Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-154 |
| Cow position: | chr17:15322630-15322785 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-221 |
| Cow position: | chr17:14308489-14308270 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 1-254 |
| Cow position: | chr17:16859739-16859485 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 200 |
| Conread position: | 1-289 |
| Cow position: | chr17:2588133-2588414 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 62 |
| Conread position: | 1-317 |
| Cow position: | chr17:1879909-1880238 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 1-317 |
| Cow position: | chr17:23324636-23324310 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-321 |
| Cow position: | chr17:15157146-15156816 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 182 |
| Conread position: | 1-322 |
| Cow position: | chr17:2248764-2248435 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 1-324 |
| Cow position: | chr17:3643019-3642685 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-324 |
| Cow position: | chr17:4059920-4060250 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 178 |
| Conread position: | 1-324 |
| Cow position: | chr17:15850217-15850548 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-324 |
| Cow position: | chr17:35592032-35592365 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-326 |
| Cow position: | chr17:228485-228156 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 141 |
| Conread position: | 1-333 |
| Cow position: | chr17:18026940-18026598 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 336 |
| Conread position: | 1-334 |
| Cow position: | chr17:2287203-2287546 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 335 |
| Conread position: | 1-334 |
| Cow position: | chr17:22429665-22429326 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 155 |
| Conread position: | 1-334 |
| Cow position: | chr17:23857219-23856872 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-342 |
| Cow position: | chr17:6259662-6260015 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 245 |
| Conread position: | 1-342 |
| Cow position: | chr17:11087907-11087553 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-343 |
| Cow position: | chr17:18185716-18185363 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 233 |
| Conread position: | 1-343 |
| Cow position: | chr17:22132048-22132400 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 1-348 |
| Cow position: | chr17:13929485-13929846 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-348 |
| Cow position: | chr17:14893978-14894328 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 1-348 |
| Cow position: | chr17:25737480-25737838 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-350 |
| Cow position: | chr17:152659-152297 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 228 |
| Conread position: | 1-350 |
| Cow position: | chr17:20183412-20183055 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 1-352 |
| Cow position: | chr17:2173697-2174055 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 1-352 |
| Cow position: | chr17:16889940-16890303 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 316 |
| Conread position: | 1-352 |
| Cow position: | chr17:20087914-20087572 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 1-358 |
| Cow position: | chr17:27345620-27345985 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 1-381 |
| Cow position: | chr17:12780806-12780418 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 1-398 |
| Cow position: | chr17:40834572-40834960 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 1-403 |
| Cow position: | chr17:4081463-4081866 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 2-203 |
| Cow position: | chr17:22160743-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-238 |
| Cow position: | chr17:24780875-24781108 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 2-283 |
| Cow position: | chr17:2555950-2556227 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-313 |
| Cow position: | chr17:15435618-15435931 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-316 |
| Cow position: | chr17:9653629-9653312 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-317 |
| Cow position: | chr17:8208934-8209250 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 2-317 |
| Cow position: | chr17:43988362-43988677 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 2-321 |
| Cow position: | chr17:15143542-15143219 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 2-322 |
| Cow position: | chr17:1382987-1382665 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-322 |
| Cow position: | chr17:24633781-24634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-323 |
| Cow position: | chr17:14217197-14216872 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 13 |
| Conread position: | 2-327 |
| Cow position: | chr17:6089334-6089006 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-336 |
| Cow position: | chr17:20665899-20665563 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 9 |
| Conread position: | 3-335 |
| Cow position: | chr17:13856950-13856609 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 312 |
| Conread position: | 4-209 |
| Cow position: | chr17:12670626-12670423 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 4-343 |
| Cow position: | chr17:1946798-1947141 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 156 |
| Conread position: | 7-181 |
| Cow position: | chr17:15381814-15381983 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 7-343 |
| Cow position: | chr17:44853111-44852764 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 334 |
| Conread position: | 7-564 |
| Cow position: | chr17:14325673-14325125 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 8-417 |
| Cow position: | chr17:42264329-42264745 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 9-341 |
| Cow position: | chr17:2579457-2579778 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 42 |
| Conread position: | 15-242 |
| Cow position: | chr17:38872910-38873142 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 17-317 |
| Cow position: | chr17:2261948-2262246 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 17-324 |
| Cow position: | chr17:18103841-18103534 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-332 |
| Cow position: | chr17:19269527-19269207 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 18-254 |
| Cow position: | chr17:18849538-18849774 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-275 |
| Cow position: | chr17:18325412-18325152 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 21-324 |
| Cow position: | chr17:7944633-7944331 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 26-358 |
| Cow position: | chr17:31199795-31199478 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 27-287 |
| Cow position: | chr17:4286938-4287187 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 149, 33 |
| Conread position: | 27-401 |
| Cow position: | chr17:20401524-20401888 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 128 |
| Conread position: | 27-405 |
| Cow position: | chr17:4295202-4295574 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 12 |
| Conread position: | 31-263 |
| Cow position: | chr17:39933511-39933742 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 135, 162 |
| Conread position: | 31-391 |
| Cow position: | chr17:6002161-6001802 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 90 |
| Conread position: | 51-343 |
| Cow position: | chr17:40804689-40804987 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 71-286 |
| Cow position: | chr17:249829-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 73-336 |
| Cow position: | chr17:181258-181526 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 77-460 |
| Cow position: | chr17:15370948-15371335 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 80-359 |
| Cow position: | chr17:602522-602252 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 210, 87 |
| Conread position: | 96-370 |
| Cow position: | chr17:2147092-2147370 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 97-274 |
| Cow position: | chr17:26205888-26205711 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-405 |
| Cow position: | chr17:3709284-3708976 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 192, 35 |
| Conread position: | 112-263 |
| Cow position: | chr17:6068568-6068714 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 120-324 |
| Cow position: | chr17:1283763-1283554 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 144-317 |
| Cow position: | chr17:43952596-43952419 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 141, 23 |
| Conread position: | 147-324 |
| Cow position: | chr17:15323215-15323396 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 143, 84 |
| Conread position: | 148-317 |
| Cow position: | chr17:31768069-31767895 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 157-336 |
| Cow position: | chr17:22557601-22557786 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 159-317 |
| Cow position: | chr17:34156109-34156272 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 162-564 |
| Cow position: | chr17:36987687-36987310 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.