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Cow genome map

           
Conread name:
           
Ss1.1-rpigcf0_016288.5
        

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:20709971-20710161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 81
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chrX:43567818-43568013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chrX:31515065-31515269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chrX:43779951-43779752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chrX:26440883-26440681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:20584220-20584462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:29120942-29121181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chrX:37119491-37119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chrX:41879036-41878771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chrX:5017518-5017255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chrX:169644-169379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chrX:38654534-38654270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chrX:40269384-40269669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chrX:40557785-40557496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chrX:42235632-42235317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chrX:47484369-47484100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 221
               

               
Conread position:
               
5-125
               

               
Cow position:
               
chrX:4750404-4750282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
5-137
               

               
Cow position:
               
chrX:38439378-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
5-159
               

               
Cow position:
               
chrX:28845730-28845888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
5-167
               

               
Cow position:
               
chrX:41743811-41743977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
5-168
               

               
Cow position:
               
chrX:26875983-26875817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
5-169
               

               
Cow position:
               
chrX:12018190-12018357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
5-171
               

               
Cow position:
               
chrX:19003200-19003363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
5-180
               

               
Cow position:
               
chrX:11589688-11589512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
5-191
               

               
Cow position:
               
chrX:17541864-17542047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chrX:33000803-33000998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 175
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chrX:34543686-34543877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chrX:45403930-45403732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chrX:45875291-45875485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chrX:27680299-27680493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chrX:27685147-27685344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chrX:21642578-21642386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chrX:37843620-37843813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chrX:39126233-39126422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chrX:7509042-7509236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
56, 166
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chrX:1499565-1499772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 97
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chrX:10959497-10959287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chrX:21004582-21004792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chrX:21566302-21566515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chrX:26625770-26625563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chrX:47362711-47362503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chrX:23563893-23563665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chrX:37574751-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chrX:38066550-38066324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chrX:27432014-27431786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:11939027-11938801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chrX:29229910-29230132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:6544156-6544389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
60, 166
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:7161960-7162191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:8925601-8925834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:19273822-19273572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:33539065-33539305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:35224196-35224432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chrX:37232313-37232542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chrX:34315425-34315657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chrX:39558450-39558210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 190
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chrX:41122967-41123198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chrX:45845999-45846241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chrX:46072920-46072678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 202
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chrX:1503238-1503467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chrX:14884058-14883816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 239
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chrX:17662693-17662458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chrX:34565183-34565423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chrX:29289480-29289719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chrX:45414400-45414153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 97
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chrX:31442922-31442679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chrX:11073290-11073038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chrX:30543387-30543134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
5-257
               

               
Cow position:
               
chrX:34313929-34314175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
5-258
               

               
Cow position:
               
chrX:21986392-21986138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
61, 144
               

               
Conread position:
               
5-258
               

               
Cow position:
               
chrX:34792408-34792159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 98
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chrX:9651125-9650869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
56, 237
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chrX:37072308-37072542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
196, 52
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chrX:15231758-15231500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chrX:37781211-37780952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chrX:45430116-45429865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
247, 54
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chrX:5919396-5919652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
92, 49
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chrX:14275834-14275586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chrX:38094623-38094364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 120
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:17794883-17795141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 53
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:17888514-17888265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 27
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:24424488-24424245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:27145523-27145760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:29544978-29544721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:31729343-31729598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chrX:35542795-35543045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chrX:11844347-11844078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chrX:22921216-22921483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 90
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chrX:45174749-45175010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chrX:4403214-4403480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chrX:11655992-11656240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chrX:34505147-34504891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chrX:40685431-40685167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chrX:42927919-42927665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
62, 98
               

               
Conread position:
               
