Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-195 |
| Cow position: | chr18:16659980-16659793 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 134 |
| Conread position: | 1-221 |
| Cow position: | chr18:43201082-43201305 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-238 |
| Cow position: | chr18:25350689-25350933 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-252 |
| Cow position: | chr18:54024334-54024078 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 1-253 |
| Cow position: | chr18:18897519-18897776 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 222 |
| Conread position: | 1-265 |
| Cow position: | chr18:20832868-20833132 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 1-278 |
| Cow position: | chr18:16393618-16393339 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 1-280 |
| Cow position: | chr18:16864098-16864366 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 1-289 |
| Cow position: | chr18:14130414-14130703 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-289 |
| Cow position: | chr18:28973878-28973584 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-289 |
| Cow position: | chr18:51480863-51481158 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-290 |
| Cow position: | chr18:114418-114709 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 1-317 |
| Cow position: | chr18:19352410-19352734 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 296 |
| Conread position: | 1-317 |
| Cow position: | chr18:51463050-51462727 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 1-322 |
| Cow position: | chr18:51689651-51689981 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-323 |
| Cow position: | chr18:1521154-1521503 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 1-323 |
| Cow position: | chr18:51310605-51310941 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-324 |
| Cow position: | chr18:43146901-43146567 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-324 |
| Cow position: | chr18:47719559-47719225 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 1-324 |
| Cow position: | chr18:54044678-54044364 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 1-324 |
| Cow position: | chr18:55088900-55088566 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-326 |
| Cow position: | chr18:48221902-48222239 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 238 |
| Conread position: | 1-327 |
| Cow position: | chr18:33953543-33953213 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 239 |
| Conread position: | 1-330 |
| Cow position: | chr18:2019661-2019322 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-332 |
| Cow position: | chr18:27838290-27837949 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 1-333 |
| Cow position: | chr18:6869232-6868890 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-334 |
| Cow position: | chr18:33335893-33336232 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 1-334 |
| Cow position: | chr18:33358892-33359235 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 1-334 |
| Cow position: | chr18:35335504-35335849 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-342 |
| Cow position: | chr18:40478412-40478762 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 256 |
| Conread position: | 1-342 |
| Cow position: | chr18:52650956-52651298 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 1-343 |
| Cow position: | chr18:23797672-23798025 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-343 |
| Cow position: | chr18:51258002-51258362 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-344 |
| Cow position: | chr18:16534004-16534359 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 1-348 |
| Cow position: | chr18:36508358-36508715 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 1-348 |
| Cow position: | chr18:41840800-41840442 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-358 |
| Cow position: | chr18:19539555-19539190 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 266 |
| Conread position: | 1-358 |
| Cow position: | chr18:23944350-23943980 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 338 |
| Conread position: | 1-358 |
| Cow position: | chr18:32293793-32294153 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 117 |
| Conread position: | 1-358 |
| Cow position: | chr18:53785862-53786232 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 1-361 |
| Cow position: | chr18:46877972-46877613 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 7 |
| Conread position: | 1-389 |
| Cow position: | chr18:36258334-36257932 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 365 |
| Conread position: | 1-564 |
| Cow position: | chr18:54171820-54171271 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 36 |
| Conread position: | 1-565 |
| Cow position: | chr18:29236837-29237411 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 2-317 |
| Cow position: | chr18:11275071-11274754 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 8 |
| Conread position: | 2-317 |
| Cow position: | chr18:24040698-24040380 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-317 |
| Cow position: | chr18:51341721-51342038 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 2-322 |
| Cow position: | chr18:22602522-22602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-341 |
| Cow position: | chr18:47742053-47742395 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 7-189 |
| Cow position: | chr18:29070282-29070464 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 7-334 |
| Cow position: | chr18:44601569-44601883 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 200, 14 |
| Conread position: | 7-344 |
| Cow position: | chr18:33268860-33269206 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 7-405 |
| Cow position: | chr18:2886990-2886580 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 190 |
| Conread position: | 7-407 |
| Cow position: | chr18:37599498-37599101 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 13-405 |
| Cow position: | chr18:54269622-54270017 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 17-250 |
| Cow position: | chr18:32652267-32652499 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 17-343 |
| Cow position: | chr18:16176571-16176240 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 256 |
| Conread position: | 17-348 |
| Cow position: | chr18:14416023-14416358 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 234 |
| Conread position: | 17-348 |
| Cow position: | chr18:37505110-37505445 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 233 |
| Conread position: | 19-343 |
| Cow position: | chr18:36211070-36210739 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 19-386 |
| Cow position: | chr18:33140426-33140789 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 20-376 |
| Cow position: | chr18:40695743-40695377 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 131, 175 |
| Conread position: | 26-343 |
| Cow position: | chr18:9186711-9186396 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 225, 105 |
| Conread position: | 26-393 |
| Cow position: | chr18:16877533-16877890 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 264, 105 |
| Conread position: | 27-173 |
| Cow position: | chr18:51629422-51629567 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 104 |
| Conread position: | 29-324 |
| Cow position: | chr18:39748637-39748936 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 251 |
| Conread position: | 32-321 |
| Cow position: | chr18:5980501-5980785 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 256, 28 |
| Conread position: | 36-323 |
| Cow position: | chr18:16078783-16079077 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 0 |
| Conread position: | 39-410 |
| Cow position: | chr18:16843267-16842895 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 69 |
| Conread position: | 52-275 |
| Cow position: | chr18:18089391-18089171 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 59-289 |
| Cow position: | chr18:19407287-19407054 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 59-389 |
| Cow position: | chr18:29048474-29048137 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 229, 29 |
| Conread position: | 69-343 |
| Cow position: | chr18:54003616-54003900 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 72-384 |
| Cow position: | chr18:16722638-16722323 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 37, 144 |
| Conread position: | 95-348 |
| Cow position: | chr18:27987185-27987446 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 248 |
| Conread position: | 118-334 |
| Cow position: | chr18:17992273-17992051 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 122-289 |
| Cow position: | chr18:45958870-45959035 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 139-410 |
| Cow position: | chr18:29763539-29763809 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 151, 92 |
| Conread position: | 162-534 |
| Cow position: | chr18:56462711-56462339 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 154 |
| Conread position: | 180-343 |
| Cow position: | chr18:24700905-24700733 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.