3:10347434-10347096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
165-517
               

               
Cow position:
               
chr3:56298-56651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
165-537
               

               
Cow position:
               
chr3:58968824-58969193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 136
               

               
Conread position:
               
166-327
               

               
Cow position:
               
chr3:81277390-81277552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
167-448
               

               
Cow position:
               
chr3:15903884-15904179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
167-480
               

               
Cow position:
               
chr3:22232577-22232885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
167-510
               

               
Cow position:
               
chr3:45534219-45534571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
167-517
               

               
Cow position:
               
chr3:31771756-31771418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
168-467
               

               
Cow position:
               
chr3:76015368-76015070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
169-440
               

               
Cow position:
               
chr3:3638253-3637991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
160, 66
               

               
Conread position:
               
169-510
               

               
Cow position:
               
chr3:68582925-68583274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
170-497
               

               
Cow position:
               
chr3:72131224-72131556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
171-440
               

               
Cow position:
               
chr3:27696906-27697174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
161, 25
               

               
Conread position:
               
171-520
               

               
Cow position:
               
chr3:52147578-52147961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 214
               

               
Conread position:
               
173-514
               

               
Cow position:
               
chr3:20437585-20437921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
156, 112
               

               
Conread position:
               
175-493
               

               
Cow position:
               
chr3:23091907-23092238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
175-521
               

               
Cow position:
               
chr3:26553646-26553994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
67, 60
               

               
Conread position:
               
176-430
               

               
Cow position:
               
chr3:7940489-7940742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
176-470
               

               
Cow position:
               
chr3:49139981-49140265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
176-484
               

               
Cow position:
               
chr3:23444820-23445136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 166
               

               
Conread position:
               
176-500
               

               
Cow position:
               
chr3:44861245-44861570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
182, 5
               

               
Conread position:
               
176-510
               

               
Cow position:
               
chr3:53588317-53588662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 5
               

               
Conread position:
               
177-450
               

               
Cow position:
               
chr3:78896714-78896444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
152, 128
               

               
Conread position:
               
177-510
               

               
Cow position:
               
chr3:24939158-24939497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 125
               

               
Conread position:
               
177-510
               

               
Cow position:
               
chr3:80202672-80202335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
237, 130
               

               
Conread position:
               
178-513
               

               
Cow position:
               
chr3:81277627-81277979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
180-522
               

               
Cow position:
               
chr3:73759453-73759799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
142, 46
               

               
Conread position:
               
181-372
               

               
Cow position:
               
chr3:73237259-73237065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
119, 132
               

               
Conread position:
               
181-510
               

               
Cow position:
               
chr3:75711369-75711047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
139, 107
               

               
Conread position:
               
181-511
               

               
Cow position:
               
chr3:15684859-15685183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
183-489
               

               
Cow position:
               
chr3:11712026-11711702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
183-497
               

               
Cow position:
               
chr3:12674982-12675295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
236, 116
               

               
Conread position:
               
184-482
               

               
Cow position:
               
chr3:34556180-34556471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
185-487
               

               
Cow position:
               
chr3:74878530-74878838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 115
               

               
Conread position:
               
185-510
               

               
Cow position:
               
chr3:22089218-22089554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
185-510
               

               
Cow position:
               
chr3:34095902-34096226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
143, 99
               

               
Conread position:
               
185-510
               

               
Cow position:
               
chr3:61539860-61539524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 37
               

               
Conread position:
               
185-540
               

               
Cow position:
               
chr3:75727523-75727894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
186-490
               

               
Cow position:
               
chr3:34937902-34937589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
187-521
               

               
Cow position:
               
chr3:66609787-66610124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
188-497
               

               
Cow position:
               
chr3:39171430-39171743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
188-504
               

               
Cow position:
               
chr3:46350727-46350394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
190-508
               

               
Cow position:
               
chr3:36100891-36100558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
191-473
               

               
Cow position:
               
chr3:31046899-31047184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
142, 40
               

               
Conread position:
               
