Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-263 |
| Cow position: | chr12:17128389-17128124 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 1-289 |
| Cow position: | chr12:22205816-22205524 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 1-316 |
| Cow position: | chr12:21426624-21426951 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-317 |
| Cow position: | chr12:3360834-3361161 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-317 |
| Cow position: | chr12:32653475-32653801 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-317 |
| Cow position: | chr12:37558485-37558813 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-324 |
| Cow position: | chr12:2729-3063 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 309 |
| Conread position: | 1-324 |
| Cow position: | chr12:6406718-6406387 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 263 |
| Conread position: | 1-324 |
| Cow position: | chr12:45261548-45261887 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 136 |
| Conread position: | 1-334 |
| Cow position: | chr12:21901870-21902214 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 139 |
| Conread position: | 1-334 |
| Cow position: | chr12:22332550-22332899 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 1-348 |
| Cow position: | chr12:8678192-8677833 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 251 |
| Conread position: | 1-350 |
| Cow position: | chr12:8311116-8311473 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 1-352 |
| Cow position: | chr12:25101131-25100777 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 296 |
| Conread position: | 1-352 |
| Cow position: | chr12:28766090-28765727 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 95 |
| Conread position: | 1-566 |
| Cow position: | chr12:15951334-15950767 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 157 |
| Conread position: | 2-234 |
| Cow position: | chr12:26141754-26141983 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-238 |
| Cow position: | chr12:21207635-21207867 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 2-317 |
| Cow position: | chr12:43031443-43031128 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 2-327 |
| Cow position: | chr12:21254715-21254389 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 3-226 |
| Cow position: | chr12:8982484-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 3-322 |
| Cow position: | chr12:252124-251794 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 3-344 |
| Cow position: | chr12:2282479-2282830 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 5-330 |
| Cow position: | chr12:20998183-20997861 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 6-409 |
| Cow position: | chr12:34854856-34854457 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 7-279 |
| Cow position: | chr12:17975487-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 114, 47 |
| Conread position: | 17-324 |
| Cow position: | chr12:1402443-1402756 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 17-332 |
| Cow position: | chr12:27932993-27932672 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 316 |
| Conread position: | 20-321 |
| Cow position: | chr12:21227499-21227189 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 66, 248 |
| Conread position: | 20-381 |
| Cow position: | chr12:18501000-18501347 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 19 |
| Conread position: | 21-271 |
| Cow position: | chr12:1137541-1137779 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 21-344 |
| Cow position: | chr12:2838897-2838575 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 12 |
| Conread position: | 21-405 |
| Cow position: | chr12:21500074-21500444 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 132, 33 |
| Conread position: | 22-389 |
| Cow position: | chr12:3632297-3631939 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 237, 17 |
| Conread position: | 27-305 |
| Cow position: | chr12:16293894-16294175 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 140, 87 |
| Conread position: | 27-342 |
| Cow position: | chr12:11098204-11098527 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 224 |
| Conread position: | 27-349 |
| Cow position: | chr12:26947030-26946699 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 244 |
| Conread position: | 27-352 |
| Cow position: | chr12:42859865-42859533 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 0 |
| Conread position: | 27-392 |
| Cow position: | chr12:48405233-48405580 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 27-394 |
| Cow position: | chr12:7843116-7843487 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 125 |
| Conread position: | 32-288 |
| Cow position: | chr12:14693600-14693846 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 41-211 |
| Cow position: | chr12:16326684-16326844 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 42-343 |
| Cow position: | chr12:21197935-21198245 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 277 |
| Conread position: | 43-324 |
| Cow position: | chr12:14662655-14662369 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 55-341 |
| Cow position: | chr12:21941755-21942051 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 171 |
| Conread position: | 60-322 |
| Cow position: | chr12:33986157-33986424 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 0 |
| Conread position: | 85-393 |
| Cow position: | chr12:3503287-3503601 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 202, 71 |
| Conread position: | 111-233 |
| Cow position: | chr12:48211759-48211643 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 120-336 |
| Cow position: | chr12:5861209-5861430 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 126-342 |
| Cow position: | chr12:23240065-23240286 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 164, 95 |
Show alignments to all cow chromosomes.