Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rpigcf0_016288.5
        

               Conread position:
               1-131
               

               Cow position:
               chr3:35283248-35283113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               1-135
               

               Cow position:
               chr3:61191078-61190944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               107, 93
               

               Conread position:
               1-160
               

               Cow position:
               chr3:2396933-2396773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               64, 71
               

               Conread position:
               1-212
               

               Cow position:
               chr3:34937689-34937901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               64, 170
               

               Conread position:
               1-230
               

               Cow position:
               chr3:59101674-59101902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               24, 158
               

               Conread position:
               1-238
               

               Cow position:
               chr3:74600957-74601197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1-245
               

               Cow position:
               chr3:68616479-68616240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               65, 48
               

               Conread position:
               1-249
               

               Cow position:
               chr3:67744777-67744534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               86, 71
               

               Conread position:
               1-255
               

               Cow position:
               chr3:56476526-56476780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               85, 248
               

               Conread position:
               1-255
               

               Cow position:
               chr3:82461023-82461279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               19, 107
               

               Conread position:
               1-257
               

               Cow position:
               chr3:55835979-55835716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               190
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1-257
               

               Cow position:
               chr3:61224896-61224640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               192
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               102, 28
               

               Conread position:
               1-261
               

               Cow position:
               chr3:83442036-83441788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               69, 100
               

               Conread position:
               1-262
               

               Cow position:
               chr3:11987173-11987436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               15, 104
               

               Conread position:
               1-262
               

               Cow position:
               chr3:48241462-48241718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               64, 107
               

               Conread position:
               1-262
               

               Cow position:
               chr3:71238002-71238258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 100
               

               Conread position:
               1-265
               

               Cow position:
               chr3:10958397-10958132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 249
               

               Conread position:
               1-266
               

               Cow position:
               chr3:3985173-3985432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               56, 107
               

               Conread position:
               1-266
               

               Cow position:
               chr3:74134551-74134815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               80, 57
               

               Conread position:
               1-269
               

               Cow position:
               chr3:24468533-24468273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               64, 97
               

               Conread position:
               1-279
               

               Cow position:
               chr3:48810791-48810524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               1-341
               

               Cow position:
               chr3:13507312-13507644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 247
               

               Conread position:
               1-372
               

               Cow position:
               chr3:57624309-57624678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               25, 36
               

               Conread position:
               2-197
               

               Cow position:
               chr3:12978770-12978576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               16, 105
               

               Conread position:
               2-279
               

               Cow position:
               chr3:33329660-33329943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               4-186
               

               Cow position:
               chr3:83201675-83201493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               166, 96
               

               Conread position:
               4-239
               

               Cow position:
               chr3:59799096-59799332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               65, 100
               

               Conread position:
               4-262
               

               Cow position:
               chr3:19585710-19585972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 169
               

               Conread position:
               5-142
               

               Cow position:
               chr3:77496671-77496816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               5-164
               

               Cow position:
               chr3:55106589-55106430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               15, 88
               

               Conread position:
               5-164
               

               Cow position:
               chr3:69849656-69849498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               5-167
               

               Cow position:
               chr3:5851074-5850917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               48, 54
               

               Conread position:
               5-183
               

               Cow position:
               chr3:9843437-9843617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               78, 96
               

               Conread position:
               5-183
               

               Cow position:
               chr3:53192572-53192401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               5-185
               

               Cow position:
               chr3:21341112-21340931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               59, 137
               

               Conread position:
               5-194
               

               Cow position:
               chr3:32184171-32183979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               5-195
               

               Cow position:
               chr3:38828617-38828799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               20, 87
               

               Conread position:
               5-197
               

               Cow position:
               chr3:27697129-27696936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               11, 103
               

               Conread position:
               5-197
               

               Cow position:
               chr3:51578470-51578279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               5-197
               

               Cow position:
               chr3:71161644-71161841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 157
               

               Conread position:
               5-198
               

               Cow position:
               chr3:22820418-22820614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               59, 169
               

               Conread position:
               5-199
               

               Cow position:
               chr3:15057757-15057576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               64, 35
               

               Conread position:
               5-199
               

               Cow position:
               chr3:17895696-17895893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               151, 52
               

               Conread position:
               5-199
               

               Cow position:
               chr3:56523580-56523402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               5-199
               

               Cow position:
               chr3:65800445-65800629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               5-200
               

               Cow position:
               chr3:26981914-26982103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               18, 91
               

               Conread position:
               5-200
               

               Cow position:
               chr3:67929414-67929215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               10, 107
               

               Conread position:
               5-202
               

               Cow position:
               chr3:34294435-34294221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               5-204
               

               Cow position:
               chr3:55819597-55819807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               5-206
               

               Cow position:
               chr3:70631868-70632070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               80, 18
               

               Conread position:
               5-208
               

               Cow position:
               chr3:54434825-54435029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               59, 14
               

               Conread position:
               5-211
               

               Cow position:
               chr3:73759666-73759461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               60, 100
               

               Conread position:
               5-212
               

               Cow position:
               chr3:37186680-37186885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               5-213
               

               Cow position:
               chr3:66609993-66609786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               59, 98
               

