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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_013818.5
        

               
Conread position:
               
1-526
               

               
Cow position:
               
chrX:11717494-11718021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chrX:28068136-28067870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chrX:39642345-39642559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
10-294
               

               
Cow position:
               
chrX:16836004-16836285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
16-276
               

               
Cow position:
               
chrX:17524103-17524366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
17-508
               

               
Cow position:
               
chrX:20339616-20340111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
19-522
               

               
Cow position:
               
chrX:15231377-15231889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
21-539
               

               
Cow position:
               
chrX:24365547-24366083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
23-315
               

               
Cow position:
               
chrX:32574586-32574293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
269, 50
               

               
Conread position:
               
23-521
               

               
Cow position:
               
chrX:38964369-38963873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 21
               

               
Conread position:
               
25-540
               

               
Cow position:
               
chrX:30133056-30133579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 43
               

               
Conread position:
               
30-227
               

               
Cow position:
               
chrX:41215594-41215390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
30-510
               

               
Cow position:
               
chrX:34454926-34454447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
34-267
               

               
Cow position:
               
chrX:2314357-2314591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
34-512
               

               
Cow position:
               
chrX:12979577-12980055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 24
               

               
Conread position:
               
39-220
               

               
Cow position:
               
chrX:4486767-4486949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
47-538
               

               
Cow position:
               
chrX:44055052-44054551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 232
               

               
Conread position:
               
48-408
               

               
Cow position:
               
chrX:42927583-42927933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
279, 25
               

               
Conread position:
               
48-510
               

               
Cow position:
               
chrX:46072566-46073044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
50-433
               

               
Cow position:
               
chrX:34314267-34313894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
51-377
               

               
Cow position:
               
chrX:29050488-29050163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
53-521
               

               
Cow position:
               
chrX:6690025-6690484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
54-273
               

               
Cow position:
               
chrX:32877139-32877353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
54-342
               

               
Cow position:
               
chrX:22392748-22393035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
54-445
               

               
Cow position:
               
chrX:45110895-45110509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
54-460
               

               
Cow position:
               
chrX:35885488-35885902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 93
               

               
Conread position:
               
54-470
               

               
Cow position:
               
chrX:32821280-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
55-330
               

               
Cow position:
               
chrX:6599533-6599818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
55-330
               

               
Cow position:
               
chrX:48474149-48473873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
55-339
               

               
Cow position:
               
chrX:28940484-28940201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
55-354
               

               
Cow position:
               
chrX:2674715-2675018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 190
               

               
Conread position:
               
55-366
               

               
Cow position:
               
chrX:38321139-38321460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
55-372
               

               
Cow position:
               
chrX:36866412-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
55-385
               

               
Cow position:
               
chrX:13147217-13146891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
55-399
               

               
Cow position:
               
chrX:24457306-24457647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 238
               

               
Conread position:
               
55-410
               

               
Cow position:
               
chrX:24332020-24331662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 234
               

               
Conread position:
               
55-430
               

               
Cow position:
               
chrX:41871298-41870937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
242, 84
               

               
Conread position:
               
55-490
               

               
Cow position:
               
chrX:36356346-36355921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
55-496
               

               
Cow position:
               
chrX:27175239-27174786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chrX:1466402-1465967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
55, 18
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chrX:4268825-4269290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chrX:6544484-6544034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
55-510
               

               
Cow position:
               
chrX:27446927-27446466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chrX:7179135-7178658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 141
               

               
Conread position:
               
55-540
               

               
Cow position:
               
chrX:47588955-47588446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
56-250
               

               
Cow position:
               
chrX:29451301-29451506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
56-329
               

               
Cow position:
               
chrX:43151914-43152190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
56-390
               

               
Cow position:
               
chrX:34836831-34837150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
57-460
               

               
Cow position:
               
chrX:22387000-22387420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
57-518
               

               
Cow position:
               
chrX:37072623-37072176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
58-227
               

               
Cow position:
               
chrX:41435300-41435481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
58-234
               

               
Cow position:
               
chrX:26881839-26882019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
58-275
               

               
Cow position:
               
chrX:19018589-19018811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
58-330
               

               
Cow position:
               
chrX:24749325-24749053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
58-330
               

               
Cow position:
               
chrX:48574884-48574612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
58-366
               

               
Cow position:
               
chrX:1087910-1088209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
65, 79
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chrX:42855701-42855309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 369
               

               
Conread position:
               
58-489
               

               
Cow position:
               
chrX:1499891-1499468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
58-508
               

               
Cow position:
               
chrX:22482452-22482909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chrX:12290953-12290513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chrX:22822295-22821825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 244
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chrX:32019894-32020344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 213
               

               
Conread position:
               
58-510
               

               
Cow position:
               
chrX:44192207-44192665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
59-209
               

               
Cow position:
               
chrX:1996212-1996366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
59-227
               

               
Cow position:
               
chrX:40556227-40556391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
59-258
               

               
Cow position:
               
chrX:37751874-37752069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
59-330
               

               
Cow position:
               
chrX:36367695-36367976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 242
               

               
Conread position:
               
59-406
               

               
Cow position:
               
chrX:34222948-34222598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
59-510
               

               
Cow position:
               
chrX:25035141-25035609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 247
               

               
Conread position:
               
59-522
               

               
Cow position:
               
chrX:42246944-42247418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 319
               

               
Conread position:
               
60-294
               

               
Cow position:
               
chrX:2936187-2935958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
60-376
               

               
Cow position:
               
chrX:16575346-16575040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
269, 65
               

               
Conread position:
               
60-508
               

               
Cow position:
               
chrX:3654839-3654384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
60-525
               

               
Cow position:
               
chrX:37780877-37781349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
60-538
               

               
Cow position:
               
chrX:34441217-34441701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 209
               

               
Conread position:
               
63-233
               

               
Cow position:
               
chrX:1960192-1960363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
63-248
               

               
Cow position:
               
chrX:8327138-8326951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 173
               

               
Conread position:
               
63-265
               

               
Cow position:
               
chrX:4092159-4091954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
63-290
               

               
Cow position:
               
chrX:1122314-1122538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
63-337
               

               
Cow position:
               
chrX:27074818-27075092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
63-393
               

               
Cow position:
               
chrX:10516487-10516157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 295
               

               
Conread position:
               
63-407
               

               
Cow position:
               
chrX:9650795-9651138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
63-426
               

               
Cow position:
               
chrX:40685096-40685463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 89
               

               
Conread position:
               
63-452
               

               
Cow position:
               
chrX:45875622-45875239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
63-497
               

               
Cow position:
               
chrX:14973524-14973944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 76
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chrX:15146968-15147408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
63-510
               

               
Cow position:
               
chrX:35269089-35268668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
388, 40
               

               
Conread position:
               
64-234
               

               
Cow position:
               
chrX:15100210-15100044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
64-297
               

               
Cow position:
               
chrX:47345562-47345324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
64-510
               

               
Cow position:
               
chrX:23513773-23514240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
64-520
               

               
Cow position:
               
chrX:22075027-22074565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
69-460
               

               
Cow position:
               
chrX:6407772-6407376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
69-491
               

               
Cow position:
               
chrX:29544660-29545083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
69-508
               

               
Cow position:
               
chrX:29601602-29602053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
70-210
               

               
Cow position:
               
chrX:19356690-19356548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-215
               

               
Cow position:
               
chrX:35509454-35509599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 75
               

               
Conread position:
               
70-219
               

               
Cow position:
               
chrX:11670913-11670762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-266
               

               
Cow position:
               
chrX:46910034-46909844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
70-276
               

