Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-151 |
| Cow position: | chr20:21393549-21393706 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-283 |
| Cow position: | chr20:8835647-8835364 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 1-289 |
| Cow position: | chr20:28160766-28161050 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 139 |
| Conread position: | 1-289 |
| Cow position: | chr20:28463465-28463754 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 145 |
| Conread position: | 1-317 |
| Cow position: | chr20:822753-823080 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-324 |
| Cow position: | chr20:3033047-3033381 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-324 |
| Cow position: | chr20:15292000-15292330 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-330 |
| Cow position: | chr20:8313450-8313114 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 1-334 |
| Cow position: | chr20:5484176-5484519 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 1-334 |
| Cow position: | chr20:15064755-15065096 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 1-337 |
| Cow position: | chr20:28565610-28565268 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 296 |
| Conread position: | 1-342 |
| Cow position: | chr20:13762888-13763245 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-342 |
| Cow position: | chr20:15947407-15947040 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 228 |
| Conread position: | 1-342 |
| Cow position: | chr20:23798868-23799226 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 285 |
| Conread position: | 1-348 |
| Cow position: | chr20:5534924-5535281 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 149 |
| Conread position: | 1-352 |
| Cow position: | chr20:3270690-3271053 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 241 |
| Conread position: | 1-358 |
| Cow position: | chr20:3684499-3684132 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 1-374 |
| Cow position: | chr20:9953999-9953618 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 173 |
| Conread position: | 1-392 |
| Cow position: | chr20:23469673-23469274 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 195 |
| Conread position: | 1-405 |
| Cow position: | chr20:22206534-22206937 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 164, 68 |
| Conread position: | 2-201 |
| Cow position: | chr20:11679114-11678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-317 |
| Cow position: | chr20:19437945-19438253 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-322 |
| Cow position: | chr20:25961099-25961421 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-327 |
| Cow position: | chr20:5560719-5560391 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-348 |
| Cow position: | chr20:15097882-15097533 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 9 |
| Conread position: | 3-335 |
| Cow position: | chr20:8993646-8993319 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 3-348 |
| Cow position: | chr20:29948487-29948843 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 335 |
| Conread position: | 3-565 |
| Cow position: | chr20:18315596-18315065 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 4-317 |
| Cow position: | chr20:24614526-24614849 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 5-334 |
| Cow position: | chr20:7116475-7116139 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 312 |
| Conread position: | 7-318 |
| Cow position: | chr20:28476302-28476604 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 159, 24 |
| Conread position: | 7-393 |
| Cow position: | chr20:20905208-20904823 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 54, 153 |
| Conread position: | 8-342 |
| Cow position: | chr20:25850992-25850651 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 0 |
| Conread position: | 10-342 |
| Cow position: | chr20:30684336-30684661 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 184 |
| Conread position: | 12-271 |
| Cow position: | chr20:10841244-10840985 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 177 |
| Conread position: | 12-324 |
| Cow position: | chr20:35119577-35119889 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 73 |
| Conread position: | 17-324 |
| Cow position: | chr20:8004217-8003906 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 125 |
| Conread position: | 17-337 |
| Cow position: | chr20:21914334-21914657 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 241 |
| Conread position: | 17-348 |
| Cow position: | chr20:12438753-12438417 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 17-348 |
| Cow position: | chr20:27869205-27869541 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 18-405 |
| Cow position: | chr20:13434942-13434560 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 20-281 |
| Cow position: | chr20:5233139-5232888 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 21-280 |
| Cow position: | chr20:13665195-13664944 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 21-321 |
| Cow position: | chr20:37579449-37579742 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 22-343 |
| Cow position: | chr20:13680045-13679716 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 111 |
| Conread position: | 26-406 |
| Cow position: | chr20:31378867-31378485 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 255, 37 |
| Conread position: | 27-358 |
| Cow position: | chr20:3252116-3251779 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 194 |
| Conread position: | 30-289 |
| Cow position: | chr20:42809267-42809013 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 184, 29 |
| Conread position: | 56-279 |
| Cow position: | chr20:20755402-20755179 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 63-389 |
| Cow position: | chr20:10856978-10856649 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 227, 68 |
| Conread position: | 75-264 |
| Cow position: | chr20:19367523-19367334 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 91, 126 |
| Conread position: | 78-326 |
| Cow position: | chr20:35104562-35104308 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 110-343 |
| Cow position: | chr20:21393694-21393934 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 115-343 |
| Cow position: | chr20:10846011-10845781 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 175, 12 |
| Conread position: | 161-345 |
| Cow position: | chr20:22717589-22717397 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 105 |
| Conread position: | 196-322 |
| Cow position: | chr20:19495170-19495301 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.