               Conread position:
               5-228
               

               Cow position:
               chr3:75711161-75711379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               5-229
               

               Cow position:
               chr3:7940706-7940483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               59, 126
               

               Conread position:
               5-230
               

               Cow position:
               chr3:56525-56302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               60, 18
               

               Conread position:
               5-230
               

               Cow position:
               chr3:4461641-4461409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               62, 136
               

               Conread position:
               5-230
               

               Cow position:
               chr3:76015140-76015367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               10, 77
               

               Conread position:
               5-231
               

               Cow position:
               chr3:79092545-79092317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               15, 101
               

               Conread position:
               5-232
               

               Cow position:
               chr3:26219200-26218974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               60, 29
               

               Conread position:
               5-235
               

               Cow position:
               chr3:61840127-61840355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 13
               

               Conread position:
               5-235
               

               Cow position:
               chr3:72675942-72676171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               62, 96
               

               Conread position:
               5-236
               

               Cow position:
               chr3:25754876-25755101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               201, 94
               

               Conread position:
               5-236
               

               Cow position:
               chr3:34669878-34669652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               11, 103
               

               Conread position:
               5-236
               

               Cow position:
               chr3:50614487-50614722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr3:55109767-55109532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr3:64172295-64172521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               165, 14
               

               Conread position:
               5-238
               

               Cow position:
               chr3:45647530-45647763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               91, 44
               

               Conread position:
               5-238
               

               Cow position:
               chr3:54782167-54781921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               54, 76
               

               Conread position:
               5-239
               

               Cow position:
               chr3:5374184-5374412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               80, 96
               

               Conread position:
               5-239
               

               Cow position:
               chr3:17936985-17936754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               92, 50
               

               Conread position:
               5-239
               

               Cow position:
               chr3:26065853-26066085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               62, 94
               

               Conread position:
               5-239
               

               Cow position:
               chr3:68881262-68881038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               64, 96
               

               Conread position:
               5-239
               

               Cow position:
               chr3:83845754-83845996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               34, 176
               

               Conread position:
               5-242
               

               Cow position:
               chr3:23445044-23444803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               13, 63
               

               Conread position:
               5-243
               

               Cow position:
               chr3:10347205-10347443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               5-244
               

               Cow position:
               chr3:26903965-26904199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               20, 55
               

               Conread position:
               5-244
               

               Cow position:
               chr3:45647982-45648219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               60, 162
               

               Conread position:
               5-247
               

               Cow position:
               chr3:2216213-2216460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               10, 219
               

               Conread position:
               5-248
               

               Cow position:
               chr3:69750851-69750618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               5-250
               

               Cow position:
               chr3:32585003-32585245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               62, 52
               

               Conread position:
               5-250
               

               Cow position:
               chr3:35153471-35153712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               5-250
               

               Cow position:
               chr3:54945978-54946226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               5-250
               

               Cow position:
               chr3:76922813-76922568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 119
               

               Conread position:
               5-251
               

               Cow position:
               chr3:62826769-62826523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               59, 99
               

               Conread position:
               5-252
               

               Cow position:
               chr3:58767119-58767360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               100, 34
               

               Conread position:
               5-253
               

               Cow position:
               chr3:4050042-4050291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 126
               

               Conread position:
               5-253
               

               Cow position:
               chr3:79292679-79292929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               20, 99
               

               Conread position:
               5-255
               

               Cow position:
               chr3:22232802-22232557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               59, 76
               

               Conread position:
               5-256
               

               Cow position:
               chr3:68156588-68156824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               5-257
               

               Cow position:
               chr3:48073024-48072782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               189
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               5-257
               

               Cow position:
               chr3:64281082-64280829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               57, 93
               

               Conread position:
               5-257
               

               Cow position:
               chr3:75479852-75480100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               90, 165
               

               Conread position:
               5-258
               

               Cow position:
               chr3:15052102-15051850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               59, 168
               

               Conread position:
               5-258
               

               Cow position:
               chr3:23408502-23408255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               5-258
               

               Cow position:
               chr3:29813094-29813335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               62, 101
               

               Conread position:
               5-258
               

               Cow position:
               chr3:59597033-59597281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               59, 87
               

               Conread position:
               5-258
               

               Cow position:
               chr3:67704392-67704649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               5-259
               

               Cow position:
               chr3:49650235-49650491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               20, 217
               

               Conread position:
               5-259
               

               Cow position:
               chr3:68708154-68707909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               60, 96
               

               Conread position:
               5-260
               

               Cow position:
               chr3:52608037-52608287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               5-260
               

               Cow position:
               chr3:56059656-56059914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 201
               

               Conread position:
               5-260
               

               Cow position:
               chr3:57577545-57577803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               5-260
               

               Cow position:
               chr3:78077043-78077294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               192, 65
               

               Conread position:
               5-261
               

               Cow position:
               chr3:8060977-8061233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               59, 77
               

               Conread position:
               5-261
               

               Cow position:
               chr3:12705696-12705438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               60, 205
               

               Conread position:
               5-261
               

               Cow position:
               chr3:13301999-13301747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 87
               

