Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-216
Cow position:
Alignm length: 222
Alignm identity: 161
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 32, 161

Conread position: 1-288
Cow position:
Alignm length: 288
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 126

Conread position: 1-309
Cow position:
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 67

Conread position: 1-312
Cow position:
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 111

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 137

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 1-321
Cow position:
Alignm length: 328
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 7, 110

Conread position: 1-323
Cow position:
Alignm length: 334
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 184

Conread position: 1-324
Cow position:
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 1-324
Cow position:
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 74

Conread position: 1-324
Cow position:
Alignm length: 333
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 70

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 72

Conread position: 1-324
Cow position:
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 1-326
Cow position:
Alignm length: 338
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 94

Conread position: 1-327
Cow position:
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 128

Conread position: 1-330
Cow position:
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-330
Cow position:
Alignm length: 339
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-333
Cow position:
Alignm length: 344
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 336

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 96

Conread position: 1-334
Cow position:
Alignm length: 352
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 208

Conread position: 1-334
Cow position:
Alignm length: 351
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 182

Conread position: 1-334
Cow position:
Alignm length: 345
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 1-337
Cow position:
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 294

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-342
Cow position:
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 229

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-343
Cow position:
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 41

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 261

Conread position: 1-343
Cow position:
Alignm length: 352
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 76

Conread position: 1-343
Cow position:
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 19

Conread position: 1-343
Cow position:
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 16

Conread position: 1-343
Cow position:
Alignm length: 358
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-343
Cow position:
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 36

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 96

Conread position: 1-348
Cow position:
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 60

Conread position: 1-352
Cow position:
Alignm length: 363
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 71

Conread position: 1-352
Cow position:
Alignm length: 366
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 163

Conread position: 1-358
Cow position:
Alignm length: 368
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 121

Conread position: 1-358
Cow position:
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 32

Conread position: 1-382
Cow position:
Alignm length: 395
Alignm identity: 265
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 67

Conread position: 1-392
Cow position:
Alignm length: 403
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 106

Conread position: 1-392
Cow position:
Alignm length: 404
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 35

Conread position: 1-393
Cow position:
Alignm length: 420
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 139

Conread position: 1-405
Cow position:
Alignm length: 415
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 119

Conread position: 1-538
Cow position:
Alignm length: 550
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 14

Conread position: 1-565
Cow position:
Alignm length: 583
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 56

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 16

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-330
Cow position:
Alignm length: 340
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 70

Conread position: 3-343
Cow position:
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 3-353
Cow position:
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 30

Conread position: 5-317
Cow position:
Alignm length: 318
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 6

Conread position: 5-337
Cow position:
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 28

Conread position: 7-154
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 60

Conread position: 7-208
Cow position:
Alignm length: 204
Alignm identity: 145
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 7-287
Cow position:
Alignm length: 283
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 54

Conread position: 7-323
Cow position:
Alignm length: 327
Alignm identity: 211
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 98

Conread position: 7-323
Cow position:
Alignm length: 326
Alignm identity: 227
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 26, 240

Conread position: 7-364
Cow position:
Alignm length: 367
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 204

Conread position: 7-388
Cow position:
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 29

Conread position: 7-389
Cow position:
Alignm length: 392
Alignm identity: 258
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 142, 200

Conread position: 8-317
Cow position:
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 17-324
Cow position:
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 42

Conread position: 17-341
Cow position:
Alignm length: 332
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 72

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 215

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 294

Conread position: 18-355
Cow position:
Alignm length: 348
Alignm identity: 223
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 129

Conread position: 19-287
Cow position:
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 42

Conread position: 21-172
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 21-288
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 135, 0

Conread position: 21-352
Cow position:
Alignm length: 341
Alignm identity: 232
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 32, 70

Conread position: 22-405
Cow position:
Alignm length: 392
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 211

Conread position: 27-250
Cow position:
Alignm length: 226
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 40

Conread position: 27-324
Cow position:
Alignm length: 303
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 27-342
Cow position:
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 23

Conread position: 27-343
Cow position:
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 27-389
Cow position:
Alignm length: 375
Alignm identity: 250
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 37, 110

Conread position: 27-390
Cow position:
Alignm length: 374
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 27-405
Cow position:
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 141

Conread position: 27-532
Cow position:
Alignm length: 514
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 69

Conread position: 51-221
Cow position:
Alignm length: 171
Alignm identity: 131
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 55-287
Cow position:
Alignm length: 234
Alignm identity: 172
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 103, 96

Conread position: 55-576
Cow position:
Alignm length: 529
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 36

Conread position: 57-248
Cow position:
Alignm length: 192
Alignm identity: 149
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 62-333
Cow position:
Alignm length: 278
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 27

Conread position: 64-389
Cow position:
Alignm length: 333
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 226, 116

Conread position: 67-289
Cow position:
Alignm length: 223
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 68-402
Cow position:
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 43

Conread position: 80-320
Cow position:
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 202, 33

Conread position: 84-282
Cow position:
Alignm length: 199
Alignm identity: 157
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 88-343
Cow position:
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 70

Conread position: 93-289
Cow position:
Alignm length: 204
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 38

Conread position: 94-334
Cow position:
Alignm length: 247
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 94-401
Cow position:
Alignm length: 316
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 187, 18

Conread position: 113-354
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 169, 118

Conread position: 115-405
Cow position:
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 5

Conread position: 117-317
Cow position:
Alignm length: 208
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 0

Conread position: 141-342
Cow position:
Alignm length: 210
Alignm identity: 155
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 149, 0

Conread position: 145-324
Cow position:
Alignm length: 185
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 146, 12

Conread position: 158-354
Cow position:
Alignm length: 208
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 197-317
Cow position:
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 372-571
Cow position:
Alignm length: 200
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.