               
Cow position:
               
chrX:35285400-35285192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
70-283
               

               
Cow position:
               
chrX:4327956-4328171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
70-293
               

               
Cow position:
               
chrX:24170499-24170727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 137
               

               
Conread position:
               
70-302
               

               
Cow position:
               
chrX:26979565-26979797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
70-309
               

               
Cow position:
               
chrX:43008836-43008595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
50, 237
               

               
Conread position:
               
70-330
               

               
Cow position:
               
chrX:44954720-44954458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
70-381
               

               
Cow position:
               
chrX:33654617-33654929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
53, 217
               

               
Conread position:
               
70-418
               

               
Cow position:
               
chrX:4512471-4512110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
70-419
               

               
Cow position:
               
chrX:46546647-46547001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 283
               

               
Conread position:
               
70-429
               

               
Cow position:
               
chrX:41027386-41027022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 320
               

               
Conread position:
               
70-505
               

               
Cow position:
               
chrX:11633908-11633461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
70-510
               

               
Cow position:
               
chrX:27705813-27705371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 210
               

               
Conread position:
               
70-510
               

               
Cow position:
               
chrX:40826524-40826969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
70-517
               

               
Cow position:
               
chrX:31729663-31729226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
70-521
               

               
Cow position:
               
chrX:15546107-15545661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
71-278
               

               
Cow position:
               
chrX:31480191-31479988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
71-433
               

               
Cow position:
               
chrX:29723976-29723602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
71-509
               

               
Cow position:
               
chrX:20887424-20887865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
71-510
               

               
Cow position:
               
chrX:23563565-23564019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 243
               

               
Conread position:
               
71-510
               

               
Cow position:
               
chrX:33855001-33855455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
71-533
               

               
Cow position:
               
chrX:8869179-8869657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
71-540
               

               
Cow position:
               
chrX:14883732-14884219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
72-309
               

               
Cow position:
               
chrX:3806902-3806670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
54, 65
               

               
Conread position:
               
73-227
               

               
Cow position:
               
chrX:14135898-14135746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
73-234
               

               
Cow position:
               
chrX:42875432-42875273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
73-267
               

               
Cow position:
               
chrX:32867093-32866903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
73-278
               

               
Cow position:
               
chrX:20583883-20583683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
73-290
               

               
Cow position:
               
chrX:32942857-32943071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chrX:40531803-40532078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 251
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chrX:42894145-42893883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
170, 73
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chrX:45391489-45391748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 199
               

               
Conread position:
               
73-330
               

               
Cow position:
               
chrX:48558969-48558713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
73-401
               

               
Cow position:
               
chrX:13924084-13923764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
50, 67
               

               
Conread position:
               
73-429
               

               
Cow position:
               
chrX:21986078-21986427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
230, 50
               

               
Conread position:
               
73-448
               

               
Cow position:
               
chrX:45977147-45976765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
73-454
               

               
Cow position:
               
chrX:47279713-47280090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
73-493
               

               
Cow position:
               
chrX:34565508-34565088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 70
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chrX:13177261-13177685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 26
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chrX:13913298-13912859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chrX:40269731-40269256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 252
               

               
Conread position:
               
73-508
               

               
Cow position:
               
chrX:44961978-44961527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 167
               

               
Conread position:
               
73-509
               

               
Cow position:
               
chrX:5637956-5638390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chrX:7351524-7351077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chrX:9201766-9201325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chrX:38218936-38218493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chrX:45598385-45598826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
50, 64
               

               
Conread position:
               
73-510
               

               
Cow position:
               
chrX:45968360-45967940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
169, 26
               

               
Conread position:
               
73-513
               

               
Cow position:
               
chrX:38642465-38642035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 38
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chrX:4996812-4996379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chrX:11656301-11655850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chrX:27431701-27432155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
73-521
               

               
Cow position:
               
chrX:42492298-42492746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
73-522
               

               
Cow position:
               
chrX:9251940-9252415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
73-523
               

               
Cow position:
               
chrX:34412071-34411604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 319
               

               
Conread position:
               
73-537
               

               
Cow position:
               
chrX:45502358-45501895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
73-540
               

               
Cow position:
               
chrX:7722197-7721732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
73-540
               

               
Cow position:
               
chrX:31442616-31443076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
74-237
               

               
Cow position:
               
chrX:6480372-6480538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
74-250
               

               
Cow position:
               
chrX:46068541-46068714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chrX:11325886-11326134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
213, 49
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chrX:19394778-19394518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chrX:45254359-45254617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 240
               

               
Conread position:
               
74-347
               

               
Cow position:
               
chrX:35986038-35985764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
74-374
               

               
Cow position:
               
chrX:40108290-40108587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 235
               

               
Conread position:
               
74-440
               

               
Cow position:
               
chrX:14955544-14955910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
74-493
               

               
Cow position:
               
chrX:38935502-38935076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
74-497
               

               
Cow position:
               
chrX:29542005-29542428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
74-508
               

               
Cow position:
               
chrX:17795202-17794765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
74-508
               

               
Cow position:
               
chrX:45429808-45430237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
74-510
               

               
Cow position:
               
chrX:15485410-15485850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
10, 207
               

               
Conread position:
               
74-510
               

               
Cow position:
               
chrX:38094303-38094747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
74-510
               

               
Cow position:
               
chrX:42380889-42381322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
74-540
               

               
Cow position:
               
chrX:46032505-46032973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
76-380
               

               
Cow position:
               
chrX:6559236-6559532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
76-423
               

               
Cow position:
               
chrX:34315747-34315397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
43, 267
               

               
Conread position:
               
76-491
               

               
Cow position:
               
chrX:41526314-41526727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
76-540
               

               
Cow position:
               
chrX:31436689-31436225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
77-381
               

               
Cow position:
               
chrX:40680834-40680523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
77-452
               

               
Cow position:
               
chrX:37956064-37955675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
78-537
               

               
Cow position:
               
chrX:16762986-16762522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
80-465
               

               
Cow position:
               
chrX:47186110-47186498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
80-493
               

               
Cow position:
               
chrX:32420427-32420013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chrX:4768944-4768528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
80-540
               

               
Cow position:
               
chrX:8900235-8899769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
81-278
               

               
Cow position:
               
chrX:20345666-20345470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 173
               

               
Conread position:
               
81-510
               

               
Cow position:
               
chrX:1615843-1616270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
82-433
               

               
Cow position:
               
chrX:18204252-18204602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
82-510
               

               
Cow position:
               
chrX:21593505-21593061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
82-510
               

               
Cow position:
               
chrX:36198190-36197745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
83-202
               

               
Cow position:
               
chrX:10479963-10479842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-207
               

               
Cow position:
               
chrX:876634-876759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-217
               

               
Cow position:
               
chrX:37717935-37717800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
83-219
               

               
Cow position:
               
chrX:30958941-30958806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-220
               

               
Cow position:
               
chrX:42506733-42506874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-222
               

               
Cow position:
               
chrX:31279714-31279851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
83-223
               

               
Cow position:
               
chrX:16770278-16770136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chrX:51689-51831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chrX:10279088-10278940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chrX:11813287-11813143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chrX:33678257-33678403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chrX:47100381-47100527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chrX:1938226-1938082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chrX:4559947-4559801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chrX:9451554-9451413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chrX:41011103-41010966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chrX:45044667-45044520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chrX:48574141-48574289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chrX:14925486-14925335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chrX:34270774-34270624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chrX:8759836-8759688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chrX:11589154-11589305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chrX:17498536-17498384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chrX:37867467-37867315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chrX:44995713-44995560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-233
               