               Conread position:
               5-261
               

               Cow position:
               chr3:15153542-15153795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               94, 58
               

               Conread position:
               5-261
               

               Cow position:
               chr3:45667503-45667235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               17, 112
               

               Conread position:
               5-261
               

               Cow position:
               chr3:55177903-55177642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 242
               

               Conread position:
               5-261
               

               Cow position:
               chr3:55712279-55712544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               15, 226
               

               Conread position:
               5-261
               

               Cow position:
               chr3:59884223-59883964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               20, 204
               

               Conread position:
               5-261
               

               Cow position:
               chr3:69416934-69416671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               5-261
               

               Cow position:
               chr3:75080620-75080866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               5-262
               

               Cow position:
               chr3:7331263-7331025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               58, 84
               

               Conread position:
               5-262
               

               Cow position:
               chr3:7337920-7337677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               5-262
               

               Cow position:
               chr3:14601863-14601595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               20, 94
               

               Conread position:
               5-262
               

               Cow position:
               chr3:18393538-18393286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               60, 73
               

               Conread position:
               5-262
               

               Cow position:
               chr3:18686757-18687009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               67, 99
               

               Conread position:
               5-262
               

               Cow position:
               chr3:27274381-27274635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               5-262
               

               Cow position:
               chr3:30179930-30180191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               12, 220
               

               Conread position:
               5-262
               

               Cow position:
               chr3:38035742-38035480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               11, 96
               

               Conread position:
               5-262
               

               Cow position:
               chr3:39970018-39969755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               5-262
               

               Cow position:
               chr3:53790687-53790431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               190
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               59, 119
               

               Conread position:
               5-262
               

               Cow position:
               chr3:59610871-59610610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               62, 75
               

               Conread position:
               5-262
               

               Cow position:
               chr3:70334115-70333861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               10, 98
               

               Conread position:
               5-262
               

               Cow position:
               chr3:76268132-76267868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               5-262
               

               Cow position:
               chr3:80564813-80565072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 126
               

               Conread position:
               5-263
               

               Cow position:
               chr3:29891563-29891297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               11, 216
               

               Conread position:
               5-264
               

               Cow position:
               chr3:73394970-73395223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               11, 103
               

               Conread position:
               5-264
               

               Cow position:
               chr3:75687589-75687327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               15, 102
               

               Conread position:
               5-265
               

               Cow position:
               chr3:23169216-23168956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               55, 138
               

               Conread position:
               5-265
               

               Cow position:
               chr3:44932362-44932621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 196
               

               Conread position:
               5-265
               

               Cow position:
               chr3:50768532-50768788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               66, 103
               

               Conread position:
               5-265
               

               Cow position:
               chr3:68627831-68627578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               5-265
               

               Cow position:
               chr3:70609476-70609735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               88, 170
               

               Conread position:
               5-265
               

               Cow position:
               chr3:74079789-74079529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               59, 177
               

               Conread position:
               5-266
               

               Cow position:
               chr3:6182350-6182116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               256, 47
               

               Conread position:
               5-266
               

               Cow position:
               chr3:19792742-19793016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               14, 212
               

               Conread position:
               5-266
               

               Cow position:
               chr3:48252733-48252995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               20, 80
               

               Conread position:
               5-267
               

               Cow position:
               chr3:11063232-11063476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               5-267
               

               Cow position:
               chr3:17456415-17456158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               11, 66
               

               Conread position:
               5-267
               

               Cow position:
               chr3:18066985-18067244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               60, 113
               

               Conread position:
               5-267
               

               Cow position:
               chr3:49327791-49328052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               54, 109
               

               Conread position:
               5-267
               

               Cow position:
               chr3:53384434-53384169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               5-267
               

               Cow position:
               chr3:73708898-73709156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               59, 47
               

               Conread position:
               5-267
               

               Cow position:
               chr3:74234046-74234294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               5-267
               

               Cow position:
               chr3:77365449-77365178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               18, 183
               

               Conread position:
               5-267
               

               Cow position:
               chr3:79094198-79093930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               57, 125
               

               Conread position:
               5-268
               

               Cow position:
               chr3:32787310-32787571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               60, 20
               

               Conread position:
               5-268
               

               Cow position:
               chr3:52863335-52863070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               12, 98
               

               Conread position:
               5-268
               

               Cow position:
               chr3:55970355-55970619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               20, 93
               

               Conread position:
               5-268
               

               Cow position:
               chr3:75158209-75158468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 124
               

               Conread position:
               5-268
               

               Cow position:
               chr3:79645594-79645317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               18, 48
               

               Conread position:
               5-269
               

               Cow position:
               chr3:210166-210431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               15, 177
               

               Conread position:
               5-269
               

               Cow position:
               chr3:3738338-3738597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               5-269
               

               Cow position:
               chr3:9663322-9663060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               17, 51
               

               Conread position:
               5-269
               

               Cow position:
               chr3:23920580-23920317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 97
               

               Conread position:
               5-269
               

               Cow position:
               chr3:28898373-28898110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               13, 106
               

               Conread position:
               5-269
               

               Cow position:
               chr3:31309505-31309242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               5-269
               

               Cow position:
               chr3:54374010-54373748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               11, 90
               

