Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-154
Cow position:
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 1-221
Cow position:
Alignm length: 224
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 22

Conread position: 1-254
Cow position:
Alignm length: 260
Alignm identity: 192
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 36, 200

Conread position: 1-289
Cow position:
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 1-317
Cow position:
Alignm length: 332
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 94

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-321
Cow position:
Alignm length: 332
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 182

Conread position: 1-322
Cow position:
Alignm length: 332
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 92

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 334
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 178

Conread position: 1-324
Cow position:
Alignm length: 332
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-324
Cow position:
Alignm length: 334
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 1-326
Cow position:
Alignm length: 336
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 141

Conread position: 1-333
Cow position:
Alignm length: 344
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 336

Conread position: 1-334
Cow position:
Alignm length: 345
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 335

Conread position: 1-334
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 155

Conread position: 1-334
Cow position:
Alignm length: 348
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 245

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-343
Cow position:
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 233

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 131

Conread position: 1-348
Cow position:
Alignm length: 362
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 143

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-350
Cow position:
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 228

Conread position: 1-350
Cow position:
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 1-352
Cow position:
Alignm length: 362
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 119

Conread position: 1-352
Cow position:
Alignm length: 365
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 316

Conread position: 1-352
Cow position:
Alignm length: 360
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 99

Conread position: 1-358
Cow position:
Alignm length: 375
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 81

Conread position: 1-381
Cow position:
Alignm length: 395
Alignm identity: 248
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 74

Conread position: 1-398
Cow position:
Alignm length: 404
Alignm identity: 272
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 31, 53

Conread position: 1-403
Cow position:
Alignm length: 418
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 99

Conread position: 2-203
Cow position:
Alignm length: 202
Alignm identity: 156
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 9, 0

Conread position: 2-238
Cow position:
Alignm length: 237
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 2-283
Cow position:
Alignm length: 282
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-313
Cow position:
Alignm length: 317
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-316
Cow position:
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position:
Alignm length: 323
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 13

Conread position: 2-321
Cow position:
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-323
Cow position:
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 13

Conread position: 2-327
Cow position:
Alignm length: 332
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-336
Cow position:
Alignm length: 340
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 9

Conread position: 3-335
Cow position:
Alignm length: 344
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 312

Conread position: 4-209
Cow position:
Alignm length: 206
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 4-343
Cow position:
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 156

Conread position: 7-181
Cow position:
Alignm length: 175
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 7-343
Cow position:
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 334

Conread position: 7-564
Cow position:
Alignm length: 567
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 56

Conread position: 8-417
Cow position:
Alignm length: 423
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 106

Conread position: 9-341
Cow position:
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 42

Conread position: 15-242
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 22, 109

Conread position: 17-317
Cow position:
Alignm length: 303
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 72

Conread position: 17-324
Cow position:
Alignm length: 308
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-332
Cow position:
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 18-254
Cow position:
Alignm length: 237
Alignm identity: 152
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 20-275
Cow position:
Alignm length: 267
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 60

Conread position: 21-324
Cow position:
Alignm length: 308
Alignm identity: 195
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 40

Conread position: 26-358
Cow position:
Alignm length: 340
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 109

Conread position: 27-287
Cow position:
Alignm length: 262
Alignm identity: 184
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 149, 33

Conread position: 27-401
Cow position:
Alignm length: 380
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 128

Conread position: 27-405
Cow position:
Alignm length: 385
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 12

Conread position: 31-263
Cow position:
Alignm length: 237
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 135, 162

Conread position: 31-391
Cow position:
Alignm length: 366
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 90

Conread position: 51-343
Cow position:
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 0

Conread position: 71-286
Cow position:
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 50

Conread position: 73-336
Cow position:
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 77-460
Cow position:
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 97

Conread position: 80-359
Cow position:
Alignm length: 286
Alignm identity: 211
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 210, 87

Conread position: 96-370
Cow position:
Alignm length: 285
Alignm identity: 206
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 41

Conread position: 97-274
Cow position:
Alignm length: 178
Alignm identity: 146
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 98-405
Cow position:
Alignm length: 316
Alignm identity: 206
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 192, 35

Conread position: 112-263
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 120-324
Cow position:
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 144-317
Cow position:
Alignm length: 179
Alignm identity: 147
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 141, 23

Conread position: 147-324
Cow position:
Alignm length: 183
Alignm identity: 137
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 143, 84

Conread position: 148-317
Cow position:
Alignm length: 175
Alignm identity: 143
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 137, 0

Conread position: 157-336
Cow position:
Alignm length: 188
Alignm identity: 141
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 66

Conread position: 159-317
Cow position:
Alignm length: 164
Alignm identity: 136
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 126, 0

Conread position: 162-564
Cow position:
Alignm length: 403
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Show alignments to all cow chromosomes.