5-265
               

               
Cow position:
               
chrX:43115052-43115309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chrX:13177565-13177318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 45
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chrX:29601930-29601666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:3579844-3580107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:5118602-5118336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 242
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:6260258-6259987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:8869502-8869242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:12309486-12309223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:12979927-12979673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
91, 54
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:13647885-13647622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:22074700-22074959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:24365927-24365662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 202
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:29542319-29542066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 194
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:31252318-31252568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 96
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:34376847-34377101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 41
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:41027057-41027322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chrX:42381202-42380948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chrX:27946159-27945892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 220
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chrX:40826854-40826589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 115
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chrX:10831593-10831319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 225
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chrX:14599433-14599695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 78
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chrX:20677270-20677529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chrX:42247285-42247019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chrX:38006864-38006606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chrX:26881668-26881399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 247
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chrX:27119599-27119859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chrX:31294657-31294407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chrX:21327803-21328083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 253
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chrX:4043952-4043694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chrX:38853098-38853373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chrX:46291038-46291303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chrX:13382229-13382499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
13, 154
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chrX:37910346-37910614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chrX:32820928-32821202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chrX:18204563-18204288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chrX:33639871-33640153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 210
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chrX:6690357-6690089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chrX:7695648-7695925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chrX:18695023-18694756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
5-281
               

               
Cow position:
               
chrX:23514115-23513845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chrX:41526621-41526350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
98, 89
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chrX:619104-618830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chrX:40480969-40480688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chrX:27394119-27393846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chrX:42171396-42171117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
60, 199
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chrX:616362-616077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 97
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chrX:16348670-16348392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chrX:31311929-31312212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chrX:29680360-29680076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chrX:9635281-9635005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chrX:36975849-36976136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chrX:39415467-39415188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chrX:15007250-15006961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
5-295
               

               
Cow position:
               
chrX:9365775-9365485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 101
               

               
Conread position:
               
5-302
               

               
Cow position:
               
chrX:4399029-4399320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chrX:30133422-30133119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 202
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:34441552-34441247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 102
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:40035542-40035233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chrX:44396919-44397217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chrX:8797152-8797460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chrX:11085157-11084852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chrX:7718756-7719091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
164, 85
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chrX:12290626-12290957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:27516428-27516790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chrX:29194134-29194495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 49
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chrX:878477-878127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chrX:17725874-17726238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 234
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chrX:41884514-41884151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 240
               

               
Conread position:
               
6-150
               

               
Cow position:
               
chrX:34990936-34991082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
6-154
               

               
Cow position:
               
chrX:19015339-19015487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
99, 59
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chrX:11856329-11856523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chrX:7277820-7278043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
195, 16
               

               
Conread position:
               
6-244
               

               
Cow position:
               
chrX:14973840-14973606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 100
               

               
Conread position:
               
6-244
               

               
Cow position:
               
chrX:37986134-37986365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chrX:45110557-45110797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 101
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chrX:42470040-42469792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chrX:1616143-1615895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
6-261
               

               
Cow position:
               
chrX:10516157-10516414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chrX:34411743-34412004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
6-263
               

               
Cow position:
               
chrX:8917297-8917557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
6-265
               

               
Cow position:
               
chrX:22482785-22482529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
87, 53
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chrX:28878270-28878006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
6-281
               

               
Cow position:
               
chrX:34401899-34402176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
6-295
               

               
Cow position:
               
chrX:36067916-36068210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chrX:27772060-27771772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chrX:43730317-43729961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 61
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chrX:47122908-47123268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
7-187
               

               
Cow position:
               
chrX:13785461-13785280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
58, 166
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chrX:9201452-9201694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 92
               

               
Conread position:
               
7-257
               

               
Cow position:
               
chrX:41870975-41871221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
7-268
               

               
Cow position:
               
chrX:33493680-33493941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chrX:24331680-24331939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chrX:45670129-45670387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
8-199
               

               
Cow position:
               
chrX:7571807-7572000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chrX:31436381-31436630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chrX:38218614-38218874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
8-263
               

               
Cow position:
               
chrX:842059-842321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
8-266
               

               
Cow position:
               
chrX:31949033-31948773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 67
               

               
Conread position:
               
8-267
               

               
Cow position:
               
chrX:31489425-31489681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chrX:27174898-27175161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 128
               

               
Conread position:
               
