Cow genome map
| Conread name: | Ss1.1-rpigcf0_013848.5 |
| Conread position: | 37-456 |
| Cow position: | chrX:27663463-27663882 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 44-234 |
| Cow position: | chrX:7917668-7917473 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 45-597 |
| Cow position: | chrX:23078006-23078574 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 6 |
| Conread position: | 48-528 |
| Cow position: | chrX:25970132-25970576 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 51-521 |
| Cow position: | chrX:30995594-30995149 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 51-526 |
| Cow position: | chrX:8931695-8931233 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 217, 17 |
| Conread position: | 51-526 |
| Cow position: | chrX:18064288-18063829 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 54-528 |
| Cow position: | chrX:33702149-33702639 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 55-527 |
| Cow position: | chrX:2644401-2643922 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 314 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 56-527 |
| Cow position: | chrX:42866951-42866468 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 70-527 |
| Cow position: | chrX:28209820-28210273 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 71-490 |
| Cow position: | chrX:5798708-5799129 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 71-528 |
| Cow position: | chrX:22971661-22971216 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 317 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 29, 6 |
| Conread position: | 72-431 |
| Cow position: | chrX:130941-131282 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 72-526 |
| Cow position: | chrX:22861743-22861283 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 195 |
| Conread position: | 77-524 |
| Cow position: | chrX:24238658-24239096 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 303 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 88-528 |
| Cow position: | chrX:26361401-26361820 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 93-518 |
| Cow position: | chrX:35846802-35846383 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 93-527 |
| Cow position: | chrX:10420482-10420080 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 299 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 97-526 |
| Cow position: | chrX:30925323-30924904 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 131, 54 |
| Conread position: | 106-475 |
| Cow position: | chrX:23231441-23231803 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 71 |
| Conread position: | 106-528 |
| Cow position: | chrX:34600590-34600167 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 110-527 |
| Cow position: | chrX:33882293-33882697 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 174, 13 |
| Conread position: | 112-528 |
| Cow position: | chrX:23367870-23367455 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 91 |
| Conread position: | 122-525 |
| Cow position: | chrX:2176057-2176456 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 133-528 |
| Cow position: | chrX:42209017-42209408 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 138-484 |
| Cow position: | chrX:30670341-30670684 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 103 |
| Conread position: | 138-485 |
| Cow position: | chrX:47567108-47567440 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 154-508 |
| Cow position: | chrX:37840772-37840427 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 154-522 |
| Cow position: | chrX:42006385-42006011 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 42, 121 |
| Conread position: | 155-527 |
| Cow position: | chrX:34388533-34388924 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 362 |
| Conread position: | 155-528 |
| Cow position: | chrX:5950756-5951116 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 156-356 |
| Cow position: | chrX:136821-136623 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 156-423 |
| Cow position: | chrX:23917428-23917692 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 83 |
| Conread position: | 156-500 |
| Cow position: | chrX:9220572-9220240 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 156-528 |
| Cow position: | chrX:21664070-21664442 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 157-528 |
| Cow position: | chrX:29267540-29267930 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 202 |
| Conread position: | 167-527 |
| Cow position: | chrX:25709839-25710200 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 178-512 |
| Cow position: | chrX:799946-799607 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 6, 68 |
| Conread position: | 237-507 |
| Cow position: | chrX:4763531-4763797 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 252-487 |
| Cow position: | chrX:29719492-29719723 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 264-489 |
| Cow position: | chrX:848320-848545 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 269-524 |
| Cow position: | chrX:16993388-16993646 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 282-489 |
| Cow position: | chrX:8866469-8866274 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 285-527 |
| Cow position: | chrX:3508653-3508905 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 286-488 |
| Cow position: | chrX:33855813-33855618 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 291-527 |
| Cow position: | chrX:8542975-8543207 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 44 |
| Conread position: | 291-527 |
| Cow position: | chrX:42045908-42046140 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 291-527 |
| Cow position: | chrX:42266931-42267166 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 291-528 |
| Cow position: | chrX:45144869-45145114 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 291-555 |
| Cow position: | chrX:37121936-37121680 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 226, 51 |
| Conread position: | 292-447 |
| Cow position: | chrX:7949489-7949642 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 293-528 |
| Cow position: | chrX:42918997-42918766 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 297-545 |
| Cow position: | chrX:27518389-27518635 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 301-528 |
| Cow position: | chrX:11034832-11034608 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 313-528 |
| Cow position: | chrX:30917631-30917418 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 176, 27 |
| Conread position: | 318-485 |
| Cow position: | chrX:15358597-15358433 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 318-522 |
| Cow position: | chrX:46225596-46225797 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 168, 22 |
| Conread position: | 318-526 |
| Cow position: | chrX:11895183-11895390 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 196, 25 |
| Conread position: | 320-526 |
| Cow position: | chrX:38046908-38047101 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 181, 20 |
| Conread position: | 320-528 |
| Cow position: | chrX:22333422-22333223 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 334-498 |
| Cow position: | chrX:10515032-10515193 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 340-510 |
| Cow position: | chrX:4513578-4513409 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 340-521 |
| Cow position: | chrX:46881810-46881993 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 340-527 |
| Cow position: | chrX:9894720-9894902 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 136, 16 |
| Conread position: | 343-528 |
| Cow position: | chrX:15298748-15298564 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 172, 13 |
| Conread position: | 345-528 |
| Cow position: | chrX:34456417-34456230 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 346-528 |
| Cow position: | chrX:2941528-2941345 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 356-542 |
| Cow position: | chrX:26177795-26177610 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 160, 177 |
| Conread position: | 360-525 |
| Cow position: | chrX:1133154-1133322 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 362-528 |
| Cow position: | chrX:37529224-37529063 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 374-527 |
| Cow position: | chrX:1990800-1990648 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 140, 98 |
| Conread position: | 375-527 |
| Cow position: | chrX:36013455-36013304 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 376-561 |
| Cow position: | chrX:28230305-28230115 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 138, 73 |
| Conread position: | 402-528 |
| Cow position: | chrX:25379045-25378918 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 411-528 |
| Cow position: | chrX:40725042-40724924 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
Show alignments to all cow chromosomes.