               Conread position:
               5-269
               

               Cow position:
               chr3:70565888-70565625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 96
               

               Conread position:
               5-269
               

               Cow position:
               chr3:78092656-78092400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               103, 29
               

               Conread position:
               5-270
               

               Cow position:
               chr3:58540679-58540407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               15, 134
               

               Conread position:
               5-270
               

               Cow position:
               chr3:65413430-65413166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               60, 234
               

               Conread position:
               5-270
               

               Cow position:
               chr3:70762273-70762011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               59, 115
               

               Conread position:
               5-271
               

               Cow position:
               chr3:16752403-16752145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               5-271
               

               Cow position:
               chr3:17222294-17222024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               93, 247
               

               Conread position:
               5-271
               

               Cow position:
               chr3:75046028-75045761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               9, 159
               

               Conread position:
               5-271
               

               Cow position:
               chr3:80581513-80581771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               20, 94
               

               Conread position:
               5-272
               

               Cow position:
               chr3:15751872-15751602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               20, 138
               

               Conread position:
               5-272
               

               Cow position:
               chr3:30222035-30222307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               10, 243
               

               Conread position:
               5-272
               

               Cow position:
               chr3:50069614-50069878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               5-272
               

               Cow position:
               chr3:53046809-53046546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               10, 56
               

               Conread position:
               5-273
               

               Cow position:
               chr3:72473761-72474031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               11, 105
               

               Conread position:
               5-274
               

               Cow position:
               chr3:55189906-55189638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               5-277
               

               Cow position:
               chr3:38863965-38864248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               66, 271
               

               Conread position:
               5-277
               

               Cow position:
               chr3:54100872-54100604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               5-279
               

               Cow position:
               chr3:80071976-80072253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 103
               

               Conread position:
               5-281
               

               Cow position:
               chr3:70401752-70402022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               60, 21
               

               Conread position:
               5-281
               

               Cow position:
               chr3:78945983-78945713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               5-284
               

               Cow position:
               chr3:17935084-17934808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               235, 24
               

               Conread position:
               5-284
               

               Cow position:
               chr3:71246874-71247149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               17, 97
               

               Conread position:
               5-285
               

               Cow position:
               chr3:35299515-35299795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 196
               

               Conread position:
               5-287
               

               Cow position:
               chr3:45534446-45534164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               62, 44
               

               Conread position:
               5-287
               

               Cow position:
               chr3:49790961-49790677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               5-287
               

               Cow position:
               chr3:50762978-50763257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               11, 61
               

               Conread position:
               5-287
               

               Cow position:
               chr3:59630652-59630381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               66, 87
               

               Conread position:
               5-287
               

               Cow position:
               chr3:66884091-66883808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               10, 98
               

               Conread position:
               5-294
               

               Cow position:
               chr3:4319564-4319850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               20, 31
               

               Conread position:
               5-296
               

               Cow position:
               chr3:23105516-23105219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               209
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               5-299
               

               Cow position:
               chr3:57764077-57764358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               59, 87
               

               Conread position:
               5-301
               

               Cow position:
               chr3:53150178-53150476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               62, 101
               

               Conread position:
               5-302
               

               Cow position:
               chr3:68586871-68587167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               5-304
               

               Cow position:
               chr3:15506301-15506598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 59
               

               Conread position:
               5-308
               

               Cow position:
               chr3:26874439-26874744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 148
               

               Conread position:
               5-309
               

               Cow position:
               chr3:76713476-76713159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               17, 150
               

               Conread position:
               5-310
               

               Cow position:
               chr3:70899745-70900045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               5-311
               

               Cow position:
               chr3:60265392-60265098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               48, 97
               

               Conread position:
               5-356
               

               Cow position:
               chr3:74242845-74243183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               86, 103
               

               Conread position:
               5-357
               

               Cow position:
               chr3:51604753-51604404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               20, 56
               

               Conread position:
               5-368
               

               Cow position:
               chr3:31037146-31036782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 95
               

               Conread position:
               5-368
               

               Cow position:
               chr3:67544019-67543677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               11, 103
               

               Conread position:
               5-372
               

               Cow position:
               chr3:17447759-17447410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               5-372
               

               Cow position:
               chr3:31850520-31850165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               21, 55
               

               Conread position:
               5-372
               

               Cow position:
               chr3:55272197-55271825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               5-372
               

               Cow position:
               chr3:81371497-81371853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               59, 45
               

               Conread position:
               6-170
               

               Cow position:
               chr3:74409333-74409502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               6-197
               

               Cow position:
               chr3:68145992-68145801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               16, 82
               

               Conread position:
               6-199
               

               Cow position:
               chr3:78896499-78896691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               9, 91
               

               Conread position:
               6-210
               

               Cow position:
               chr3:81277848-81277637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               56, 98
               

               Conread position:
               6-212
               

               Cow position:
               chr3:26553865-26553658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               9, 30
               

               Conread position:
               6-227
               

               Cow position:
               chr3:70895901-70896120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               154, 63
               

               Conread position:
               6-239
               

               Cow position:
               chr3:62046513-62046748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               79, 109
               