               
Cow position:
               
chrX:48822129-48822280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
83-234
               

               
Cow position:
               
chrX:10237700-10237852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
83-234
               

               
Cow position:
               
chrX:11653980-11653831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chrX:13347482-13347318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chrX:35681780-35681612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
83-258
               

               
Cow position:
               
chrX:35409965-35409788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 115
               

               
Conread position:
               
83-259
               

               
Cow position:
               
chrX:31983365-31983547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 159
               

               
Conread position:
               
83-260
               

               
Cow position:
               
chrX:27270582-27270410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
83-265
               

               
Cow position:
               
chrX:31986359-31986542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
83-267
               

               
Cow position:
               
chrX:23358904-23359083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
83-269
               

               
Cow position:
               
chrX:16763717-16763901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
83-269
               

               
Cow position:
               
chrX:41453512-41453328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
83-276
               

               
Cow position:
               
chrX:35659007-35658818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
83-280
               

               
Cow position:
               
chrX:41809962-41810153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
83-282
               

               
Cow position:
               
chrX:20957452-20957252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 196
               

               
Conread position:
               
83-283
               

               
Cow position:
               
chrX:35392092-35392282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
83-295
               

               
Cow position:
               
chrX:27668749-27668958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
83-298
               

               
Cow position:
               
chrX:23335762-23335975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
83-298
               

               
Cow position:
               
chrX:29478935-29478721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
83-303
               

               
Cow position:
               
chrX:38587632-38587851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
83-309
               

               
Cow position:
               
chrX:40337124-40336900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
83-312
               

               
Cow position:
               
chrX:35276199-35275969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
83-313
               

               
Cow position:
               
chrX:42449800-42450033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
83-316
               

               
Cow position:
               
chrX:42836394-42836164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
83-325
               

               
Cow position:
               
chrX:35431028-35431273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 96
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chrX:41941836-41941595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
43, 208
               

               
Conread position:
               
83-330
               

               
Cow position:
               
chrX:17956902-17956661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
83-338
               

               
Cow position:
               
chrX:4645701-4645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
83-348
               

               
Cow position:
               
chrX:44339108-44339379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chrX:4109398-4109129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 190
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chrX:13122157-13121869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-356
               

               
Cow position:
               
chrX:7648199-7648464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
83-357
               

               
Cow position:
               
chrX:296605-296331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
83-372
               

               
Cow position:
               
chrX:22115101-22115396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 231
               

               
Conread position:
               
83-372
               

               
Cow position:
               
chrX:41192902-41192629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
214, 55
               

               
Conread position:
               
83-376
               

               
Cow position:
               
chrX:43150644-43150341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
83-390
               

               
Cow position:
               
chrX:12095558-12095870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 226
               

               
Conread position:
               
83-390
               

               
Cow position:
               
chrX:20168768-20168461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
83-395
               

               
Cow position:
               
chrX:21328127-21327802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
83-402
               

               
Cow position:
               
chrX:27261403-27261080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-410
               

               
Cow position:
               
chrX:46291354-46291023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
83-414
               

               
Cow position:
               
chrX:4403531-4403194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 217
               

               
Conread position:
               
83-433
               

               
Cow position:
               
chrX:4278906-4279250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
83-434
               

               
Cow position:
               
chrX:30840754-30840416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
146, 42
               

               
Conread position:
               
83-440
               

               
Cow position:
               
chrX:8917608-8917251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 206
               

               
Conread position:
               
83-440
               

               
Cow position:
               
chrX:25207648-25207988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
83-446
               

               
Cow position:
               
chrX:5679717-5680087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
42, 338
               

               
Conread position:
               
83-447
               

               
Cow position:
               
chrX:27228342-27227966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 214
               

               
Conread position:
               
83-459
               

               
Cow position:
               
chrX:4399331-4398954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
83-473
               

               
Cow position:
               
chrX:161613-161236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 16
               

               
Conread position:
               
83-490
               

               
Cow position:
               
chrX:1175777-1176185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 108
               

               
Conread position:
               
83-493
               

               
Cow position:
               
chrX:3580158-3579739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 224
               

               
Conread position:
               
83-493
               

               
Cow position:
               
chrX:10831268-10831702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
83-493
               

               
Cow position:
               
chrX:41238149-41238571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
246, 41
               

               
Conread position:
               
83-493
               

               
Cow position:
               
chrX:46588033-46587612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chrX:9425549-9425951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 30
               

               
Conread position:
               
83-499
               

               
Cow position:
               
chrX:33001111-33000691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
83-502
               

               
Cow position:
               
chrX:35273585-35273138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
40, 174
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chrX:152118-151681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chrX:5118285-5118705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chrX:36283553-36283125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
83-508
               

               
Cow position:
               
chrX:43115362-43114951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
83-509
               

               
Cow position:
               
chrX:28013227-28013661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:6488778-6488364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:12250028-12249583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:17231950-17231512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 283
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:20152061-20151628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 40
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:27508811-27509242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:30962662-30963094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 204
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:31489734-31489290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 164
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:34543999-34543565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 254
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:38549659-38549226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
83-510
               

               
Cow position:
               
chrX:46532277-46532731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 440
               

               
Conread position:
               
83-511
               

               
Cow position:
               
chrX:26493220-26492779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
83-513
               

               
Cow position:
               
chrX:10865657-10866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
37, 176
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chrX:27442325-27442791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
40, 224
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chrX:33466835-33466381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
83-521
               

               
Cow position:
               
chrX:34554937-34554494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 208
               

               
Conread position:
               
83-523
               

               
Cow position:
               
chrX:15006946-15007386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 37
               

               
Conread position:
               
83-539
               

               
Cow position:
               
chrX:25815686-25816150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 99
               

               
Conread position:
               
83-539
               

               
Cow position:
               
chrX:41674310-41673850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chrX:4632641-4633107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 213
               

               
Conread position:
               
83-540
               

               
Cow position:
               
chrX:41878724-41879186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 33
               

               
Conread position:
               
84-219
               

               
Cow position:
               
chrX:30672172-30672314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-225
               

               
Cow position:
               
chrX:16801055-16801193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
84-232
               

               
Cow position:
               
chrX:42760465-42760315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-233
               

               
Cow position:
               
chrX:37867645-37867494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-250
               

               
Cow position:
               
chrX:8642257-8642091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 127
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chrX:34420948-34420733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
84-298
               

               
Cow position:
               
chrX:39290567-39290356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
84-299
               

               
Cow position:
               
chrX:26843054-26843274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-330
               

               
Cow position:
               
chrX:46793538-46793780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
84-351
               

               
Cow position:
               
chrX:1360294-1360028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
84-408
               

               
Cow position:
               
chrX:10829647-10829317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
39, 211
               

               
Conread position:
               
84-411
               

               
Cow position:
               
chrX:26881350-26881685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
32, 308
               

               
Conread position:
               
84-447
               

               
Cow position:
               
chrX:44040389-44040039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 152
               

               
Conread position:
               
84-493
               

               
Cow position:
               
chrX:4825636-4826033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
84-495
               

               
Cow position:
               
chrX:8731306-8730871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
84-498
               

               
Cow position:
               
chrX:48237028-48236602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
84-508
               

               
Cow position:
               
chrX:28632270-28632700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 212
               

               
Conread position:
               
84-508
               

               
Cow position:
               
chrX:34238935-34238501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 278
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chrX:9634980-9635403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chrX:12309173-12309611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 229
               