8-273
               

               
Cow position:
               
chrX:6278599-6278325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chrX:9252256-9251979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chrX:5679663-5679387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
9-260
               

               
Cow position:
               
chrX:34837150-34836912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
192, 26
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chrX:12095870-12095611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chrX:20339985-20339731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chrX:34532425-34532680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 0
               

               
Conread position:
               
9-275
               

               
Cow position:
               
chrX:34502826-34503090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chrX:41271087-41270795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chrX:7646161-7646396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
160, 43
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chrX:38560462-38560699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
11-257
               

               
Cow position:
               
chrX:33855327-33855069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
54, 201
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chrX:20168464-20168720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
11-269
               

               
Cow position:
               
chrX:47345240-47345492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
12-265
               

               
Cow position:
               
chrX:6413955-6414200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
12-269
               

               
Cow position:
               
chrX:31250293-31250551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
13-164
               

               
Cow position:
               
chrX:45648781-45648934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
13-195
               

               
Cow position:
               
chrX:161321-161503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
13-245
               

               
Cow position:
               
chrX:41068629-41068866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-259
               

               
Cow position:
               
chrX:44054715-44054961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
13-265
               

               
Cow position:
               
chrX:1466069-1466322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 231
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chrX:37129177-37129455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
14-250
               

               
Cow position:
               
chrX:43527419-43527654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
14-259
               

               
Cow position:
               
chrX:23113186-23113441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
14-261
               

               
Cow position:
               
chrX:29050156-29050405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 150
               

               
Conread position:
               
14-262
               

               
Cow position:
               
chrX:918818-918557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 178
               

               
Conread position:
               
14-262
               

               
Cow position:
               
chrX:46587729-46587982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
14-266
               

               
Cow position:
               
chrX:45976831-45977086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 198
               

               
Conread position:
               
14-266
               

               
Cow position:
               
chrX:46433400-46433652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chrX:27261097-27261353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
14-267
               

               
Cow position:
               
chrX:27705496-27705749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
14-269
               

               
Cow position:
               
chrX:25035471-25035219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
14-269
               

               
Cow position:
               
chrX:27228037-27228291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
14-276
               

               
Cow position:
               
chrX:22387333-22387081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
14-281
               

               
Cow position:
               
chrX:5872230-5872492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
181, 86
               

               
Conread position:
               
15-262
               

               
Cow position:
               
chrX:7710628-7710380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
15-272
               

               
Cow position:
               
chrX:42855365-42855626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
18-257
               

               
Cow position:
               
chrX:11318054-11317811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
23-262
               

               
Cow position:
               
chrX:41192626-41192860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
23-280
               

               
Cow position:
               
chrX:5135607-5135346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 189
               

               
Conread position:
               
23-283
               

               
Cow position:
               
chrX:48014353-48014618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
24-200
               

               
Cow position:
               
chrX:4296900-4296729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
24-239
               

               
Cow position:
               
chrX:18273139-18272924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
24-255
               

               
Cow position:
               
chrX:41238432-41238204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
24-257
               

               
Cow position:
               
chrX:11614619-11614847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
24-262
               

               
Cow position:
               
chrX:17231653-17231898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
24-263
               

               
Cow position:
               
chrX:17949568-17949330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
24-267
               

               
Cow position:
               
chrX:40680530-40680777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
24-271
               

               
Cow position:
               
chrX:151824-152067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
24-290
               

               
Cow position:
               
chrX:11633599-11633866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 180
               

               
Conread position:
               
24-310
               

               
Cow position:
               
chrX:11455128-11454843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 152
               

               
Conread position:
               
25-254
               

               
Cow position:
               
chrX:36514974-36514743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 191
               

               
Conread position:
               
25-277
               

               
Cow position:
               
chrX:39220000-39220248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
26-162
               

               
Cow position:
               
chrX:5677971-5677832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
26-267
               

               
Cow position:
               
chrX:22115396-22115153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
26-271
               

               
Cow position:
               
chrX:25815985-25815737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 182
               

               
Conread position:
               
26-309
               

               
Cow position:
               
chrX:38549368-38549652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
26-372
               

