Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-205
Cow position:
Alignm length: 211
Alignm identity: 167
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 36, 120

Conread position: 1-214
Cow position:
Alignm length: 216
Alignm identity: 158
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 189, 15

Conread position: 1-215
Cow position:
Alignm length: 225
Alignm identity: 173
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 32, 56

Conread position: 1-232
Cow position:
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 82

Conread position: 1-263
Cow position:
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 1-267
Cow position:
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 68

Conread position: 1-267
Cow position:
Alignm length: 270
Alignm identity: 183
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 120

Conread position: 1-274
Cow position:
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 1-278
Cow position:
Alignm length: 286
Alignm identity: 171
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 141

Conread position: 1-280
Cow position:
Alignm length: 284
Alignm identity: 206
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 29, 198

Conread position: 1-285
Cow position:
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 231

Conread position: 1-286
Cow position:
Alignm length: 292
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 137

Conread position: 1-286
Cow position:
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 42

Conread position: 1-287
Cow position:
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 1-289
Cow position:
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 93

Conread position: 1-300
Cow position:
Alignm length: 309
Alignm identity: 212
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 9, 123

Conread position: 1-301
Cow position:
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-316
Cow position:
Alignm length: 328
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 68

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-317
Cow position:
Alignm length: 326
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 61

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 307

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-317
Cow position:
Alignm length: 323
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 278

Conread position: 1-317
Cow position:
Alignm length: 325
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-322
Cow position:
Alignm length: 328
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 50

Conread position: 1-322
Cow position:
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 45

Conread position: 1-324
Cow position:
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-324
Cow position:
Alignm length: 342
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 68

Conread position: 1-324
Cow position:
Alignm length: 342
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 77

Conread position: 1-326
Cow position:
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 64

Conread position: 1-330
Cow position:
Alignm length: 335
Alignm identity: 229
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 220

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 71

Conread position: 1-334
Cow position:
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 348

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-334
Cow position:
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 66

Conread position: 1-334
Cow position:
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 216

Conread position: 1-337
Cow position:
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 225

Conread position: 1-340
Cow position:
Alignm length: 350
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-341
Cow position:
Alignm length: 349
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 334

Conread position: 1-343
Cow position:
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 162

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 202

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 91

Conread position: 1-348
Cow position:
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 79

Conread position: 1-348
Cow position:
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 90

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 145

Conread position: 1-348
Cow position:
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 64

Conread position: 1-352
Cow position:
Alignm length: 356
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 292

Conread position: 1-358
Cow position:
Alignm length: 376
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 345

Conread position: 1-359
Cow position:
Alignm length: 368
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 38

Conread position: 1-406
Cow position:
Alignm length: 421
Alignm identity: 280
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 15

Conread position: 1-563
Cow position:
Alignm length: 585
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 137

Conread position: 2-141
Cow position:
Alignm length: 140
Alignm identity: 106
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-307
Cow position:
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 91

Conread position: 3-343
Cow position:
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 91

Conread position: 3-511
Cow position:
Alignm length: 522
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 63

Conread position: 4-222
Cow position:
Alignm length: 220
Alignm identity: 166
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 166, 0

Conread position: 5-333
Cow position:
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 33

Conread position: 5-340
Cow position:
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 7-182
Cow position:
Alignm length: 176
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 138, 0

Conread position: 7-215
Cow position:
Alignm length: 209
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 7-215
Cow position:
Alignm length: 209
Alignm identity: 154
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 7-287
Cow position:
Alignm length: 292
Alignm identity: 191
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 35

Conread position: 7-334
Cow position:
Alignm length: 348
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 14

Conread position: 7-343
Cow position:
Alignm length: 352
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 89

Conread position: 11-341
Cow position:
Alignm length: 342
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 28

Conread position: 16-237
Cow position:
Alignm length: 225
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 158, 22

Conread position: 16-320
Cow position:
Alignm length: 311
Alignm identity: 215
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 219, 17

Conread position: 17-289
Cow position:
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 0

Conread position: 17-317
Cow position:
Alignm length: 307
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 151

Conread position: 17-322
Cow position:
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 0

Conread position: 17-322
Cow position:
Alignm length: 311
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 17-335
Cow position:
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 80

Conread position: 17-342
Cow position:
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 17-348
Cow position:
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 18-262
Cow position:
Alignm length: 249
Alignm identity: 165
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 13

Conread position: 18-364
Cow position:
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 20-287
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 211, 0

Conread position: 21-169
Cow position:
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 59, 69

Conread position: 21-238
Cow position:
Alignm length: 218
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 21-247
Cow position:
Alignm length: 236
Alignm identity: 164
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 150, 30

Conread position: 21-282
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 45

Conread position: 21-388
Cow position:
Alignm length: 376
Alignm identity: 262
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 35, 130

Conread position: 21-405
Cow position:
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 89

Conread position: 22-402
Cow position:
Alignm length: 395
Alignm identity: 252
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 153, 44

Conread position: 25-261
Cow position:
Alignm length: 238
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 26-255
Cow position:
Alignm length: 230
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 27-289
Cow position:
Alignm length: 263
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 27-317
Cow position:
Alignm length: 296
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 86

Conread position: 27-399
Cow position:
Alignm length: 375
Alignm identity: 245
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 131, 102

Conread position: 28-235
Cow position:
Alignm length: 208
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 29-202
Cow position:
Alignm length: 174
Alignm identity: 134
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 31-247
Cow position:
Alignm length: 218
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 146, 14

Conread position: 31-350
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 111, 51

Conread position: 33-165
Cow position:
Alignm length: 135
Alignm identity: 107
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 30

Conread position: 57-384
Cow position:
Alignm length: 337
Alignm identity: 226
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 160

Conread position: 62-334
Cow position:
Alignm length: 276
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 142

Conread position: 68-398
Cow position:
Alignm length: 333
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 163

Conread position: 73-283
Cow position:
Alignm length: 211
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 86-361
Cow position:
Alignm length: 283
Alignm identity: 203
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 141, 123

Conread position: 90-317
Cow position:
Alignm length: 233
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 96

Conread position: 101-324
Cow position:
Alignm length: 234
Alignm identity: 138
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 89

Conread position: 115-373
Cow position:
Alignm length: 271
Alignm identity: 194
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 68, 235

Conread position: 123-289
Cow position:
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 123-343
Cow position:
Alignm length: 227
Alignm identity: 172
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 167, 0

Conread position: 127-317
Cow position:
Alignm length: 196
Alignm identity: 154
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 158, 0

Conread position: 130-289
Cow position:
Alignm length: 160
Alignm identity: 136
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 132-348
Cow position:
Alignm length: 222
Alignm identity: 123
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 158, 0

Conread position: 136-340
Cow position:
Alignm length: 211
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 152, 184

Conread position: 147-565
Cow position:
Alignm length: 429
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 65

Conread position: 181-331
Cow position:
Alignm length: 157
Alignm identity: 127
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 109, 90

Conread position: 204-331
Cow position:
Alignm length: 133
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 84, 124

Conread position: 213-334
Cow position:
Alignm length: 128
Alignm identity: 102
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 289-473
Cow position:
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 295-538
Cow position:
Alignm length: 244
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Show alignments to all cow chromosomes.