191-493
               

               
Cow position:
               
chr3:14632930-14633242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
116, 170
               

               
Conread position:
               
191-515
               

               
Cow position:
               
chr3:72019169-72018843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 20
               

               
Conread position:
               
192-423
               

               
Cow position:
               
chr3:81359055-81359292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 111
               

               
Conread position:
               
192-505
               

               
Cow position:
               
chr3:80818769-80818462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
192-540
               

               
Cow position:
               
chr3:65800637-65800290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
193-510
               

               
Cow position:
               
chr3:4457020-4457348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
83, 121
               

               
Conread position:
               
195-521
               

               
Cow position:
               
chr3:71161848-71161508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
102, 41
               

               
Conread position:
               
195-521
               

               
Cow position:
               
chr3:71430155-71430497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
199-463
               

               
Cow position:
               
chr3:56301313-56301573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
202-403
               

               
Cow position:
               
chr3:2850857-2851054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
131, 7
               

               
Conread position:
               
202-493
               

               
Cow position:
               
chr3:22820613-22820314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
204-493
               

               
Cow position:
               
chr3:61171467-61171765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
204-510
               

               
Cow position:
               
chr3:19708068-19708371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
122, 37
               

               
Conread position:
               
205-537
               

               
Cow position:
               
chr3:66375358-66375023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
208-486
               

               
Cow position:
               
chr3:63332854-63332562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 89
               

               
Conread position:
               
211-400
               

               
Cow position:
               
chr3:32183985-32184177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 171
               

               
Conread position:
               
211-440
               

               
Cow position:
               
chr3:35005809-35005586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
118, 87
               

               
Conread position:
               
211-510
               

               
Cow position:
               
chr3:43528199-43528509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
41, 157
               

               
Conread position:
               
212-510
               

               
Cow position:
               
chr3:13512718-13513009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
175, 50
               

               
Conread position:
               
213-510
               

               
Cow position:
               
chr3:33698762-33698449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
213-537
               

               
Cow position:
               
chr3:69849480-69849802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
214-440
               

               
Cow position:
               
chr3:70632051-70631823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
214-540
               

               
Cow position:
               
chr3:42178183-42177855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
216-501
               

               
Cow position:
               
chr3:60892653-60892369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
219-521
               

               
Cow position:
               
chr3:76172644-76172948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
222-510
               

               
Cow position:
               
chr3:45524289-45523992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
77, 92
               

               
Conread position:
               
222-521
               

               
Cow position:
               
chr3:69961695-69961997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
238-505
               

               
Cow position:
               
chr3:17450934-17451201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr3:54960195-54959920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
239-532
               

               
Cow position:
               
chr3:49793401-49793118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 93
               

               
Conread position:
               
240-440
               

               
Cow position:
               
chr3:21693955-21693750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 200
               

               
Conread position:
               
241-484
               

               
Cow position:
               
chr3:55106436-55106689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
241-516
               

               
Cow position:
               
chr3:84000616-84000334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 64
               

               
Conread position:
               
241-518
               

               
Cow position:
               
chr3:5850926-5851207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
241-540
               

               
Cow position:
               
chr3:49218311-49218612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
242-452
               

               
Cow position:
               
chr3:39328400-39328188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
242-510
               

               
Cow position:
               
chr3:16157676-16157409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
146, 10
               

               
Conread position:
               
243-513
               

               
Cow position:
               
chr3:49731639-49731912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 9
               

               
Conread position:
               
245-488
               

               
Cow position:
               
chr3:62790007-62790257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
246-433
               

               
Cow position:
               
chr3:15859670-15859856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
246-484
               

               
Cow position:
               
chr3:83201529-83201774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 6
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr3:48923525-48923771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 6
               

               
Conread position:
               
246-500
               

               
Cow position:
               
chr3:59515100-59514849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
246-510
               

               
Cow position:
               
chr3:44622890-44623169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
248-510
               

               
Cow position:
               
chr3:57553852-57554119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
49, 139
               