               
Conread position:
               
84-510
               

               
Cow position:
               
chrX:28846680-28847101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
84-540
               

               
Cow position:
               
chrX:16721578-16722057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 224
               

               
Conread position:
               
84-540
               

               
Cow position:
               
chrX:34377151-34376702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
85-299
               

               
Cow position:
               
chrX:25845862-25846077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
85-311
               

               
Cow position:
               
chrX:42432303-42432528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chrX:12219357-12219118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 179
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chrX:44091134-44090888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 228
               

               
Conread position:
               
85-330
               

               
Cow position:
               
chrX:48198437-48198681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 124
               

               
Conread position:
               
85-375
               

               
Cow position:
               
chrX:22284050-22283750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
85-381
               

               
Cow position:
               
chrX:10859102-10859386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
85-381
               

               
Cow position:
               
chrX:48071373-48071073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 228
               

               
Conread position:
               
85-391
               

               
Cow position:
               
chrX:4296613-4296917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 201
               

               
Conread position:
               
85-405
               

               
Cow position:
               
chrX:17949281-17949601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
85-426
               

               
Cow position:
               
chrX:48262816-48262474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
85-433
               

               
Cow position:
               
chrX:22921532-22921177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
85-434
               

               
Cow position:
               
chrX:45449121-45448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 337
               

               
Conread position:
               
85-438
               

               
Cow position:
               
chrX:869971-870314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
85-493
               

               
Cow position:
               
chrX:842366-841953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
85-493
               

               
Cow position:
               
chrX:44397222-44396809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 126
               

               
Conread position:
               
85-497
               

               
Cow position:
               
chrX:16996705-16996296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 232
               

               
Conread position:
               
85-497
               

               
Cow position:
               
chrX:47210625-47211057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
85-499
               

               
Cow position:
               
chrX:38853422-38852986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 156
               

               
Conread position:
               
85-505
               

               
Cow position:
               
chrX:40035228-40035663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 172
               

               
Conread position:
               
85-509
               

               
Cow position:
               
chrX:27515070-27514647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 201
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chrX:9361095-9360661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chrX:21663506-21663087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
37, 194
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chrX:36976163-36975727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 183
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chrX:40183143-40183572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
85-510
               

               
Cow position:
               
chrX:47344510-47344072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 279
               

               
Conread position:
               
85-521
               

               
Cow position:
               
chrX:13868915-13868458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
85-522
               

               
Cow position:
               
chrX:32330382-32329926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 155
               

               
Conread position:
               
86-286
               

               
Cow position:
               
chrX:25049071-25049273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
86-324
               

               
Cow position:
               
chrX:48570633-48570872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 227
               

               
Conread position:
               
86-330
               

               
Cow position:
               
chrX:44590851-44591096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
40, 227
               

               
Conread position:
               
86-366
               

               
Cow position:
               
chrX:48004056-48003774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
86-411
               

               
Cow position:
               
chrX:44744612-44744934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
86-415
               

               
Cow position:
               
chrX:18111589-18111269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 219
               

               
Conread position:
               
86-415
               

               
Cow position:
               
chrX:40320617-40320284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 232
               

               
Conread position:
               
86-433
               

               
Cow position:
               
chrX:48646399-48646739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
86-510
               

               
Cow position:
               
chrX:30922382-30921963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 200
               

               
Conread position:
               
86-510
               

               
Cow position:
               
chrX:35543094-35542669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
86-540
               

               
Cow position:
               
chrX:31250600-31250137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 315
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chrX:44201836-44202081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chrX:44859653-44859897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 226
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chrX:46722380-46722624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 226
               

               
Conread position:
               
87-416
               

               
Cow position:
               
chrX:46022984-46022667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 151
               

               
Conread position:
               
87-430
               

               
Cow position:
               
chrX:36393132-36393483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chrX:15597237-15596816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 199
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chrX:21642272-21642700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 199
               

               
Conread position:
               
87-510
               

               
Cow position:
               
chrX:31948725-31949153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 248
               

               
Conread position:
               
87-521
               

               
Cow position:
               
chrX:31294360-31294778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 194
               

               
Conread position:
               
87-537
               

               
Cow position:
               
chrX:22813274-22812812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
87-540
               

               
Cow position:
               
chrX:41790218-41790695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 293
               

               
Conread position:
               
88-291
               

               
Cow position:
               
chrX:19761957-19761758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
88-330
               

               
Cow position:
               
chrX:47013193-47013437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 217
               

               
Conread position:
               
88-440
               

               
Cow position:
               
chrX:36061367-36061010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
88-452
               

               
Cow position:
               
chrX:41068928-41068565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
89-353
               

               
Cow position:
               
chrX:27511628-27511367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
236, 37
               

               
Conread position:
               
90-226
               

               
Cow position:
               
chrX:28107052-28106916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
91-234
               

               
Cow position:
               
chrX:46533099-46533244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
91-330
               

               
Cow position:
               
chrX:44736650-44736890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 222
               

               
Conread position:
               
91-405
               

               
Cow position:
               
chrX:4991819-4992127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
91-415
               

               
Cow position:
               
chrX:27945848-27946180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
91-475
               

               
Cow position:
               
chrX:47484057-47484459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
91-510
               

               
Cow position:
               
chrX:21064487-21064064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
91-510
               

               
Cow position:
               
chrX:48010810-48010372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
91-515
               

               
Cow position:
               
chrX:16541451-16541903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
31, 165
               

               
Conread position:
               
91-521
               

               
Cow position:
               
chrX:11844035-11844477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 249
               

               
Conread position:
               
93-540
               

               
Cow position:
               
chrX:1055178-1055643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
96-330
               

               
Cow position:
               
chrX:44660388-44660622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 155
               

               
Conread position:
               
97-330
               

               
Cow position:
               
chrX:48652239-48652467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
97-442
               

               
Cow position:
               
chrX:5919691-5919349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
97-469
               

               
Cow position:
               
chrX:7337042-7336645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
97-517
               

               
Cow position:
               
chrX:34662647-34663071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
98-504
               

               
Cow position:
               
chrX:6414235-6413830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
99-372
               

               
Cow position:
               
chrX:39220283-39220001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 212
               

               
Conread position:
               
99-463
               

               
Cow position:
               
chrX:169344-169701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 154
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chrX:13647587-13648006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 158
               

               
Conread position:
               
99-510
               

               
Cow position:
               
chrX:21672759-21672329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 202
               

               
Conread position:
               
100-306
               

               
Cow position:
               
chrX:11859340-11859548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
100-440
               

               
Cow position:
               
chrX:27302073-27301724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 242
               

               
Conread position:
               
102-539
               

               
Cow position:
               
chrX:41733004-41733439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
102-540
               

               
Cow position:
               
chrX:34753980-34754447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 217
               

               
Conread position:
               
103-281
               

               
Cow position:
               
chrX:39180040-39180219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
103-390
               

               
Cow position:
               
chrX:40283316-40283029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
104-529
               

               
Cow position:
               
chrX:37836770-37836345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
105-488
               

               
Cow position:
               
chrX:4515879-4515467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
105-540
               

               
Cow position:
               
chrX:34532709-34532276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
106-521
               

               
Cow position:
               
chrX:28865814-28866228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 138
               

               
Conread position:
               
109-508
               

               
Cow position:
               
chrX:37575028-37574636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
109-538
               

               
Cow position:
               
chrX:17042867-17042438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chrX:17964335-17964744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
110-511
               

