Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-195
Cow position:
Alignm length: 201
Alignm identity: 148
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 134

Conread position: 1-221
Cow position:
Alignm length: 224
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-238
Cow position:
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 1-252
Cow position:
Alignm length: 258
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 93

Conread position: 1-253
Cow position:
Alignm length: 259
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 222

Conread position: 1-265
Cow position:
Alignm length: 267
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 168

Conread position: 1-278
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 36, 15

Conread position: 1-280
Cow position:
Alignm length: 285
Alignm identity: 194
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 122

Conread position: 1-289
Cow position:
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-290
Cow position:
Alignm length: 296
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 38

Conread position: 1-317
Cow position:
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 296

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 102

Conread position: 1-322
Cow position:
Alignm length: 331
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-323
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 1-323
Cow position:
Alignm length: 337
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 336
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 68

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 72

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-326
Cow position:
Alignm length: 339
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 238

Conread position: 1-327
Cow position:
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 239

Conread position: 1-330
Cow position:
Alignm length: 340
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-332
Cow position:
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 102

Conread position: 1-333
Cow position:
Alignm length: 343
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 5

Conread position: 1-334
Cow position:
Alignm length: 347
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 134

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-342
Cow position:
Alignm length: 352
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 256

Conread position: 1-342
Cow position:
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 92

Conread position: 1-343
Cow position:
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-343
Cow position:
Alignm length: 361
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-344
Cow position:
Alignm length: 358
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 20

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-358
Cow position:
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 266

Conread position: 1-358
Cow position:
Alignm length: 372
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 338

Conread position: 1-358
Cow position:
Alignm length: 368
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 117

Conread position: 1-358
Cow position:
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 1-361
Cow position:
Alignm length: 367
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 7

Conread position: 1-389
Cow position:
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 365

Conread position: 1-564
Cow position:
Alignm length: 571
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 36

Conread position: 1-565
Cow position:
Alignm length: 578
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 8

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-341
Cow position:
Alignm length: 346
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 7-189
Cow position:
Alignm length: 186
Alignm identity: 130
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 118

Conread position: 7-334
Cow position:
Alignm length: 330
Alignm identity: 226
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 200, 14

Conread position: 7-344
Cow position:
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 65

Conread position: 7-405
Cow position:
Alignm length: 412
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 190

Conread position: 7-407
Cow position:
Alignm length: 409
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 58

Conread position: 13-405
Cow position:
Alignm length: 411
Alignm identity: 275
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 93

Conread position: 17-250
Cow position:
Alignm length: 234
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 17-343
Cow position:
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 256

Conread position: 17-348
Cow position:
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 234

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 233

Conread position: 19-343
Cow position:
Alignm length: 336
Alignm identity: 236
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 18, 29

Conread position: 19-386
Cow position:
Alignm length: 381
Alignm identity: 244
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 125

Conread position: 20-376
Cow position:
Alignm length: 368
Alignm identity: 236
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 131, 175

Conread position: 26-343
Cow position:
Alignm length: 325
Alignm identity: 221
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 225, 105

Conread position: 26-393
Cow position:
Alignm length: 375
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 264, 105

Conread position: 27-173
Cow position:
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 104

Conread position: 29-324
Cow position:
Alignm length: 301
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 251

Conread position: 32-321
Cow position:
Alignm length: 295
Alignm identity: 210
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 256, 28

Conread position: 36-323
Cow position:
Alignm length: 295
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 39-410
Cow position:
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 69

Conread position: 52-275
Cow position:
Alignm length: 224
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 59-289
Cow position:
Alignm length: 235
Alignm identity: 161
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 61, 66

Conread position: 59-389
Cow position:
Alignm length: 342
Alignm identity: 231
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 229, 29

Conread position: 69-343
Cow position:
Alignm length: 292
Alignm identity: 220
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 96, 28

Conread position: 72-384
Cow position:
Alignm length: 321
Alignm identity: 212
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 37, 144

Conread position: 95-348
Cow position:
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 248

Conread position: 118-334
Cow position:
Alignm length: 223
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 0

Conread position: 122-289
Cow position:
Alignm length: 168
Alignm identity: 133
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 139-410
Cow position:
Alignm length: 279
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 151, 92

Conread position: 162-534
Cow position:
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 154

Conread position: 180-343
Cow position:
Alignm length: 173
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 38, 0

Show alignments to all cow chromosomes.