               
Conread position:
               
252-538
               

               
Cow position:
               
chr3:47284827-47284537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 5
               

               
Conread position:
               
254-433
               

               
Cow position:
               
chr3:22900005-22900178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
254-433
               

               
Cow position:
               
chr3:38078445-38078276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
254-444
               

               
Cow position:
               
chr3:59885383-59885180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
254-452
               

               
Cow position:
               
chr3:61024311-61024511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
254-484
               

               
Cow position:
               
chr3:59271533-59271305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 133
               

               
Conread position:
               
254-487
               

               
Cow position:
               
chr3:44534769-44535016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
254-496
               

               
Cow position:
               
chr3:364222-364477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
254-497
               

               
Cow position:
               
chr3:73590004-73590256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 138
               

               
Conread position:
               
254-508
               

               
Cow position:
               
chr3:24304925-24305175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr3:27544344-27544601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr3:28675977-28675717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr3:48269855-48269591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr3:63860899-63861173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
254-536
               

               
Cow position:
               
chr3:3164505-3164797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
254-540
               

               
Cow position:
               
chr3:27286219-27285920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
254-540
               

               
Cow position:
               
chr3:78201258-78200962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
254-540
               

               
Cow position:
               
chr3:81940248-81939949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
255-412
               

               
Cow position:
               
chr3:53192437-53192590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
255-452
               

               
Cow position:
               
chr3:25060069-25059861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 135
               

               
Conread position:
               
255-508
               

               
Cow position:
               
chr3:1133088-1133365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
255-510
               

               
Cow position:
               
chr3:4332354-4332091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 45
               

               
Conread position:
               
255-510
               

               
Cow position:
               
chr3:5899814-5899554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
74, 133
               

               
Conread position:
               
255-510
               

               
Cow position:
               
chr3:42483897-42483628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
255-514
               

               
Cow position:
               
chr3:51543077-51542808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
255-517
               

               
Cow position:
               
chr3:70333492-70333755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
132, 37
               

               
Conread position:
               
255-521
               

               
Cow position:
               
chr3:8147678-8147949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
255-521
               

               
Cow position:
               
chr3:48530625-48530352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chr3:30358644-30358939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
57, 45
               

               
Conread position:
               
256-505
               

               
Cow position:
               
chr3:30701298-30701055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 131
               

               
Conread position:
               
256-510
               

               
Cow position:
               
chr3:78894337-78894586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 49
               

               
Conread position:
               
256-510
               

               
Cow position:
               
chr3:83934496-83934242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
256-521
               

               
Cow position:
               
chr3:9843575-9843298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
63, 38
               

               
Conread position:
               
257-511
               

               
Cow position:
               
chr3:2903306-2903563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
258-496
               

               
Cow position:
               
chr3:28692443-28692688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
258-510
               

               
Cow position:
               
chr3:17952644-17952384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
258-537
               

               
Cow position:
               
chr3:13118326-13118047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
259-452
               

               
Cow position:
               
chr3:3062553-3062350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
259-490
               

               
Cow position:
               
chr3:31501333-31501095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
259-513
               

               
Cow position:
               
chr3:77496814-77496542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
33, 134
               

               
Conread position:
               
259-521
               

               
Cow position:
               
chr3:4031959-4031686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 130
               

               
Conread position:
               
259-521
               

               
Cow position:
               
chr3:61678690-61678409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 179
               

               
Conread position:
               
259-540
               

               
Cow position:
               
chr3:45313035-45312747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
260-482
               

               
Cow position:
               
chr3:35074669-35074437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
261-432
               

               
Cow position:
               
chr3:7408471-7408299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
261-490
               

               
Cow position:
               
chr3:74409468-74409239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
261-496
               

               
Cow position:
               
chr3:4087176-4087424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
262-433
               

               
Cow position:
               
chr3:73926145-73926318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
262-521
               

               
Cow position:
               
chr3:49787396-49787124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
263-492
               

