Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-135
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 127

Conread position: 1-141
Cow position:
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 94

Conread position: 1-155
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 112

Conread position: 1-191
Cow position:
Alignm length: 198
Alignm identity: 155
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 0

Conread position: 1-279
Cow position:
Alignm length: 295
Alignm identity: 196
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 17

Conread position: 1-280
Cow position:
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 51

Conread position: 1-281
Cow position:
Alignm length: 287
Alignm identity: 208
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 143

Conread position: 1-282
Cow position:
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 260

Conread position: 1-288
Cow position:
Alignm length: 294
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 92

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 71

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 1-291
Cow position:
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 117

Conread position: 1-313
Cow position:
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 41

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 1-317
Cow position:
Alignm length: 329
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 74

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 147

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 185

Conread position: 1-317
Cow position:
Alignm length: 329
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 143

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-317
Cow position:
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 10

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 123

Conread position: 1-324
Cow position:
Alignm length: 333
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 152

Conread position: 1-324
Cow position:
Alignm length: 331
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 38

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 173

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 57

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 236

Conread position: 1-326
Cow position:
Alignm length: 335
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 171

Conread position: 1-326
Cow position:
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 1-331
Cow position:
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 147

Conread position: 1-332
Cow position:
Alignm length: 343
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 52

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 71

Conread position: 1-339
Cow position:
Alignm length: 358
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 346

Conread position: 1-341
Cow position:
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 299

Conread position: 1-341
Cow position:
Alignm length: 352
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 190

Conread position: 1-342
Cow position:
Alignm length: 358
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 73

Conread position: 1-342
Cow position:
Alignm length: 349
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 38

Conread position: 1-342
Cow position:
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 344

Conread position: 1-342
Cow position:
Alignm length: 354
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 139

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 105

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 128

Conread position: 1-343
Cow position:
Alignm length: 358
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 76

Conread position: 1-343
Cow position:
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 111

Conread position: 1-343
Cow position:
Alignm length: 358
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 170

Conread position: 1-343
Cow position:
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 78

Conread position: 1-343
Cow position:
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 172

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 342

Conread position: 1-343
Cow position:
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 68

Conread position: 1-343
Cow position:
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 71

Conread position: 1-344
Cow position:
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 160

Conread position: 1-344
Cow position:
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 17

Conread position: 1-344
Cow position:
Alignm length: 357
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-344
Cow position:
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 36

Conread position: 1-344
Cow position:
Alignm length: 357
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 106

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-352
Cow position:
Alignm length: 361
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 296

Conread position: 1-358
Cow position:
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-374
Cow position:
Alignm length: 383
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 150

Conread position: 1-381
Cow position:
Alignm length: 392
Alignm identity: 262
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 150

Conread position: 1-389
Cow position:
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 225

Conread position: 1-390
Cow position:
Alignm length: 400
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 39

Conread position: 1-405
Cow position:
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 32

Conread position: 1-487
Cow position:
Alignm length: 492
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 50

Conread position: 1-565
Cow position:
Alignm length: 570
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 11

Conread position: 1-565
Cow position:
Alignm length: 571
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 38

Conread position: 2-181
Cow position:
Alignm length: 180
Alignm identity: 139
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 2-187
Cow position:
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 2-210
Cow position:
Alignm length: 209
Alignm identity: 161
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 9, 0

Conread position: 2-278
Cow position:
Alignm length: 278
Alignm identity: 192
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 53, 40

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-327
Cow position:
Alignm length: 332
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-327
Cow position:
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-334
Cow position:
Alignm length: 342
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 100

Conread position: 3-316
Cow position:
Alignm length: 325
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 3-334
Cow position:
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 91

Conread position: 3-334
Cow position:
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 67

Conread position: 3-343
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 28

Conread position: 3-344
Cow position:
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 126

Conread position: 4-317
Cow position:
Alignm length: 325
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 220

Conread position: 5-327
Cow position:
Alignm length: 328
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 6

Conread position: 5-390
Cow position:
Alignm length: 393
Alignm identity: 262
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 204, 14