               Conread position:
               6-239
               

               Cow position:
               chr3:73915953-73915724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               33, 98
               

               Conread position:
               6-243
               

               Cow position:
               chr3:525201-525434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               92, 59
               

               Conread position:
               6-243
               

               Cow position:
               chr3:9641416-9641656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               6-245
               

               Cow position:
               chr3:26960740-26960498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               14, 209
               

               Conread position:
               6-247
               

               Cow position:
               chr3:116048-116282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               14, 53
               

               Conread position:
               6-247
               

               Cow position:
               chr3:66292326-66292085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               59, 76
               

               Conread position:
               6-254
               

               Cow position:
               chr3:29887571-29887321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               92, 189
               

               Conread position:
               6-257
               

               Cow position:
               chr3:51234246-51233995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 109
               

               Conread position:
               6-257
               

               Cow position:
               chr3:63269074-63269323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               58, 13
               

               Conread position:
               6-258
               

               Cow position:
               chr3:24935221-24935467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               59, 81
               

               Conread position:
               6-265
               

               Cow position:
               chr3:26681947-26681706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               91, 52
               

               Conread position:
               6-265
               

               Cow position:
               chr3:53221865-53222121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               6-266
               

               Cow position:
               chr3:20677984-20677733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               61, 91
               

               Conread position:
               6-267
               

               Cow position:
               chr3:45881760-45882008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               6-267
               

               Cow position:
               chr3:73467473-73467747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               11, 35
               

               Conread position:
               6-269
               

               Cow position:
               chr3:2506626-2506367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               10, 86
               

               Conread position:
               6-271
               

               Cow position:
               chr3:79196610-79196872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               86, 70
               

               Conread position:
               6-274
               

               Cow position:
               chr3:63179711-63179972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               20, 77
               

               Conread position:
               6-287
               

               Cow position:
               chr3:15752780-15752504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               6-287
               

               Cow position:
               chr3:38691557-38691276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               19, 97
               

               Conread position:
               6-287
               

               Cow position:
               chr3:57760349-57760630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               6-293
               

               Cow position:
               chr3:54506560-54506851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               93, 59
               

               Conread position:
               6-302
               

               Cow position:
               chr3:26920759-26921065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               19, 131
               

               Conread position:
               6-372
               

               Cow position:
               chr3:53508472-53508812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               6-372
               

               Cow position:
               chr3:73443236-73442887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 77
               

               Conread position:
               7-199
               

               Cow position:
               chr3:15655296-15655102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               35, 84
               

               Conread position:
               7-206
               

               Cow position:
               chr3:46541976-46541778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               58, 74
               

               Conread position:
               7-230
               

               Cow position:
               chr3:58969048-58968828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               64, 74
               

               Conread position:
               7-230
               

               Cow position:
               chr3:74754180-74754400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               85, 58
               

               Conread position:
               7-231
               

               Cow position:
               chr3:25944933-25945168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               13, 225
               

               Conread position:
               7-231
               

               Cow position:
               chr3:67698131-67698351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               58, 24
               

               Conread position:
               7-257
               

               Cow position:
               chr3:43233359-43233612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 81
               

               Conread position:
               7-262
               

               Cow position:
               chr3:75853479-75853224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               48, 125
               

               Conread position:
               7-268
               

               Cow position:
               chr3:13353213-13353474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               58, 165
               

               Conread position:
               8-169
               

               Cow position:
               chr3:49793256-49793411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               100, 27
               

               Conread position:
               8-200
               

               Cow position:
               chr3:53113026-53113220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               57, 96
               

               Conread position:
               8-244
               

               Cow position:
               chr3:19006516-19006747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               128, 64
               

               Conread position:
               8-250
               

               Cow position:
               chr3:28908349-28908108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               57, 41
               

               Conread position:
               8-262
               

               Cow position:
               chr3:73460824-73461073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               94, 12
               

               Conread position:
               8-262
               

               Cow position:
               chr3:77188290-77188548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               8, 99
               

               Conread position:
               8-263
               

               Cow position:
               chr3:31206725-31206988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 77
               

               Conread position:
               8-264
               

               Cow position:
               chr3:83474598-83474854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               89, 50
               

               Conread position:
               8-268
               

               Cow position:
               chr3:39661600-39661346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               12, 59
               

               Conread position:
               8-269
               

               Cow position:
               chr3:5366623-5366880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               57, 94
               

               Conread position:
               8-271
               

               Cow position:
               chr3:67930329-67930071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               56, 10
               

               Conread position:
               8-275
               

               Cow position:
               chr3:53318256-53318519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               8, 91
               

               Conread position:
               8-287
               

               Cow position:
               chr3:5100914-5100640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               51, 96
               

               Conread position:
               8-287
               

               Cow position:
               chr3:48296562-48296829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               60, 96
               

               Conread position:
               8-295
               

               Cow position:
               chr3:59473973-59474265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               54, 102
               

               Conread position:
               9-197
               

               Cow position:
               chr3:31047097-31046910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               9-245
               

               Cow position:
               chr3:48362938-48363162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               192, 54
               

               Conread position:
               9-245
               

               Cow position:
               chr3:82019985-82019749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               55, 21
               