               
Cow position:
               
chr3:41328424-41328201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
263-496
               

               
Cow position:
               
chr3:11026900-11026668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
263-502
               

               
Cow position:
               
chr3:16362754-16363003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 47
               

               
Conread position:
               
263-521
               

               
Cow position:
               
chr3:11020099-11019832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chr3:57789613-57789386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr3:49455215-49454969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
267-532
               

               
Cow position:
               
chr3:59701986-59701717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
271-493
               

               
Cow position:
               
chr3:52650555-52650788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
272-510
               

               
Cow position:
               
chr3:58951587-58951349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
272-514
               

               
Cow position:
               
chr3:61190952-61191193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
273-452
               

               
Cow position:
               
chr3:65381121-65380946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
273-484
               

               
Cow position:
               
chr3:75057159-75057365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
273-496
               

               
Cow position:
               
chr3:35283118-35283356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
274-508
               

               
Cow position:
               
chr3:18763866-18763624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
279-478
               

               
Cow position:
               
chr3:80922543-80922328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
281-521
               

               
Cow position:
               
chr3:68342289-68342536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
282-501
               

               
Cow position:
               
chr3:20155797-20155567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 225
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr3:12287189-12286965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
285-510
               

               
Cow position:
               
chr3:55460542-55460773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
285-538
               

               
Cow position:
               
chr3:41367025-41367287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
286-508
               

               
Cow position:
               
chr3:54770967-54770734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
286-509
               

               
Cow position:
               
chr3:74699433-74699666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
286-521
               

               
Cow position:
               
chr3:15057647-15057884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
288-482
               

               
Cow position:
               
chr3:77006447-77006261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
288-490
               

               
Cow position:
               
chr3:82359999-82359793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
288-518
               

               
Cow position:
               
chr3:29807422-29807182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
288-540
               

               
Cow position:
               
chr3:11333354-11333619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
289-497
               

               
Cow position:
               
chr3:45307891-45307675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
289-498
               

               
Cow position:
               
chr3:13577232-13577446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
289-510
               

               
Cow position:
               
chr3:42588315-42588077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
290-497
               

               
Cow position:
               
chr3:14625438-14625647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
290-497
               

               
Cow position:
               
chr3:28938952-28939173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
290-510
               

               
Cow position:
               
chr3:82657132-82657357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
291-497
               

               
Cow position:
               
chr3:56161263-56161048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
291-510
               

               
Cow position:
               
chr3:70467869-70468075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
292-490
               

               
Cow position:
               
chr3:61361358-61361150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chr3:31903160-31903380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
294-510
               

               
Cow position:
               
chr3:6853553-6853772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
296-508
               

               
Cow position:
               
chr3:25691704-25691479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 116
               

               
Conread position:
               
296-510
               

               
Cow position:
               
chr3:5416277-5416503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
297-498
               

               
Cow position:
               
chr3:15192513-15192303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr3:15661752-15661973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
298-510
               

               
Cow position:
               
chr3:56704596-56704809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
299-508
               

               
Cow position:
               
chr3:58383913-58383698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
299-509
               

               
Cow position:
               
chr3:23277596-23277816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
302-425
               

               
Cow position:
               
chr3:16891242-16891117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chr3:23945042-23944825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chr3:42461641-42461428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chr3:79208054-79208275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
302-513
               

               
Cow position:
               
chr3:77227266-77227043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
305-452
               

               
Cow position:
               
chr3:75535049-75534900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
305-476
               

               
Cow position:
               
chr3:4861624-4861451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 27
               

               
Conread position:
               
305-510
               

               
Cow position:
               
chr3:42367561-42367761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
305-534
               

               
Cow position:
               
chr3:22872106-22872349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
305-538
               

               
Cow position:
               
chr3:2483387-2483152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
306-501
               

               
Cow position:
               
chr3:8604074-8604278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
306-503
               

               
Cow position:
               
chr3:48578771-48578577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
110, 72
               

               
Conread position:
               
