Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-134
Cow position:
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 65

Conread position: 1-162
Cow position:
Alignm length: 166
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 162

Conread position: 1-189
Cow position:
Alignm length: 195
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 7

Conread position: 1-202
Cow position:
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 1-280
Cow position:
Alignm length: 284
Alignm identity: 197
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 61

Conread position: 1-287
Cow position:
Alignm length: 303
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 256

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 193

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position:
Alignm length: 302
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 32, 98

Conread position: 1-289
Cow position:
Alignm length: 292
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 90

Conread position: 1-289
Cow position:
Alignm length: 304
Alignm identity: 200
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 109

Conread position: 1-305
Cow position:
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 72

Conread position: 1-313
Cow position:
Alignm length: 324
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 47

Conread position: 1-317
Cow position:
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 14

Conread position: 1-317
Cow position:
Alignm length: 322
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 36

Conread position: 1-322
Cow position:
Alignm length: 334
Alignm identity: 228
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 9, 74

Conread position: 1-322
Cow position:
Alignm length: 333
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 69

Conread position: 1-324
Cow position:
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 1-324
Cow position:
Alignm length: 336
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 93

Conread position: 1-334
Cow position:
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 1-334
Cow position:
Alignm length: 344
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-337
Cow position:
Alignm length: 347
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-337
Cow position:
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 40

Conread position: 1-342
Cow position:
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-342
Cow position:
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 268

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-343
Cow position:
Alignm length: 354
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 137

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 263

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 93

Conread position: 1-348
Cow position:
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 36

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 146

Conread position: 1-348
Cow position:
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 95

Conread position: 1-358
Cow position:
Alignm length: 369
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 1-358
Cow position:
Alignm length: 369
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-359
Cow position:
Alignm length: 371
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 203

Conread position: 1-390
Cow position:
Alignm length: 408
Alignm identity: 268
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 9, 93

Conread position: 1-393
Cow position:
Alignm length: 409
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-393
Cow position:
Alignm length: 411
Alignm identity: 272
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 35, 114

Conread position: 1-405
Cow position:
Alignm length: 414
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 128

Conread position: 1-407
Cow position:
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 111

Conread position: 1-407
Cow position:
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 36

Conread position: 1-416
Cow position:
Alignm length: 425
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 102

Conread position: 1-438
Cow position:
Alignm length: 451
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 133

Conread position: 1-526
Cow position:
Alignm length: 539
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 157

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-321
Cow position:
Alignm length: 333
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 9

Conread position: 2-358
Cow position:
Alignm length: 372
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 183

Conread position: 2-565
Cow position:
Alignm length: 591
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 55

Conread position: 3-343
Cow position:
Alignm length: 350
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-352
Cow position:
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 294

Conread position: 3-382
Cow position:
Alignm length: 390
Alignm identity: 243
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 333

Conread position: 3-407
Cow position:
Alignm length: 431
Alignm identity: 287
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 89

Conread position: 4-343
Cow position:
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 7-289
Cow position:
Alignm length: 290
Alignm identity: 191
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 65

Conread position: 7-317
Cow position:
Alignm length: 316
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 9

Conread position: 7-320
Cow position:
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 83

Conread position: 7-324
Cow position:
Alignm length: 321
Alignm identity: 221
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 64, 157

Conread position: 7-334
Cow position:
Alignm length: 340
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 121

Conread position: 7-405
Cow position:
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 50

Conread position: 8-261
Cow position:
Alignm length: 254
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 9-286
Cow position:
Alignm length: 278
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 9-324
Cow position:
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 200

Conread position: 12-334
Cow position:
Alignm length: 334
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 198

Conread position: 17-337
Cow position:
Alignm length: 327
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 17-344
Cow position:
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 17-348
Cow position:
Alignm length: 343
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 20-286
Cow position:
Alignm length: 268
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 41

Conread position: 20-289
Cow position:
Alignm length: 274
Alignm identity: 180
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 154, 91

Conread position: 21-225
Cow position:
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 145, 102

Conread position: 21-263
Cow position:
Alignm length: 244
Alignm identity: 173
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 152, 46

Conread position: 22-343
Cow position:
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 23-405
Cow position:
Alignm length: 390
Alignm identity: 270
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 37, 10

Conread position: 26-223
Cow position:
Alignm length: 199
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 141, 54

Conread position: 26-251
Cow position:
Alignm length: 227
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 134, 23

Conread position: 26-417
Cow position:
Alignm length: 398
Alignm identity: 265
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 36, 73

Conread position: 27-152
Cow position:
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 61

Conread position: 27-289
Cow position:
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 55

Conread position: 27-402
Cow position:
Alignm length: 377
Alignm identity: 244
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 236, 228

Conread position: 28-365
Cow position:
Alignm length: 346
Alignm identity: 240
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 44

Conread position: 31-289
Cow position:
Alignm length: 259
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 135, 0

Conread position: 54-560
Cow position:
Alignm length: 515
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 34

Conread position: 61-322
Cow position:
Alignm length: 268
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 63-334
Cow position:
Alignm length: 278
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 59

Conread position: 65-280
Cow position:
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 103, 0

Conread position: 89-317
Cow position:
Alignm length: 235
Alignm identity: 154
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 127, 0

Conread position: 89-381
Cow position:
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 32

Conread position: 108-289
Cow position:
Alignm length: 182
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 110-296
Cow position:
Alignm length: 188
Alignm identity: 141
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 155, 41

Conread position: 119-344
Cow position:
Alignm length: 229
Alignm identity: 155
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 172, 104

Conread position: 119-407
Cow position:
Alignm length: 296
Alignm identity: 214
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 171, 101

Conread position: 133-572
Cow position:
Alignm length: 448
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 40

Conread position: 150-389
Cow position:
Alignm length: 246
Alignm identity: 171
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 138, 89

Conread position: 187-454
Cow position:
Alignm length: 274
Alignm identity: 189
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 103, 76

Conread position: 195-320
Cow position:
Alignm length: 131
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 95, 9

Conread position: 200-336
Cow position:
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 207-565
Cow position:
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 147

Conread position: 246-405
Cow position:
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 85

Show alignments to all cow chromosomes.