               
Cow position:
               
chrX:10959205-10959626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
111-411
               

               
Cow position:
               
chrX:27119871-27119582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
183, 9
               

               
Conread position:
               
113-358
               

               
Cow position:
               
chrX:18964642-18964889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
113-466
               

               
Cow position:
               
chrX:31252591-31252239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
113-510
               

               
Cow position:
               
chrX:16416686-16416286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
114-402
               

               
Cow position:
               
chrX:47657565-47657276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
115-466
               

               
Cow position:
               
chrX:16514089-16514443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 30
               

               
Conread position:
               
118-330
               

               
Cow position:
               
chrX:48397651-48397862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
193, 0
               

               
Conread position:
               
119-477
               

               
Cow position:
               
chrX:44656787-44657154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
176, 25
               

               
Conread position:
               
119-497
               

               
Cow position:
               
chrX:47046338-47046729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
210, 115
               

               
Conread position:
               
120-508
               

               
Cow position:
               
chrX:5017245-5017628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
120-539
               

               
Cow position:
               
chrX:28878000-28878416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 20
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chrX:45489094-45488884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 187
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chrX:6541552-6541791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
121-501
               

               
Cow position:
               
chrX:46770789-46771185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
121-520
               

               
Cow position:
               
chrX:24287760-24288151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
299, 36
               

               
Conread position:
               
121-540
               

               
Cow position:
               
chrX:36311744-36311344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
164, 124
               

               
Conread position:
               
122-381
               

               
Cow position:
               
chrX:33204796-33205052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 135
               

               
Conread position:
               
123-282
               

               
Cow position:
               
chrX:36313835-36313993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
123-521
               

               
Cow position:
               
chrX:14599704-14599297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 51
               

               
Conread position:
               
124-464
               

               
Cow position:
               
chrX:47165714-47166061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
125-510
               

               
Cow position:
               
chrX:40480695-40481093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
126-496
               

               
Cow position:
               
chrX:17630632-17631011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
126-510
               

               
Cow position:
               
chrX:17662432-17662819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 13
               

               
Conread position:
               
126-510
               

               
Cow position:
               
chrX:38006603-38006990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 21
               

               
Conread position:
               
126-519
               

               
Cow position:
               
chrX:42011450-42011049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
128-367
               

               
Cow position:
               
chrX:38208378-38208617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
201, 128
               

               
Conread position:
               
128-476
               

               
Cow position:
               
chrX:42235356-42235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 257
               

               
Conread position:
               
130-349
               

               
Cow position:
               
chrX:32977921-32978133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
199, 41
               

               
Conread position:
               
130-497
               

               
Cow position:
               
chrX:18694767-18695129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 37
               

               
Conread position:
               
130-521
               

               
Cow position:
               
chrX:34503087-34502684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 165
               

               
Conread position:
               
131-330
               

               
Cow position:
               
chrX:43116889-43116690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-424
               

               
Cow position:
               
chrX:6259986-6260289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
198, 26
               

               
Conread position:
               
132-323
               

               
Cow position:
               
chrX:20743768-20743575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
132-381
               

               
Cow position:
               
chrX:45883808-45884063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 138
               

               
Conread position:
               
132-391
               

               
Cow position:
               
chrX:37129432-37129171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
159, 230
               

               
Conread position:
               
132-396
               

               
Cow position:
               
chrX:16348408-16348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
132-398
               

               
Cow position:
               
chrX:29938254-29937983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
159, 226
               

               
Conread position:
               
132-425
               

               
Cow position:
               
chrX:9365513-9365806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
197, 169
               

               
Conread position:
               
132-433
               

               
Cow position:
               
chrX:616095-616401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 257
               

               
Conread position:
               
132-439
               

               
Cow position:
               
chrX:11084900-11085202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
132-439
               

               
Cow position:
               
chrX:29680099-29680404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
132-472
               

               
Cow position:
               
chrX:36068182-36067835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
24, 246
               

               
Conread position:
               
132-477
               

               
Cow position:
               
chrX:23785811-23785464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
22, 78
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chrX:33493940-33493555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chrX:618847-619230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chrX:27393863-27394236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 169
               

               
Conread position:
               
132-510
               

               
Cow position:
               
chrX:34402168-34401775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
132-523
               

               
Cow position:
               
chrX:13382488-13382088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
132-525
               

               
Cow position:
               
chrX:43730061-43730452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 127
               

               
Conread position:
               
132-537
               

               
Cow position:
               
chrX:27516683-27516283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
132-540
               

               
Cow position:
               
chrX:38226949-38227345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
128, 19
               

               
Conread position:
               
133-330
               

               
Cow position:
               
chrX:45064630-45064826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
133-365
               

               
Cow position:
               
chrX:19965234-19965474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
133-390
               

               
Cow position:
               
chrX:29549392-29549644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
166, 17
               

               
Conread position:
               
133-405
               

               
Cow position:
               
chrX:29194390-29194123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
133-440
               

               
Cow position:
               
chrX:45099290-45098976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 124
               

               
Conread position:
               
133-440
               

               
Cow position:
               
chrX:46433652-46433341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 28
               

               
Conread position:
               
133-526
               

               
Cow position:
               
chrX:17726138-17725739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 254
               

               
Conread position:
               
134-514
               

               
Cow position:
               
chrX:6278337-6278732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
134-522
               

               
Cow position:
               
chrX:37489877-37489495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
135-540
               

               
Cow position:
               
chrX:31373696-31373319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
316, 127
               

               
Conread position:
               
136-510
               

               
Cow position:
               
chrX:878221-878593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 192
               

               
Conread position:
               
136-510
               

               
Cow position:
               
chrX:28134497-28134124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 72
               

               
Conread position:
               
137-496
               

               
Cow position:
               
chrX:17888265-17888614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 104
               

               
Conread position:
               
138-317
               

               
Cow position:
               
chrX:25412062-25411886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
138-477
               

               
Cow position:
               
chrX:31312186-31311836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 241
               

               
Conread position:
               
138-504
               

               
Cow position:
               
chrX:20801926-20801563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
140-297
               

               
Cow position:
               
chrX:31829306-31829463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-370
               

               
Cow position:
               
chrX:11317813-11318044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
82, 91
               

               
Conread position:
               
140-485
               

               
Cow position:
               
chrX:40809848-40809489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
140-510
               

               
Cow position:
               
chrX:6265444-6265808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
140-510
               

               
Cow position:
               
chrX:20697456-20697830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
140-510
               

               
Cow position:
               
chrX:45113775-45113406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
140-519
               

               
Cow position:
               
chrX:24424246-24424619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
265, 147
               

               
Conread position:
               
140-540
               

               
Cow position:
               
chrX:11614847-11614466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
189, 11
               

               
Conread position:
               
141-323
               

               
Cow position:
               
chrX:32318460-32318276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chrX:36514739-36514973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
141-377
               

               
Cow position:
               
chrX:23562786-23562551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
188, 161
               

               
Conread position:
               
141-385
               

               
Cow position:
               
chrX:23113440-23113186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
141-452
               

               
Cow position:
               
chrX:22453945-22454252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
243, 30
               

               
Conread position:
               
141-505
               

               
Cow position:
               
chrX:32623724-32623365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
161, 35
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chrX:5872471-5872091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 151
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chrX:33640129-33639749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 162
               

               
Conread position:
               
141-510
               

               
Cow position:
               
chrX:41884258-41884640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 246
               

               
Conread position:
               
141-513
               

               
Cow position:
               
chrX:45175006-45174619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
142-423
               