306-507
               

               
Cow position:
               
chr3:33632952-33633156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
308-510
               

               
Cow position:
               
chr3:66978774-66978571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
309-540
               

               
Cow position:
               
chr3:522643-522420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
311-510
               

               
Cow position:
               
chr3:83921132-83920926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
312-508
               

               
Cow position:
               
chr3:12324008-12323795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
312-508
               

               
Cow position:
               
chr3:22171121-22170919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
315-513
               

               
Cow position:
               
chr3:19198601-19198406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
318-475
               

               
Cow position:
               
chr3:29334583-29334751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
318-506
               

               
Cow position:
               
chr3:55971154-55970957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
319-493
               

               
Cow position:
               
chr3:23270021-23269847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
319-521
               

               
Cow position:
               
chr3:61467530-61467323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
323-518
               

               
Cow position:
               
chr3:51255707-51255504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
324-508
               

               
Cow position:
               
chr3:16004072-16004256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
116, 11
               

               
Conread position:
               
326-508
               

               
Cow position:
               
chr3:11640350-11640164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
326-510
               

               
Cow position:
               
chr3:53904096-53903914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
327-521
               

               
Cow position:
               
chr3:51609737-51609534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
106, 194
               

               
Conread position:
               
334-473
               

               
Cow position:
               
chr3:14717719-14717571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
334-508
               

               
Cow position:
               
chr3:16809876-16810061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
334-510
               

               
Cow position:
               
chr3:48371044-48370859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
334-520
               

               
Cow position:
               
chr3:36656860-36657055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
334-521
               

               
Cow position:
               
chr3:62623740-62623919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 43
               

               
Conread position:
               
335-486
               

               
Cow position:
               
chr3:26894569-26894413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
335-504
               

               
Cow position:
               
chr3:34392189-34392362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
335-505
               

               
Cow position:
               
chr3:21341054-21341231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
335-510
               

               
Cow position:
               
chr3:77276499-77276676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
335-540
               

               
Cow position:
               
chr3:65020244-65020027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
336-513
               

               
Cow position:
               
chr3:18607279-18607093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
337-505
               

               
Cow position:
               
chr3:15080840-15081006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
337-518
               

               
Cow position:
               
chr3:53222733-53222922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
338-510
               

               
Cow position:
               
chr3:83369222-83369050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
341-521
               

               
Cow position:
               
chr3:23416967-23417147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
342-513
               

               
Cow position:
               
chr3:9116804-9116632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
343-510
               

               
Cow position:
               
chr3:3096445-3096619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
344-524
               

               
Cow position:
               
chr3:61262703-61262515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
347-510
               

               
Cow position:
               
chr3:14280743-14280572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
347-521
               

               
Cow position:
               
chr3:83988383-83988195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
347-540
               

               
Cow position:
               
chr3:24639489-24639285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
349-485
               

               
Cow position:
               
chr3:67829799-67829938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
349-508
               

               
Cow position:
               
chr3:75164016-75164180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
349-519
               

               
Cow position:
               
chr3:33693544-33693368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
349-521
               

               
Cow position:
               
chr3:58158569-58158750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
352-496
               

               
Cow position:
               
chr3:84368481-84368628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
352-538
               

               
Cow position:
               
chr3:22907940-22908135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
355-510
               

               
Cow position:
               
chr3:6403187-6403025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
359-486
               

               
Cow position:
               
chr3:75050175-75050303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
359-510
               

               
Cow position:
               
chr3:68514675-68514821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
361-509
               

               
Cow position:
               
chr3:12670814-12670960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
362-514
               

               
Cow position:
               
chr3:8901300-8901146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
374-510
               

               
Cow position:
               
chr3:48900632-48900774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 94
               

               
Conread position:
               
378-538
               

               
Cow position:
               
chr3:57022437-57022274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
386-500
               

               
Cow position:
               
chr3:9638736-9638855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
408-510
               

               
Cow position:
               
chr3:76614474-76614370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               
Show alignments to all cow chromosomes.