               Conread position:
               9-258
               

               Cow position:
               chr3:3883965-3883712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               56, 196
               

               Conread position:
               9-263
               

               Cow position:
               chr3:36375690-36375434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 53
               

               Conread position:
               9-265
               

               Cow position:
               chr3:34871422-34871677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 49
               

               Conread position:
               9-277
               

               Cow position:
               chr3:53739332-53739062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               55, 92
               

               Conread position:
               9-285
               

               Cow position:
               chr3:62789326-62789045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               9-323
               

               Cow position:
               chr3:12712065-12711746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               227
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               16, 101
               

               Conread position:
               10-168
               

               Cow position:
               chr3:75105230-75105070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 13
               

               Conread position:
               10-258
               

               Cow position:
               chr3:60264860-60264613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               191, 9
               

               Conread position:
               12-256
               

               Cow position:
               chr3:74533209-74533450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               12-287
               

               Cow position:
               chr3:1785385-1785114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               74, 94
               

               Conread position:
               13-199
               

               Cow position:
               chr3:14633128-14632939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               51, 25
               

               Conread position:
               14-144
               

               Cow position:
               chr3:19789254-19789125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               103
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               50, 36
               

               Conread position:
               14-198
               

               Cow position:
               chr3:5097065-5097250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               50, 93
               

               Conread position:
               14-199
               

               Cow position:
               chr3:11711820-11712009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               14-199
               

               Cow position:
               chr3:74878730-74878545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               53, 87
               

               Conread position:
               14-243
               

               Cow position:
               chr3:73237053-73237284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               53, 39
               

               Conread position:
               14-248
               

               Cow position:
               chr3:5365536-5365769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               51, 89
               

               Conread position:
               14-257
               

               Cow position:
               chr3:3889708-3889468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               97, 55
               

               Conread position:
               14-258
               

               Cow position:
               chr3:80053680-80053441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               51, 89
               

               Conread position:
               14-261
               

               Cow position:
               chr3:76155846-76156093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               51, 82
               

               Conread position:
               14-262
               

               Cow position:
               chr3:17331585-17331828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               50, 130
               

               Conread position:
               14-266
               

               Cow position:
               chr3:71238332-71238581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               53, 94
               

               Conread position:
               14-267
               

               Cow position:
               chr3:44101830-44102076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               52, 78
               

               Conread position:
               14-269
               

               Cow position:
               chr3:73820511-73820253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               58, 115
               

               Conread position:
               14-270
               

               Cow position:
               chr3:65969020-65969282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               50, 94
               

               Conread position:
               15-239
               

               Cow position:
               chr3:74584077-74584291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               15-243
               

               Cow position:
               chr3:83815930-83815700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               50, 183
               

               Conread position:
               15-262
               

               Cow position:
               chr3:78093524-78093282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               50, 88
               

               Conread position:
               15-266
               

               Cow position:
               chr3:71497282-71497025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               15-269
               

               Cow position:
               chr3:72390945-72391197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 87
               

               Conread position:
               15-275
               

               Cow position:
               chr3:18426840-18426593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               52, 87
               

               Conread position:
               15-281
               

               Cow position:
               chr3:49382812-49383076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 35
               

               Conread position:
               16-306
               

               Cow position:
               chr3:83455289-83455005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               88, 118
               

               Conread position:
               23-269
               

               Cow position:
               chr3:7661720-7661966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               41, 147
               

               Conread position:
               24-236
               

               Cow position:
               chr3:20993680-20993894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               43, 52
               

               Conread position:
               24-244
               

               Cow position:
               chr3:61116989-61116764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               19, 86
               

               Conread position:
               24-257
               

               Cow position:
               chr3:14552747-14552977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               177, 80
               

               Conread position:
               24-260
               

               Cow position:
               chr3:22509895-22510132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               41, 82
               

               Conread position:
               24-262
               

               Cow position:
               chr3:15228950-15228717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               61, 80
               

               Conread position:
               24-267
               

               Cow position:
               chr3:15443861-15443617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               41, 128
               

               Conread position:
               24-267
               

               Cow position:
               chr3:15954218-15953973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               41, 86
               

               Conread position:
               24-267
               

               Cow position:
               chr3:70334826-70334583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               43, 85
               

               Conread position:
               24-269
               

               Cow position:
               chr3:6689870-6690112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               42, 83
               

               Conread position:
               24-271
               

               Cow position:
               chr3:29596262-29596504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 25
               

               Conread position:
               24-273
               

               Cow position:
               chr3:66900867-66900617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 199
               

               Conread position:
               24-285
               

               Cow position:
               chr3:14263263-14263522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               41, 115
               

               Conread position:
               24-287
               

               Cow position:
               chr3:84175957-84175692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 221
               

               Conread position:
               24-290
               

               Cow position:
               chr3:37041283-37041552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               43, 221
               

               Conread position:
               24-309
               

               Cow position:
               chr3:71231266-71231551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               5, 79
               

               Conread position:
               24-372
               

               Cow position:
               chr3:59621776-59621440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               177, 76
               

               Conread position:
               25-268
               

               Cow position:
               chr3:59034907-59035151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 225
               