               
Cow position:
               
chrX:38728887-38728608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
187, 135
               

               
Conread position:
               
143-281
               

               
Cow position:
               
chrX:47342267-47342130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
143-510
               

               
Cow position:
               
chrX:29289730-29289354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 160
               

               
Conread position:
               
145-509
               

               
Cow position:
               
chrX:23092023-23091660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 182
               

               
Conread position:
               
145-510
               

               
Cow position:
               
chrX:5900612-5900235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
184, 93
               

               
Conread position:
               
147-500
               

               
Cow position:
               
chrX:678427-678780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
147-510
               

               
Cow position:
               
chrX:27771820-27772178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
147-510
               

               
Cow position:
               
chrX:32170741-32171104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
166, 87
               

               
Conread position:
               
147-540
               

               
Cow position:
               
chrX:40557528-40557931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 244
               

               
Conread position:
               
148-500
               

               
Cow position:
               
chrX:3130718-3130369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
181, 13
               

               
Conread position:
               
150-295
               

               
Cow position:
               
chrX:29501739-29501881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
151-299
               

               
Cow position:
               
chrX:4615868-4616019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
125, 6
               

               
Conread position:
               
151-364
               

               
Cow position:
               
chrX:22914898-22915107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
181, 47
               

               
Conread position:
               
151-412
               

               
Cow position:
               
chrX:5679428-5679684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
151-431
               

               
Cow position:
               
chrX:42873529-42873255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
151-488
               

               
Cow position:
               
chrX:43779708-43780053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
151-504
               

               
Cow position:
               
chrX:4043723-4044066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 87
               

               
Conread position:
               
151-509
               

               
Cow position:
               
chrX:9416540-9416914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 120
               

               
Conread position:
               
151-510
               

               
Cow position:
               
chrX:43527652-43527281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 137
               

               
Conread position:
               
151-540
               

               
Cow position:
               
chrX:7695892-7695508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
151-540
               

               
Cow position:
               
chrX:8797393-8796995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 88
               

               
Conread position:
               
152-430
               

               
Cow position:
               
chrX:7710396-7710679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
152-506
               

               
Cow position:
               
chrX:22624619-22624263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 93
               

               
Conread position:
               
152-521
               

               
Cow position:
               
chrX:11073049-11073427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 5
               

               
Conread position:
               
152-534
               

               
Cow position:
               
chrX:46700706-46701063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
302, 83
               

               
Conread position:
               
152-539
               

               
Cow position:
               
chrX:36778541-36778152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
181, 39
               

               
Conread position:
               
153-510
               

               
Cow position:
               
chrX:38071629-38071993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
182, 62
               

               
Conread position:
               
153-540
               

               
Cow position:
               
chrX:23583705-23583303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
154-330
               

               
Cow position:
               
chrX:47514495-47514669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
155-398
               

               
Cow position:
               
chrX:48044376-48044618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
155-506
               

               
Cow position:
               
chrX:37910583-37910234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
155-508
               

               
Cow position:
               
chrX:45414165-45414520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
156-469
               

               
Cow position:
               
chrX:16532335-16532028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 98
               

               
Conread position:
               
156-494
               

               
Cow position:
               
chrX:10302482-10302132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
157-353
               

               
Cow position:
               
chrX:46429681-46429881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
157-430
               

               
Cow position:
               
chrX:37986363-37986097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
157-498
               

               
Cow position:
               
chrX:29121185-29120846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
157-508
               

               
Cow position:
               
chrX:41123197-41122852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 95
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chrX:35288793-35288438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
157-510
               

               
Cow position:
               
chrX:47054387-47054750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
141, 84
               

               
Conread position:
               
157-521
               

               
Cow position:
               
chrX:30543146-30543518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
157-529
               

               
Cow position:
               
chrX:1503465-1503096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 77
               

               
Conread position:
               
158-327
               

               
Cow position:
               
chrX:10305214-10305379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
158-440
               

               
Cow position:
               
chrX:20584465-20584177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
154, 231
               

               
Conread position:
               
158-540
               

               
Cow position:
               
chrX:10411847-10412241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 146
               

               
Conread position:
               
159-517
               

               
Cow position:
               
chrX:917232-917601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
170, 112
               

               
Conread position:
               
159-537
               

               
Cow position:
               
chrX:11082486-11082863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 179
               

               
Conread position:
               
160-504
               

               
Cow position:
               
chrX:488639-488274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 238
               

               
Conread position:
               
160-510
               

               
Cow position:
               
chrX:42171162-42171521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
149, 7
               

               
Conread position:
               
160-517
               

               
Cow position:
               
chrX:39126461-39126110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
161-381
               

               
Cow position:
               
chrX:31515308-31515081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
161-438
               

               
Cow position:
               
chrX:19273573-19273867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
136, 216
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chrX:630176-630520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
161-510
               

               
Cow position:
               
chrX:43568053-43567717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
79, 86
               

               
Conread position:
               
162-490
               

               
Cow position:
               
chrX:7278044-7277717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 141
               

               
Conread position:
               
163-476
               

               
Cow position:
               
chrX:7162188-7161883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
133, 78
               

               
Conread position:
               
163-500
               

               
Cow position:
               
chrX:37232539-37232197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 114
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chrX:39558217-39558568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
163-510
               

               
Cow position:
               
chrX:47481928-47481577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
165, 66
               

               
Conread position:
               
164-465
               

               
Cow position:
               
chrX:38066324-38066616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
142, 161
               

               
Conread position:
               
164-497
               

               
Cow position:
               
chrX:45846232-45845886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
133, 95
               

               
Conread position:
               
164-508
               

               
Cow position:
               
chrX:42469810-42470157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 177
               

               
Conread position:
               
164-510
               

               
Cow position:
               
chrX:1514288-1514623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 71
               

               
Conread position:
               
165-510
               

               
Cow position:
               
chrX:7572037-7571684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 224
               

               
Conread position:
               
165-510
               

               
Cow position:
               
chrX:19690345-19689996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
190, 120
               

               
Conread position:
               
167-510
               

               
Cow position:
               
chrX:35413739-35413410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
167-521
               

               
Cow position:
               
chrX:11938805-11939160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 135
               

               
Conread position:
               
168-381
               

               
Cow position:
               
chrX:20881818-20882025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
161, 40
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chrX:26625548-26625897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
120, 186
               

               
Conread position:
               
172-513
               

               
Cow position:
               
chrX:9161699-9161363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
172-538
               

               
Cow position:
               
chrX:8925822-8925452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 120
               

               
Conread position:
               
173-517
               

               
Cow position:
               
chrX:43049453-43049114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
174-400
               

               
Cow position:
               
chrX:12203274-12203494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 122
               

               
Conread position:
               
175-510
               

               
Cow position:
               
chrX:47967727-47967377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
176-433
               

               
Cow position:
               
chrX:21566526-21566263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
176-505
               

               
Cow position:
               
chrX:27176195-27176537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chrX:31340828-31340483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 7
               

               
Conread position:
               
176-510
               

               
Cow position:
               
chrX:11856549-11856207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 169
               

               
Conread position:
               
176-517
               

               
Cow position:
               
chrX:21004804-21004452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 207
               

               
Conread position:
               
176-540
               

               
Cow position:
               
chrX:25338305-25337922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
132, 5
               

               
Conread position:
               
178-324
               

               
Cow position:
               
chrX:48532287-48532142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
178-330
               

               
Cow position:
               
chrX:44238792-44238944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
178-330
               

