Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-263
Cow position:
Alignm length: 270
Alignm identity: 177
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 7

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 1-316
Cow position:
Alignm length: 328
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-317
Cow position:
Alignm length: 329
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 336
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 309

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 263

Conread position: 1-324
Cow position:
Alignm length: 341
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 136

Conread position: 1-334
Cow position:
Alignm length: 349
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 139

Conread position: 1-334
Cow position:
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 99

Conread position: 1-348
Cow position:
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 251

Conread position: 1-350
Cow position:
Alignm length: 363
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 1-352
Cow position:
Alignm length: 360
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 296

Conread position: 1-352
Cow position:
Alignm length: 365
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 95

Conread position: 1-566
Cow position:
Alignm length: 578
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 157

Conread position: 2-234
Cow position:
Alignm length: 233
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-238
Cow position:
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-327
Cow position:
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-226
Cow position:
Alignm length: 227
Alignm identity: 168
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 60

Conread position: 3-322
Cow position:
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 171

Conread position: 3-344
Cow position:
Alignm length: 352
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 5-330
Cow position:
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 115

Conread position: 6-409
Cow position:
Alignm length: 413
Alignm identity: 271
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 64

Conread position: 7-279
Cow position:
Alignm length: 276
Alignm identity: 190
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 114, 47

Conread position: 17-324
Cow position:
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 71

Conread position: 17-332
Cow position:
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 316

Conread position: 20-321
Cow position:
Alignm length: 312
Alignm identity: 212
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 66, 248

Conread position: 20-381
Cow position:
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 19

Conread position: 21-271
Cow position:
Alignm length: 252
Alignm identity: 176
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 9, 147

Conread position: 21-344
Cow position:
Alignm length: 326
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 12

Conread position: 21-405
Cow position:
Alignm length: 390
Alignm identity: 265
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 132, 33

Conread position: 22-389
Cow position:
Alignm length: 372
Alignm identity: 243
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 237, 17

Conread position: 27-305
Cow position:
Alignm length: 285
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 140, 87

Conread position: 27-342
Cow position:
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 224

Conread position: 27-349
Cow position:
Alignm length: 333
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 244

Conread position: 27-352
Cow position:
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 27-392
Cow position:
Alignm length: 369
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 63

Conread position: 27-394
Cow position:
Alignm length: 380
Alignm identity: 248
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 10, 125

Conread position: 32-288
Cow position:
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 135, 29

Conread position: 41-211
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 42-343
Cow position:
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 277

Conread position: 43-324
Cow position:
Alignm length: 287
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 0

Conread position: 55-341
Cow position:
Alignm length: 299
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 171

Conread position: 60-322
Cow position:
Alignm length: 268
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 0

Conread position: 85-393
Cow position:
Alignm length: 316
Alignm identity: 199
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 202, 71

Conread position: 111-233
Cow position:
Alignm length: 123
Alignm identity: 101
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 120-336
Cow position:
Alignm length: 223
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 79

Conread position: 126-342
Cow position:
Alignm length: 224
Alignm identity: 162
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 164, 95

Show alignments to all cow chromosomes.