Conread position: 7-157
Cow position:
Alignm length: 153
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 46

Conread position: 7-163
Cow position:
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 7-324
Cow position:
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 62

Conread position: 7-359
Cow position:
Alignm length: 361
Alignm identity: 255
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 235, 32

Conread position: 7-406
Cow position:
Alignm length: 410
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 67

Conread position: 8-262
Cow position:
Alignm length: 256
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 8-317
Cow position:
Alignm length: 316
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 8-334
Cow position:
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 42

Conread position: 9-289
Cow position:
Alignm length: 284
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 138

Conread position: 12-334
Cow position:
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 12-342
Cow position:
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 225

Conread position: 12-343
Cow position:
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 48

Conread position: 12-348
Cow position:
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 64

Conread position: 12-352
Cow position:
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 9

Conread position: 12-358
Cow position:
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 322

Conread position: 13-252
Cow position:
Alignm length: 243
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 56

Conread position: 13-410
Cow position:
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 111

Conread position: 16-324
Cow position:
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 266

Conread position: 17-136
Cow position:
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 17-289
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 228

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 17-342
Cow position:
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 97

Conread position: 18-324
Cow position:
Alignm length: 313
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 21-351
Cow position:
Alignm length: 336
Alignm identity: 222
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 157, 39

Conread position: 21-360
Cow position:
Alignm length: 349
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 243

Conread position: 21-390
Cow position:
Alignm length: 381
Alignm identity: 253
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 55, 16

Conread position: 21-393
Cow position:
Alignm length: 382
Alignm identity: 266
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 59, 16

Conread position: 21-400
Cow position:
Alignm length: 384
Alignm identity: 260
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 248, 58

Conread position: 21-405
Cow position:
Alignm length: 393
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 34

Conread position: 21-405
Cow position:
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 15

Conread position: 26-405
Cow position:
Alignm length: 386
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 137

Conread position: 27-148
Cow position:
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 27-189
Cow position:
Alignm length: 163
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 27-317
Cow position:
Alignm length: 296
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 0

Conread position: 27-324
Cow position:
Alignm length: 302
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 0

Conread position: 27-328
Cow position:
Alignm length: 307
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 156

Conread position: 27-390
Cow position:
Alignm length: 373
Alignm identity: 257
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 36, 41

Conread position: 29-390
Cow position:
Alignm length: 368
Alignm identity: 253
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 252, 31

Conread position: 29-410
Cow position:
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 92

Conread position: 42-178
Cow position:
Alignm length: 137
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 42-323
Cow position:
Alignm length: 287
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 91

Conread position: 51-266
Cow position:
Alignm length: 224
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 20

Conread position: 51-358
Cow position:
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 37

Conread position: 55-359
Cow position:
Alignm length: 314
Alignm identity: 211
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 23, 9

Conread position: 55-405
Cow position:
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 55-571
Cow position:
Alignm length: 522
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 191

Conread position: 56-358
Cow position:
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 56-410
Cow position:
Alignm length: 361
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 131

Conread position: 59-232
Cow position:
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 82, 0

Conread position: 64-343
Cow position:
Alignm length: 288
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 224, 110

Conread position: 70-389
Cow position:
Alignm length: 330
Alignm identity: 231
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 217, 64

Conread position: 100-341
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 185, 91

Conread position: 100-341
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 185, 91

Conread position: 127-317
Cow position:
Alignm length: 196
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 158, 0

Conread position: 132-359
Cow position:
Alignm length: 233
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 155, 56

Conread position: 139-324
Cow position:
Alignm length: 191
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 151, 64

Conread position: 153-389
Cow position:
Alignm length: 254
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 0

Conread position: 168-342
Cow position:
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 117, 0

Conread position: 168-343
Cow position:
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 31

Conread position: 177-322
Cow position:
Alignm length: 151
Alignm identity: 122
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 108, 63

Conread position: 181-343
Cow position:
Alignm length: 169
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 109, 0

Show alignments to all cow chromosomes.