               
Cow position:
               
chrX:48652460-48652611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
178-394
               

               
Cow position:
               
chrX:44090895-44090672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
178-422
               

               
Cow position:
               
chrX:45005741-45005502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 134
               

               
Conread position:
               
178-427
               

               
Cow position:
               
chrX:44837093-44836851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
150, 58
               

               
Conread position:
               
178-440
               

               
Cow position:
               
chrX:47302760-47303021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
148, 133
               

               
Conread position:
               
178-486
               

               
Cow position:
               
chrX:47300786-47301102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
151, 138
               

               
Conread position:
               
178-487
               

               
Cow position:
               
chrX:45149285-45148975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
204, 121
               

               
Conread position:
               
178-493
               

               
Cow position:
               
chrX:44834679-44835021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 103
               

               
Conread position:
               
178-508
               

               
Cow position:
               
chrX:31260497-31260850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 205
               

               
Conread position:
               
178-510
               

               
Cow position:
               
chrX:45089563-45089221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
150, 108
               

               
Conread position:
               
178-510
               

               
Cow position:
               
chrX:45403708-45404056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 100
               

               
Conread position:
               
178-510
               

               
Cow position:
               
chrX:46722617-46722963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 136
               

               
Conread position:
               
178-510
               

               
Cow position:
               
chrX:48194918-48195263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 95
               

               
Conread position:
               
178-512
               

               
Cow position:
               
chrX:48652604-48652953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
150, 133
               

               
Conread position:
               
181-475
               

               
Cow position:
               
chrX:47362509-47362799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 75
               

               
Conread position:
               
181-510
               

               
Cow position:
               
chrX:4865347-4865029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
181-510
               

               
Cow position:
               
chrX:35224410-35224080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 108
               

               
Conread position:
               
181-518
               

               
Cow position:
               
chrX:28111623-28111276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
181-521
               

               
Cow position:
               
chrX:15815197-15814861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 19
               

               
Conread position:
               
181-521
               

               
Cow position:
               
chrX:38936814-38936465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
182-443
               

               
Cow position:
               
chrX:48570875-48571146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 258
               

               
Conread position:
               
182-508
               

               
Cow position:
               
chrX:7509252-7508919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
183-510
               

               
Cow position:
               
chrX:755076-754736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
185-508
               

               
Cow position:
               
chrX:2467994-2467659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 148
               

               
Conread position:
               
186-539
               

               
Cow position:
               
chrX:27680507-27680148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 72
               

               
Conread position:
               
187-508
               

               
Cow position:
               
chrX:40692643-40692958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 177
               

               
Conread position:
               
190-505
               

               
Cow position:
               
chrX:7497347-7497028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
191-510
               

               
Cow position:
               
chrX:7646355-7646036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 93
               

               
Conread position:
               
193-440
               

               
Cow position:
               
chrX:45993332-45993078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
195-433
               

               
Cow position:
               
chrX:27685349-27685108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
21, 111
               

               
Conread position:
               
199-540
               

               
Cow position:
               
chrX:26440689-26441035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
202-510
               

               
Cow position:
               
chrX:37843810-37843498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
204-540
               

               
Cow position:
               
chrX:24105718-24105371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
8, 113
               

               
Conread position:
               
205-486
               

               
Cow position:
               
chrX:12405291-12405575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 236
               

               
Conread position:
               
208-510
               

               
Cow position:
               
chrX:20710161-20709849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
209-421
               

               
Cow position:
               
chrX:16055293-16055084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
210-513
               

               
Cow position:
               
chrX:42507563-42507872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
211-515
               

               
Cow position:
               
chrX:48800622-48800309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
214-420
               

               
Cow position:
               
chrX:19003374-19003174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
214-477
               

               
Cow position:
               
chrX:37541198-37540935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
114, 8
               

               
Conread position:
               
216-510
               

               
Cow position:
               
chrX:11589509-11589814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
110, 85
               

               
Conread position:
               
222-497
               

               
Cow position:
               
chrX:6234376-6234657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 278
               

               
Conread position:
               
230-540
               

               
Cow position:
               
chrX:34192735-34192425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
231-467
               

               
Cow position:
               
chrX:13785296-13785537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 158
               

               
Conread position:
               
238-514
               

               
Cow position:
               
chrX:10437610-10437892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
195, 113
               

               
Conread position:
               
240-510
               

               
Cow position:
               
chrX:26875826-26876103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 124
               

               
Conread position:
               
241-508
               

               
Cow position:
               
chrX:28845887-28845626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
76, 164
               

               
Conread position:
               
241-510
               

               
Cow position:
               
chrX:28105972-28105699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
241-540
               

               
Cow position:
               
chrX:12018346-12018020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
85, 72
               

               
Conread position:
               
242-485
               

               
Cow position:
               
chrX:36961692-36961438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
242-508
               

               
Cow position:
               
chrX:25232644-25232370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
243-477
               

               
Cow position:
               
chrX:18195974-18195752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
243-510
               

               
Cow position:
               
chrX:40648038-40647756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
243-510
               

               
Cow position:
               
chrX:41199158-41198882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
86, 176
               

               
Conread position:
               
246-452
               

               
Cow position:
               
chrX:41991998-41992204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
246-485
               

               
Cow position:
               
chrX:34270449-34270209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
246-501
               

               
Cow position:
               
chrX:23970430-23970176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
246-510
               

               
Cow position:
               
chrX:40452169-40452435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
246-510
               

               
Cow position:
               
chrX:47191358-47191621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
246-524
               

               
Cow position:
               
chrX:35681389-35681107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
246-538
               

               
Cow position:
               
chrX:15139500-15139796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
80, 6
               

               
Conread position:
               
246-540
               

               
Cow position:
               
chrX:42875032-42874723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
247-508
               

               
Cow position:
               
chrX:40789262-40788984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
254-487
               

               
Cow position:
               
chrX:4091681-4091448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
254-493
               

               
Cow position:
               
chrX:26286022-26285774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 90
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chrX:14925041-14924778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chrX:47379426-47379689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 171
               

               
Conread position:
               
254-515
               

               
Cow position:
               
chrX:29509397-29509671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
255-505
               

               
Cow position:
               
chrX:47756888-47757146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
255-510
               

               
Cow position:
               
chrX:12116087-12115816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
255-510
               

               
Cow position:
               
chrX:14900690-14900943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
181, 46
               

               
Conread position:
               
255-521
               

               
Cow position:
               
chrX:42994653-42994378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
255-530
               

               
Cow position:
               
chrX:34991076-34990799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 132
               

               
Conread position:
               
255-539
               

               
Cow position:
               
chrX:32127952-32128227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
255-540
               

               
Cow position:
               
chrX:17498125-17497841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
257-497
               

               
Cow position:
               
chrX:10123315-10123554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 56
               

               
Conread position:
               
257-510
               

               
Cow position:
               
chrX:11581971-11581712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
257-510
               

               
Cow position:
               
chrX:42585040-42585291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
169, 76
               

               
Conread position:
               
259-501
               

               
Cow position:
               
chrX:19015473-19015229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
259-508
               

               
Cow position:
               
chrX:9855334-9855080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
176, 73
               

               
Conread position:
               
259-508
               

               
Cow position:
               
chrX:9954175-9953921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
176, 73
               

               
Conread position:
               
259-510
               

               
Cow position:
               
chrX:45412625-45412877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
70, 45
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chrX:41743950-41743683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 167
               

               
Conread position:
               
259-539
               

               
Cow position:
               
chrX:9997298-9997585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 46
               

               
Conread position:
               