               
Cow position:
               
chrX:23562556-23562889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 73
               

               
Conread position:
               
27-255
               

               
Cow position:
               
chrX:4153113-4152882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
38, 225
               

               
Conread position:
               
27-262
               

               
Cow position:
               
chrX:4515606-4515849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 176
               

               
Conread position:
               
27-262
               

               
Cow position:
               
chrX:35885805-35885571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
30-257
               

               
Cow position:
               
chrX:19469575-19469353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
31-372
               

               
Cow position:
               
chrX:11717862-11717501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
32-265
               

               
Cow position:
               
chrX:1088209-1087986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chrX:32623498-32623744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 202
               

               
Conread position:
               
38-236
               

               
Cow position:
               
chrX:12082392-12082192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 131
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chrX:15820530-15820769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
42-245
               

               
Cow position:
               
chrX:32208883-32208682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
167, 11
               

               
Conread position:
               
42-289
               

               
Cow position:
               
chrX:4037235-4036981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
43-267
               

               
Cow position:
               
chrX:20957186-20957401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
45-244
               

               
Cow position:
               
chrX:46429881-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
45-258
               

               
Cow position:
               
chrX:27511367-27511582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
47-262
               

               
Cow position:
               
chrX:16984574-16984796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
48-258
               

               
Cow position:
               
chrX:23091811-23092027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
49-270
               

               
Cow position:
               
chrX:13913013-13913240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
51-271
               

               
Cow position:
               
chrX:35985764-35985982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 107
               

               
Conread position:
               
56-230
               

               
Cow position:
               
chrX:29585073-29585245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
58-267
               

               
Cow position:
               
chrX:28940200-28940406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
60-281
               

               
Cow position:
               
chrX:40532087-40531866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-199
               

               
Cow position:
               
chrX:44095218-44095355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
63-265
               

               
Cow position:
               
chrX:22393026-22392826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 166
               

               
Conread position:
               
63-267
               

               
Cow position:
               
chrX:24749047-24749251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
178, 106
               

               
Conread position:
               
64-273
               

               
Cow position:
               
chrX:29553246-29553453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
65-257
               

               
Cow position:
               
chrX:11326138-11325946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 148
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chrX:6599822-6599621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
65-267
               

               
Cow position:
               
chrX:19394514-19394717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
70-267
               

               
Cow position:
               
chrX:38642216-38642409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
76-287
               

               
Cow position:
               
chrX:20743575-20743786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
77-372
               

               
Cow position:
               
chrX:4616035-4615747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
88-257
               

               
Cow position:
               
chrX:16836303-16836136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chrX:32943093-32942913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
90-258
               

               
Cow position:
               
chrX:12972668-12972839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
94-372
               

               
Cow position:
               
chrX:18046390-18046660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
102-260
               

               
Cow position:
               
chrX:2935955-2936110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
107-244
               

               
Cow position:
               
chrX:4466970-4467107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-310
               

               
Cow position:
               
chrX:38587840-38587638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
177, 184
               

               
Conread position:
               
108-265
               

               
Cow position:
               
chrX:27668954-27668799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
108-287
               

               
Cow position:
               
chrX:12191765-12191943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
142, 62
               

               
Conread position:
               
114-290
               

               
Cow position:
               
chrX:23266425-23266600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
115-252
               

               
Cow position:
               
chrX:29467767-29467630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
118-368
               

               
Cow position:
               
chrX:35387910-35387658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
120-265
               

               
Cow position:
               
chrX:20583682-20583825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
122-281
               

               
Cow position:
               
chrX:34508562-34508721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
129-261
               

               
Cow position:
               
chrX:32866900-32867032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-293
               

               
Cow position:
               
chrX:41939853-41940011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
152-372
               

               
Cow position:
               
chrX:42482786-42482566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
153-368
               

               
Cow position:
               
chrX:2742292-2742084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chrX:23187539-23187327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
255-372
               

               
Cow position:
               
chrX:1385300-1385418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 69
               
Show alignments to all cow chromosomes.