               Conread position:
               26-244
               

               Cow position:
               chr3:74846839-74846620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               14, 9
               

               Conread position:
               26-255
               

               Cow position:
               chr3:18607542-18607770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 9
               

               Conread position:
               26-283
               

               Cow position:
               chr3:34270786-34271044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               39, 82
               

               Conread position:
               26-290
               

               Cow position:
               chr3:32457071-32457324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               39, 72
               

               Conread position:
               27-244
               

               Cow position:
               chr3:54740017-54739798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               35, 149
               

               Conread position:
               27-256
               

               Cow position:
               chr3:73298958-73299180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               27-265
               

               Cow position:
               chr3:17058669-17058438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 69
               

               Conread position:
               29-267
               

               Cow position:
               chr3:21015087-21014844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               36, 178
               

               Conread position:
               30-258
               

               Cow position:
               chr3:59604725-59604944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               174
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               30-261
               

               Cow position:
               chr3:54290635-54290406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               72, 25
               

               Conread position:
               32-273
               

               Cow position:
               chr3:10103924-10104156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               30, 59
               

               Conread position:
               36-262
               

               Cow position:
               chr3:15951031-15950810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               36-263
               

               Cow position:
               chr3:54050139-54049920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               198, 29
               

               Conread position:
               38-269
               

               Cow position:
               chr3:69785741-69785509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               112, 26
               

               Conread position:
               39-269
               

               Cow position:
               chr3:3656394-3656627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               14, 71
               

               Conread position:
               39-372
               

               Cow position:
               chr3:6520090-6519767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               252
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               26, 14
               

               Conread position:
               39-372
               

               Cow position:
               chr3:63177362-63177691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 201
               

               Conread position:
               40-218
               

               Cow position:
               chr3:12670729-12670552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               68, 59
               

               Conread position:
               45-372
               

               Cow position:
               chr3:10677743-10677443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               47-279
               

               Cow position:
               chr3:55983986-55984220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 142
               

               Conread position:
               48-259
               

               Cow position:
               chr3:1036918-1037125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               9, 58
               

               Conread position:
               48-309
               

               Cow position:
               chr3:9116920-9117187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               19, 43
               

               Conread position:
               49-199
               

               Cow position:
               chr3:27545928-27545775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               49-262
               

               Cow position:
               chr3:31361312-31361532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               18, 7
               

               Conread position:
               50-267
               

               Cow position:
               chr3:22165523-22165306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               15, 121
               

               Conread position:
               50-275
               

               Cow position:
               chr3:3316918-3316699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               17, 53
               

               Conread position:
               52-309
               

               Cow position:
               chr3:75238354-75238613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               15, 63
               

               Conread position:
               53-265
               

               Cow position:
               chr3:19626612-19626400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               12, 151
               

               Conread position:
               57-262
               

               Cow position:
               chr3:4548918-4549132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               40, 194
               

               Conread position:
               57-271
               

               Cow position:
               chr3:32409116-32409329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               182, 15
               

               Conread position:
               59-199
               

               Cow position:
               chr3:19162517-19162655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               39, 79
               

               Conread position:
               59-239
               

               Cow position:
               chr3:64135618-64135802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               63-244
               

               Cow position:
               chr3:3471947-3472129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               42, 66
               

               Conread position:
               63-268
               

               Cow position:
               chr3:49363024-49363219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               63-281
               

               Cow position:
               chr3:2067802-2068022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               48, 19
               

               Conread position:
               64-256
               

               Cow position:
               chr3:71474498-71474306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 176
               

               Conread position:
               64-258
               

               Cow position:
               chr3:74088789-74088598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               137, 40
               

               Conread position:
               65-235
               

               Cow position:
               chr3:31350194-31350024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               66-271
               

               Cow position:
               chr3:74900726-74900527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               70-267
               

               Cow position:
               chr3:64196740-64196934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               27, 177
               

               Conread position:
               70-275
               

               Cow position:
               chr3:47753140-47753346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               70-278
               

               Cow position:
               chr3:19682608-19682818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               27, 149
               

               Conread position:
               70-285
               

               Cow position:
               chr3:22716385-22716170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               32, 183
               

               Conread position:
               71-215
               

               Cow position:
               chr3:478883-478740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               25, 100
               

               Conread position:
               71-236
               

               Cow position:
               chr3:75608414-75608579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 91
               

               Conread position:
               71-262
               

               Cow position:
               chr3:10668962-10668771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               143, 34
               

               Conread position:
               71-262
               

               Cow position:
               chr3:59299493-59299681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               116, 33
               

               Conread position:
               71-363
               

               Cow position:
               chr3:44330521-44330229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               224, 171
               

               Conread position:
               72-254
               

               Cow position:
               chr3:3478338-3478156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               39, 98
               

               Conread position:
               72-257
               

               Cow position:
               chr3:54982163-54981977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               43, 111
               

               Conread position:
               72-329
               

               Cow position:
               chr3:4480858-4481114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               26, 70
               

               Conread position:
               85-287
               

               Cow position:
               chr3:61467260-61467061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               92-315
               

               Cow position:
               chr3:28258034-28258251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               205, 15
               