262-491
               

               
Cow position:
               
chrX:17908255-17908487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
262-500
               

               
Cow position:
               
chrX:40567631-40567387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
262-521
               

               
Cow position:
               
chrX:38439514-38439237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 126
               

               
Conread position:
               
262-540
               

               
Cow position:
               
chrX:36249828-36250117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
263-477
               

               
Cow position:
               
chrX:45875030-45874809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
265-497
               

               
Cow position:
               
chrX:45015606-45015377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
64, 38
               

               
Conread position:
               
269-453
               

               
Cow position:
               
chrX:35969060-35969247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
271-439
               

               
Cow position:
               
chrX:36314271-36314439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
124, 21
               

               
Conread position:
               
271-505
               

               
Cow position:
               
chrX:47232856-47232620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
271-508
               

               
Cow position:
               
chrX:2029416-2029170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
271-508
               

               
Cow position:
               
chrX:23497643-23497883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
271-510
               

               
Cow position:
               
chrX:41166938-41167186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 235
               

               
Conread position:
               
271-522
               

               
Cow position:
               
chrX:20752278-20752026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
271-523
               

               
Cow position:
               
chrX:42461720-42461982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
272-510
               

               
Cow position:
               
chrX:44053283-44053036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 116
               

               
Conread position:
               
272-519
               

               
Cow position:
               
chrX:40116440-40116194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chrX:4750281-4750518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chrX:20583044-20582810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
278-433
               

               
Cow position:
               
chrX:48385339-48385499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
278-514
               

               
Cow position:
               
chrX:7425487-7425239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
280-494
               

               
Cow position:
               
chrX:39938508-39938729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
280-521
               

               
Cow position:
               
chrX:35409675-35409432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
282-504
               

               
Cow position:
               
chrX:11410020-11410243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
285-497
               

               
Cow position:
               
chrX:35284631-35284414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
286-478
               

               
Cow position:
               
chrX:1505720-1505522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
286-508
               

               
Cow position:
               
chrX:1728417-1728640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
286-510
               

               
Cow position:
               
chrX:23061444-23061232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
286-540
               

               
Cow position:
               
chrX:30163005-30162742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
288-540
               

               
Cow position:
               
chrX:28157507-28157230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
290-493
               

               
Cow position:
               
chrX:29876070-29876272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
290-521
               

               
Cow position:
               
chrX:48246842-48247068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
291-407
               

               
Cow position:
               
chrX:32747689-32747570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
291-539
               

               
Cow position:
               
chrX:43647742-43647996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
292-498
               

               
Cow position:
               
chrX:48248829-48248614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 44
               

               
Conread position:
               
292-508
               

               
Cow position:
               
chrX:35609993-35609766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
292-510
               

               
Cow position:
               
chrX:13265621-13265842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
292-513
               

               
Cow position:
               
chrX:13058576-13058355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
292-518
               

               
Cow position:
               
chrX:28098115-28097895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
143, 11
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chrX:42338943-42339156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
124, 39
               

               
Conread position:
               
294-501
               

               
Cow position:
               
chrX:46315375-46315592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
294-540
               

               
Cow position:
               
chrX:25238172-25237923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
295-487
               

               
Cow position:
               
chrX:30832848-30833045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
295-497
               

               
Cow position:
               
chrX:35387900-35388115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
295-508
               

               
Cow position:
               
chrX:11746850-11746622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
7, 216
               

               
Conread position:
               
295-510
               

               
Cow position:
               
chrX:3653760-3653541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
296-433
               

               
Cow position:
               
chrX:36723089-36723230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
296-508
               

               
Cow position:
               
chrX:16789853-16790057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
296-510
               

               
Cow position:
               
chrX:7718854-7718631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
297-463
               

               
Cow position:
               
chrX:29563379-29563546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chrX:42086855-42086649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
298-530
               

               
Cow position:
               
chrX:37048579-37048823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
299-510
               

               
Cow position:
               
chrX:2206558-2206766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
301-508
               

               
Cow position:
               
chrX:18456396-18456172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
301-516
               

               
Cow position:
               
chrX:42282423-42282205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
302-510
               

               
Cow position:
               
chrX:2383483-2383267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
302-513
               

               
Cow position:
               
chrX:35042219-35041994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
302-521
               

               
Cow position:
               
chrX:32743529-32743302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
302-523
               

               
Cow position:
               
chrX:19019111-19019347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
305-507
               

               
Cow position:
               
chrX:42587437-42587648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
305-510
               

               
Cow position:
               
chrX:1810172-1810383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
305-510
               

               
Cow position:
               
chrX:21665603-21665815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
31, 198
               

               
Conread position:
               
305-513
               

               
Cow position:
               
chrX:19188929-19188711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
305-516
               

               
Cow position:
               
chrX:41403970-41403744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
305-516
               

               
Cow position:
               
chrX:41410518-41410292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
307-517
               

               
Cow position:
               
chrX:877044-877255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 18
               

               
Conread position:
               
311-505
               

               
Cow position:
               
chrX:48684239-48684440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
312-508
               

               
Cow position:
               
chrX:2648369-2648570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
312-508
               

               
Cow position:
               
chrX:7513494-7513296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
119, 23
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chrX:33020467-33020266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
313-510
               

               
Cow position:
               
chrX:39555854-39556039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
316-493
               

               
Cow position:
               
chrX:25411821-25411631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
316-540
               

               
Cow position:
               
chrX:38967628-38967395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
324-493
               

               
Cow position:
               
chrX:24201155-24200984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
326-510
               

               
Cow position:
               
chrX:19930618-19930434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
327-510
               

               
Cow position:
               
chrX:42499062-42499251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
332-452
               

               
Cow position:
               
chrX:41271246-41271370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
334-517
               

               
Cow position:
               
chrX:4942795-4942979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
335-493
               

               
Cow position:
               
chrX:29770215-29770384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
335-496
               

               
Cow position:
               
chrX:35937122-35937284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
335-497
               

               
Cow position:
               
chrX:16324006-16324173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
335-497
               

               
Cow position:
               
chrX:46429900-46430067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
335-510
               

               
Cow position:
               
chrX:4123796-4123613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
335-518
               

               
Cow position:
               
chrX:44731556-44731364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
341-510
               

               
Cow position:
               
chrX:6640082-6639902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
343-510
               

               
Cow position:
               
chrX:42855365-42855186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
344-510
               

               
Cow position:
               
chrX:32978308-32978478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
348-505
               

               
Cow position:
               
chrX:25036750-25036918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
359-510
               

               
Cow position:
               
chrX:48536728-48536887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
366-510
               

               
Cow position:
               
chrX:16531928-16531777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 137
               

               
Conread position:
               
366-537
               

               
Cow position:
               
chrX:7382251-7382073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
369-497
               

               
Cow position:
               
chrX:45976800-45976673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
369-510
               

               
Cow position:
               
chrX:21795420-21795274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
370-540
               

               
Cow position:
               
chrX:25283226-25283399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
371-510
               

               
Cow position:
               
chrX:33205072-33205214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
372-510
               

               
Cow position:
               
chrX:45787573-45787432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
384-497
               

               
Cow position:
               
chrX:10916659-10916545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
384-510
               

               
Cow position:
               
chrX:29049874-29049748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
386-496
               

               
Cow position:
               
chrX:18812162-18812049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
387-540
               

               
Cow position:
               
chrX:32870876-32871041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
390-508
               

               
Cow position:
               
chrX:33519525-33519397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               
Show alignments to all cow chromosomes.