Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-121
Cow position:
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 1-139
Cow position:
Alignm length: 139
Alignm identity: 115
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 100, 0

Conread position: 1-191
Cow position:
Alignm length: 197
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 60

Conread position: 1-192
Cow position:
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 11

Conread position: 1-218
Cow position:
Alignm length: 224
Alignm identity: 175
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 32, 65

Conread position: 1-247
Cow position:
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 78

Conread position: 1-267
Cow position:
Alignm length: 276
Alignm identity: 187
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 37, 199

Conread position: 1-281
Cow position:
Alignm length: 301
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 29, 194

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 126

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 152

Conread position: 1-289
Cow position:
Alignm length: 292
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 59

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 126

Conread position: 1-296
Cow position:
Alignm length: 300
Alignm identity: 193
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 254, 71

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 132

Conread position: 1-317
Cow position:
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 36

Conread position: 1-317
Cow position:
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 17

Conread position: 1-319
Cow position:
Alignm length: 329
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 96

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 215
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 41

Conread position: 1-324
Cow position:
Alignm length: 333
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-330
Cow position:
Alignm length: 342
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-334
Cow position:
Alignm length: 349
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 57

Conread position: 1-336
Cow position:
Alignm length: 347
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 184

Conread position: 1-337
Cow position:
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 242

Conread position: 1-340
Cow position:
Alignm length: 350
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 167

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 126

Conread position: 1-342
Cow position:
Alignm length: 354
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 1-343
Cow position:
Alignm length: 358
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 138

Conread position: 1-344
Cow position:
Alignm length: 358
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 93

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 173

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-352
Cow position:
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 220

Conread position: 1-352
Cow position:
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 296

Conread position: 1-358
Cow position:
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 1-358
Cow position:
Alignm length: 372
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 1-359
Cow position:
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 67

Conread position: 1-404
Cow position:
Alignm length: 418
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 38

Conread position: 1-404
Cow position:
Alignm length: 411
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 87

Conread position: 1-405
Cow position:
Alignm length: 411
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 15

Conread position: 2-196
Cow position:
Alignm length: 195
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 2-313
Cow position:
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 16

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 10

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 16

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 13

Conread position: 2-321
Cow position:
Alignm length: 337
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 9

Conread position: 2-361
Cow position:
Alignm length: 362
Alignm identity: 246
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 320, 40

Conread position: 7-133
Cow position:
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 9

Conread position: 7-343
Cow position:
Alignm length: 342
Alignm identity: 232
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 283, 32

Conread position: 7-373
Cow position:
Alignm length: 376
Alignm identity: 261
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 11

Conread position: 7-405
Cow position:
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 24

Conread position: 8-252
Cow position:
Alignm length: 250
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 8-398
Cow position:
Alignm length: 400
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 8

Conread position: 10-287
Cow position:
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 17-247
Cow position:
Alignm length: 232
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 122

Conread position: 17-289
Cow position:
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 88

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 17-348
Cow position:
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 20-324
Cow position:
Alignm length: 311
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 135

Conread position: 20-380
Cow position:
Alignm length: 377
Alignm identity: 251
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 34

Conread position: 21-275
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 21-332
Cow position:
Alignm length: 317
Alignm identity: 205
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 20, 82

Conread position: 21-359
Cow position:
Alignm length: 348
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 30

Conread position: 21-364
Cow position:
Alignm length: 360
Alignm identity: 245
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 90, 34

Conread position: 21-373
Cow position:
Alignm length: 363
Alignm identity: 249
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 112, 28

Conread position: 21-405
Cow position:
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 18

Conread position: 21-565
Cow position:
Alignm length: 555
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 38

Conread position: 22-222
Cow position:
Alignm length: 202
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 5, 42

Conread position: 22-389
Cow position:
Alignm length: 375
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 22-405
Cow position:
Alignm length: 390
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 166

Conread position: 25-405
Cow position:
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 63

Conread position: 26-404
Cow position:
Alignm length: 387
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 229

Conread position: 27-172
Cow position:
Alignm length: 146
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 27-316
Cow position:
Alignm length: 296
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 191

Conread position: 27-317
Cow position:
Alignm length: 295
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 76

Conread position: 27-322
Cow position:
Alignm length: 302
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 137

Conread position: 27-359
Cow position:
Alignm length: 338
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 45

Conread position: 27-380
Cow position:
Alignm length: 362
Alignm identity: 245
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 150, 73

Conread position: 27-417
Cow position:
Alignm length: 402
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 19

Conread position: 28-317
Cow position:
Alignm length: 295
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 0

Conread position: 28-390
Cow position:
Alignm length: 379
Alignm identity: 251
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 38, 32

Conread position: 29-337
Cow position:
Alignm length: 316
Alignm identity: 214
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 128

Conread position: 30-353
Cow position:
Alignm length: 329
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 12

Conread position: 31-238
Cow position:
Alignm length: 208
Alignm identity: 161
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 35-272
Cow position:
Alignm length: 240
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 138, 97

Conread position: 55-361
Cow position:
Alignm length: 316
Alignm identity: 219
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 12, 263

Conread position: 55-379
Cow position:
Alignm length: 337
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 57-361
Cow position:
Alignm length: 314
Alignm identity: 218
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 52

Conread position: 60-364
Cow position:
Alignm length: 315
Alignm identity: 209
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 95, 35

Conread position: 71-389
Cow position:
Alignm length: 320
Alignm identity: 217
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 219, 38

Conread position: 86-320
Cow position:
Alignm length: 240
Alignm identity: 164
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 205, 145

Conread position: 94-323
Cow position:
Alignm length: 241
Alignm identity: 169
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 95, 170

Conread position: 97-565
Cow position:
Alignm length: 475
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 257

Conread position: 103-389
Cow position:
Alignm length: 291
Alignm identity: 189
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 188, 64

Conread position: 104-401
Cow position:
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 58

Conread position: 106-324
Cow position:
Alignm length: 223
Alignm identity: 169
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 184, 15

Conread position: 113-322
Cow position:
Alignm length: 216
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 53

Conread position: 115-320
Cow position:
Alignm length: 211
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 115-336
Cow position:
Alignm length: 229
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 150, 169

Conread position: 123-276
Cow position:
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 101

Conread position: 160-324
Cow position:
Alignm length: 169
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 128, 0

Conread position: 161-393
Cow position:
Alignm length: 241
Alignm identity: 166
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 130, 14

Conread position: 168-326
Cow position:
Alignm length: 166
Alignm identity: 129
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 117, 0

Conread position: 181-480
Cow position:
Alignm length: 309
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 122

Conread position: 192-322
Cow position:
Alignm length: 136
Alignm identity: 111
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 239-405
Cow position:
Alignm length: 172
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 262-510
Cow position:
Alignm length: 254
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 69

Show alignments to all cow chromosomes.