               Conread position:
               94-287
               

               Cow position:
               chr3:9588703-9588512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               163, 26
               

               Conread position:
               95-235
               

               Cow position:
               chr3:71703418-71703555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               101-264
               

               Cow position:
               chr3:38100087-38100250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               80, 143
               

               Conread position:
               102-267
               

               Cow position:
               chr3:53084041-53083874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               104-250
               

               Cow position:
               chr3:44961055-44960910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               104-260
               

               Cow position:
               chr3:49344642-49344799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               107-245
               

               Cow position:
               chr3:51349775-51349913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-248
               

               Cow position:
               chr3:3946990-3947131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-262
               

               Cow position:
               chr3:68004750-68004596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               149, 140
               

               Conread position:
               107-265
               

               Cow position:
               chr3:75107726-75107881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               107-286
               

               Cow position:
               chr3:20333959-20334144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               107-287
               

               Cow position:
               chr3:21997836-21997656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-289
               

               Cow position:
               chr3:23132217-23132038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               107-360
               

               Cow position:
               chr3:82629268-82629512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               108-274
               

               Cow position:
               chr3:26603602-26603435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               43, 140
               

               Conread position:
               108-277
               

               Cow position:
               chr3:5305751-5305917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               109-249
               

               Cow position:
               chr3:41652330-41652470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               111-285
               

               Cow position:
               chr3:64648448-64648620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               91, 96
               

               Conread position:
               123-372
               

               Cow position:
               chr3:24371890-24372123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               126-243
               

               Cow position:
               chr3:16601413-16601530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               91
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               133-361
               

               Cow position:
               chr3:78201588-78201806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               68, 89
               

               Conread position:
               134-280
               

               Cow position:
               chr3:76415924-76415779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               106
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               141-372
               

               Cow position:
               chr3:35285029-35285263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               144-363
               

               Cow position:
               chr3:26973451-26973231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               68, 57
               

               Conread position:
               147-372
               

               Cow position:
               chr3:28556170-28555951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               147-372
               

               Cow position:
               chr3:83504187-83504405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               103, 54
               

               Conread position:
               153-372
               

               Cow position:
               chr3:27670411-27670643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               213-368
               

               Cow position:
               chr3:29452736-29452581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               81, 41
               
Show alignments to all cow chromosomes.
Conread position:	1-131
Cow position:	chr3:35283248-35283113 (view UCSC Genome Browser custom track)
Alignm length:	136
Alignm identity:	103
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	61, 0
Conread position:	1-135
Cow position:	chr3:61191078-61190944 (view UCSC Genome Browser custom track)
Alignm length:	136
Alignm identity:	103
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	107, 93
Conread position:	1-160
Cow position:	chr3:2396933-2396773 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	128
Alignm E-value:	8e-31
Alignm gaps (pig, cow):	64, 71
Conread position:	1-212
Cow position:	chr3:34937689-34937901 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	156
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	64, 170
Conread position:	1-230
Cow position:	chr3:59101674-59101902 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	158
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	24, 158
Conread position:	1-238
Cow position:	chr3:74600957-74601197 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	175
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	66, 0
Conread position:	1-245
Cow position:	chr3:68616479-68616240 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	188
Alignm E-value:	3.00018e-42
Alignm gaps (pig, cow):	65, 48
Conread position:	1-249
Cow position:	chr3:67744777-67744534 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	167
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	86, 71
Conread position:	1-255
Cow position:	chr3:56476526-56476780 (view UCSC Genome Browser custom track)
Alignm length:	257
Alignm identity:	182
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	85, 248
Conread position:	1-257
Cow position:	chr3:55835979-55835716 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	190
Alignm E-value:	8.00001e-41
Alignm gaps (pig, cow):	66, 0
Conread position:	1-261
Cow position:	chr3:83442036-83441788 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	178
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	69, 100
Conread position:	1-262
Cow position:	chr3:11987173-11987436 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	185
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	15, 104
Conread position:	1-265
Cow position:	chr3:10958397-10958132 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	196
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 249
Conread position:	1-266
Cow position:	chr3:3985173-3985432 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	186
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	56, 107
Conread position:	1-269
Cow position:	chr3:24468533-24468273 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	185
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	64, 97
Conread position:	1-279
Cow position:	chr3:48810791-48810524 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	190
Alignm E-value:	9e-32
Alignm gaps (pig, cow):	79, 0
Conread position:	1-341
Cow position:	chr3:13507312-13507644 (view UCSC Genome Browser custom track)
Alignm length:	343
Alignm identity:	245
Alignm E-value:	0
Alignm gaps (pig, cow):	97, 247
Conread position:	1-372
Cow position:	chr3:57624309-57624678 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	257
Alignm E-value:	9.94922e-44
Alignm gaps (pig, cow):	25, 36
Conread position:	2-197
Cow position:	chr3:12978770-12978576 (view UCSC Genome Browser custom track)
Alignm length:	199
Alignm identity:	138
Alignm E-value:	9e-22
Alignm gaps (pig, cow):	16, 105
Conread position:	2-279
Cow position:	chr3:33329660-33329943 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	187
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	63, 0