Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-128 |
| Cow position: | chr19:29209590-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-187 |
| Cow position: | chr19:55078775-55078967 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-188 |
| Cow position: | chr19:543597-543404 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-190 |
| Cow position: | chr19:34449-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 1-203 |
| Cow position: | chr19:30372311-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 1-220 |
| Cow position: | chr19:31341735-31341976 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-254 |
| Cow position: | chr19:4385510-4385769 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 127 |
| Conread position: | 1-278 |
| Cow position: | chr19:40887623-40887345 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 1-286 |
| Cow position: | chr19:39688558-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 1-289 |
| Cow position: | chr19:6553640-6553923 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 38 |
| Conread position: | 1-316 |
| Cow position: | chr19:10672277-10671951 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-318 |
| Cow position: | chr19:76224-75911 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 15 |
| Conread position: | 1-327 |
| Cow position: | chr19:37925-38261 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 138 |
| Conread position: | 1-334 |
| Cow position: | chr19:32665559-32665896 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 1-334 |
| Cow position: | chr19:40852401-40852064 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 15 |
| Conread position: | 1-341 |
| Cow position: | chr19:170713-170366 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 1-342 |
| Cow position: | chr19:33873456-33873810 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-343 |
| Cow position: | chr19:39546657-39546995 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 1-348 |
| Cow position: | chr19:28581627-28581274 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 1-348 |
| Cow position: | chr19:33941641-33941997 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 1-348 |
| Cow position: | chr19:39390546-39390895 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 20 |
| Conread position: | 1-349 |
| Cow position: | chr19:172240-172600 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-362 |
| Cow position: | chr19:35376822-35377183 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 1-372 |
| Cow position: | chr19:893584-893205 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 1-405 |
| Cow position: | chr19:15953883-15954278 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 1-456 |
| Cow position: | chr19:32223410-32222953 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 1-563 |
| Cow position: | chr19:377867-377314 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 2-283 |
| Cow position: | chr19:32244723-32245001 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-317 |
| Cow position: | chr19:7342107-7342424 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 13 |
| Conread position: | 2-317 |
| Cow position: | chr19:43143755-43144072 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 3-209 |
| Cow position: | chr19:32237651-32237444 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 190 |
| Conread position: | 3-212 |
| Cow position: | chr19:7405437-7405230 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 3-281 |
| Cow position: | chr19:350252-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 3-341 |
| Cow position: | chr19:687096-687444 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 213 |
| Conread position: | 3-387 |
| Cow position: | chr19:10517076-10516677 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 7-165 |
| Cow position: | chr19:20125654-20125802 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 7-343 |
| Cow position: | chr19:7449982-7449646 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 8-289 |
| Cow position: | chr19:2274338-2274055 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 8-318 |
| Cow position: | chr19:20104754-20105070 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 11-251 |
| Cow position: | chr19:261483-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 11-289 |
| Cow position: | chr19:30428031-30428307 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 12-334 |
| Cow position: | chr19:416708-417034 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 30 |
| Conread position: | 16-342 |
| Cow position: | chr19:7488363-7488696 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 17-267 |
| Cow position: | chr19:15042212-15042459 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 169, 67 |
| Conread position: | 17-289 |
| Cow position: | chr19:439592-439334 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 17-317 |
| Cow position: | chr19:52151780-52151474 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 17-334 |
| Cow position: | chr19:1032128-1032449 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 46 |
| Conread position: | 20-323 |
| Cow position: | chr19:772653-772963 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 0 |
| Conread position: | 21-253 |
| Cow position: | chr19:42299444-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 21-317 |
| Cow position: | chr19:32212015-32211717 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 52 |
| Conread position: | 21-340 |
| Cow position: | chr19:32202801-32203118 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 23-539 |
| Cow position: | chr19:352936-352404 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 322 |
| Conread position: | 26-436 |
| Cow position: | chr19:30755236-30755645 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 27-226 |
| Cow position: | chr19:32785550-32785355 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 27-324 |
| Cow position: | chr19:204022-204324 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 0 |
| Conread position: | 27-324 |
| Cow position: | chr19:28593340-28593626 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 27-390 |
| Cow position: | chr19:42248867-42249234 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 132 |
| Conread position: | 27-393 |
| Cow position: | chr19:35979325-35979681 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 31-221 |
| Cow position: | chr19:7068533-7068715 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 45-323 |
| Cow position: | chr19:680537-680256 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 162, 43 |
| Conread position: | 55-287 |
| Cow position: | chr19:17018554-17018774 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 68-404 |
| Cow position: | chr19:42649010-42648673 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 195 |
| Conread position: | 123-333 |
| Cow position: | chr19:28376641-28376857 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 210 |
| Conread position: | 124-342 |
| Cow position: | chr19:40817545-40817320 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 167, 209 |
| Conread position: | 126-267 |
| Cow position: | chr19:4532624-4532483 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-334 |
| Cow position: | chr19:29209762-29209969 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 161, 47 |
| Conread position: | 138-342 |
| Cow position: | chr19:5729000-5729213 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 141-343 |
| Cow position: | chr19:439286-439082 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 144-324 |
| Cow position: | chr19:341399-341584 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 177-334 |
| Cow position: | chr19:4532418-4532264 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 92 |
| Conread position: | 181-504 |
| Cow position: | chr19:163215-162883 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 187-565 |
| Cow position: | chr19:42906-43286 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 206 |
| Conread position: | 191-526 |
| Cow position: | chr19:27052623-27052295 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 213 |
| Conread position: | 205-322 |
| Cow position: | chr19:5208411-5208533 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 264-565 |
| Cow position: | chr19:137058-136755 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 293-559 |
| Cow position: | chr19:47610415-47610145 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 40, 189 |
| Conread position: | 293-565 |
| Cow position: | chr19:44532444-44532721 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 301-575 |
| Cow position: | chr19:263151-263419 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 384-565 |
| Cow position: | chr19:3138018-3138206 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 0 |
Show alignments to all cow chromosomes.