Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-164 |
| Cow position: | chr13:48357010-48357183 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 7, 130 |
| Conread position: | 1-191 |
| Cow position: | chr13:10114942-10114748 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 151 |
| Conread position: | 1-230 |
| Cow position: | chr13:30302775-30303009 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 1-277 |
| Cow position: | chr13:23003806-23003527 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 1-279 |
| Cow position: | chr13:19438652-19438926 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 176, 41 |
| Conread position: | 1-282 |
| Cow position: | chr13:21131034-21131317 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 9, 89 |
| Conread position: | 1-289 |
| Cow position: | chr13:1593444-1593152 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 1-289 |
| Cow position: | chr13:14392365-14392634 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 171, 83 |
| Conread position: | 1-313 |
| Cow position: | chr13:3567492-3567826 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-317 |
| Cow position: | chr13:2297089-2296775 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 194 |
| Conread position: | 1-317 |
| Cow position: | chr13:13324458-13324785 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-317 |
| Cow position: | chr13:32986340-32986021 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 1-320 |
| Cow position: | chr13:31832309-31832636 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 312 |
| Conread position: | 1-323 |
| Cow position: | chr13:15520806-15520473 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-324 |
| Cow position: | chr13:3276867-3277197 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 1-324 |
| Cow position: | chr13:33825020-33824692 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 198 |
| Conread position: | 1-327 |
| Cow position: | chr13:35756950-35757287 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-332 |
| Cow position: | chr13:9044220-9044552 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 32 |
| Conread position: | 1-333 |
| Cow position: | chr13:56730574-56730236 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 1-340 |
| Cow position: | chr13:2908741-2908387 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-342 |
| Cow position: | chr13:15924675-15924320 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-342 |
| Cow position: | chr13:34042655-34042306 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 134 |
| Conread position: | 1-343 |
| Cow position: | chr13:33927853-33927523 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 123 |
| Conread position: | 1-344 |
| Cow position: | chr13:32738111-32737759 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 120 |
| Conread position: | 1-344 |
| Cow position: | chr13:34325966-34325611 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 179 |
| Conread position: | 1-348 |
| Cow position: | chr13:4940796-4941155 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 1-348 |
| Cow position: | chr13:31612626-31612269 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 161 |
| Conread position: | 1-352 |
| Cow position: | chr13:34186978-34186616 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 247 |
| Conread position: | 1-358 |
| Cow position: | chr13:34142948-34142577 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 1-358 |
| Cow position: | chr13:34692872-34693244 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-367 |
| Cow position: | chr13:3654600-3654247 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 132 |
| Conread position: | 1-464 |
| Cow position: | chr13:30657259-30656794 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 208 |
| Conread position: | 1-557 |
| Cow position: | chr13:54284290-54284845 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 1-565 |
| Cow position: | chr13:34936854-34937442 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 362 |
| Conread position: | 2-238 |
| Cow position: | chr13:30245014-30244781 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 2-316 |
| Cow position: | chr13:50109181-50109498 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 2-317 |
| Cow position: | chr13:2389103-2388782 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-317 |
| Cow position: | chr13:17308194-17308511 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 9 |
| Conread position: | 2-317 |
| Cow position: | chr13:49973402-49973720 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 2-322 |
| Cow position: | chr13:4872796-4873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 4-342 |
| Cow position: | chr13:35030261-35030611 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 4-565 |
| Cow position: | chr13:20542656-20542096 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 5-193 |
| Cow position: | chr13:2583589-2583399 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 7-321 |
| Cow position: | chr13:22186017-22185699 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 7-335 |
| Cow position: | chr13:30140710-30141060 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 275 |
| Conread position: | 7-389 |
| Cow position: | chr13:60701569-60701201 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 7-412 |
| Cow position: | chr13:34767561-34767168 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 14 |
| Conread position: | 8-283 |
| Cow position: | chr13:47230265-47229990 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-322 |
| Cow position: | chr13:62327868-62327543 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 8-343 |
| Cow position: | chr13:34911660-34911315 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 216 |
| Conread position: | 12-263 |
| Cow position: | chr13:27748488-27748235 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 17-317 |
| Cow position: | chr13:21840463-21840158 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 0 |
| Conread position: | 17-341 |
| Cow position: | chr13:31734350-31734024 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 160 |
| Conread position: | 18-253 |
| Cow position: | chr13:41312032-41311794 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 18-280 |
| Cow position: | chr13:33336610-33336349 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 224 |
| Conread position: | 20-320 |
| Cow position: | chr13:43852565-43852256 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 177, 68 |
| Conread position: | 21-289 |
| Cow position: | chr13:30063863-30064125 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 26-320 |
| Cow position: | chr13:31560930-31561226 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 11 |
| Conread position: | 27-136 |
| Cow position: | chr13:15451756-15451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 27-252 |
| Cow position: | chr13:38441683-38441460 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 27-322 |
| Cow position: | chr13:16343474-16343177 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 27-324 |
| Cow position: | chr13:6668382-6668077 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 27-346 |
| Cow position: | chr13:28672893-28672574 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 261, 172 |
| Conread position: | 27-392 |
| Cow position: | chr13:58261854-58262220 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 233, 23 |
| Conread position: | 28-393 |
| Cow position: | chr13:2306244-2306603 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 34-286 |
| Cow position: | chr13:28706386-28706134 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 39-279 |
| Cow position: | chr13:19220067-19219832 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 138, 52 |
| Conread position: | 42-198 |
| Cow position: | chr13:47860538-47860704 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 42-336 |
| Cow position: | chr13:46732465-46732174 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 51-334 |
| Cow position: | chr13:4178886-4178599 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 280 |
| Conread position: | 56-289 |
| Cow position: | chr13:11224873-11224640 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 57-289 |
| Cow position: | chr13:4483569-4483797 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 64-289 |
| Cow position: | chr13:3338565-3338791 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 143, 172 |
| Conread position: | 92-229 |
| Cow position: | chr13:57023658-57023794 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 93-287 |
| Cow position: | chr13:21601386-21601581 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 73 |
| Conread position: | 111-266 |
| Cow position: | chr13:30237943-30238098 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 114-317 |
| Cow position: | chr13:60466165-60466373 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 116-317 |
| Cow position: | chr13:3058281-3058074 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 144-324 |
| Cow position: | chr13:9540215-9540031 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 144-337 |
| Cow position: | chr13:32544917-32545110 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 155, 147 |
| Conread position: | 152-324 |
| Cow position: | chr13:34868606-34868785 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 156-405 |
| Cow position: | chr13:34111165-34111407 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 134, 66 |
| Conread position: | 161-327 |
| Cow position: | chr13:676751-676922 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 195-572 |
| Cow position: | chr13:15451647-15451274 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 112 |
Show alignments to all cow chromosomes.