Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-131
Cow position: chr21:3615397-3615534 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 1-147
Cow position: chr21:2716578-2716425 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 1-154
Cow position: chr21:33251506-33251656 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 77, 10

Conread position: 1-166
Cow position: chr21:34259115-34258954 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 1-186
Cow position: chr21:2769356-2769165 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 1-250
Cow position: chr21:4222582-4222333 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 173

Conread position: 1-268
Cow position: chr21:47939581-47939849 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-269
Cow position: chr21:3426590-3426864 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 247

Conread position: 1-277
Cow position: chr21:20744654-20744382 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 0

Conread position: 1-283
Cow position: chr21:47948214-47948501 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 213

Conread position: 1-289
Cow position: chr21:10850185-10850478 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 226

Conread position: 1-321
Cow position: chr21:6699463-6699147 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 7, 39

Conread position: 1-324
Cow position: chr21:2883643-2883310 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-324
Cow position: chr21:4456932-4457265 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 1-324
Cow position: chr21:30599815-30599487 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 124

Conread position: 1-324
Cow position: chr21:40271572-40271237 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-326
Cow position: chr21:30165373-30165045 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 65, 0

Conread position: 1-327
Cow position: chr21:2510756-2511093 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-334
Cow position: chr21:2788886-2788543 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 245

Conread position: 1-334
Cow position: chr21:4589887-4589541 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-334
Cow position: chr21:34293122-34293465 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 255

Conread position: 1-334
Cow position: chr21:35596473-35596816 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 236

Conread position: 1-342
Cow position: chr21:3778871-3779225 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-342
Cow position: chr21:10566778-10567128 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 223

Conread position: 1-342
Cow position: chr21:48116214-48116560 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 122

Conread position: 1-343
Cow position: chr21:7267438-7267078 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 277

Conread position: 1-343
Cow position: chr21:18820311-18819970 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 20

Conread position: 1-343
Cow position: chr21:36714737-36715087 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 45

Conread position: 1-344
Cow position: chr21:3194497-3194840 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 222, 7

Conread position: 1-344
Cow position: chr21:4076944-4077298 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 95

Conread position: 1-348
Cow position: chr21:146028-146385 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 220

Conread position: 1-348
Cow position: chr21:31559548-31559193 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 92

Conread position: 1-358
Cow position: chr21:13123898-13123531 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 171

Conread position: 1-415
Cow position: chr21:13282003-13282412 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 268
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 18, 53

Conread position: 1-509
Cow position: chr21:23811981-23812499 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-565
Cow position: chr21:359121-359713 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 122

Conread position: 2-237
Cow position: chr21:8678245-8678013 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-273
Cow position: chr21:21947696-21947425 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 76, 156

Conread position: 2-308
Cow position: chr21:37045028-37045333 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 9

Conread position: 2-317
Cow position: chr21:11505702-11506028 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 9

Conread position: 2-317
Cow position: chr21:12055886-12055569 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position: chr21:26638350-26638033 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position: chr21:2476412-2476104 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position: chr21:4090764-4091086 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 9

Conread position: 2-322
Cow position: chr21:46915703-46916025 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-317
Cow position: chr21:6339673-6339998 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 3-340
Cow position: chr21:2416342-2416676 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 3-388
Cow position: chr21:2674522-2674103 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 238

Conread position: 3-565
Cow position: chr21:4183631-4184179 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 135

Conread position: 3-565
Cow position: chr21:9891701-9892292 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 51

Conread position: 4-285
Cow position: chr21:216415-216684 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 237, 96

Conread position: 4-334
Cow position: chr21:3798263-3797921 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 5-322
Cow position: chr21:11453538-11453219 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 6

Conread position: 5-343
Cow position: chr21:1292062-1291733 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 15

Conread position: 7-195
Cow position: chr21:18692833-18693017 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 45

Conread position: 7-277
Cow position: chr21:21926589-21926324 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 221, 53

Conread position: 9-201
Cow position: chr21:37147623-37147820 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 107

Conread position: 12-279
Cow position: chr21:10762522-10762774 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 179
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 12-326
Cow position: chr21:27256158-27255846 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 204
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 148, 42

Conread position: 12-344
Cow position: chr21:4086924-4087261 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 30

Conread position: 17-317
Cow position: chr21:39425190-39425495 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 43

Conread position: 17-324
Cow position: chr21:30561929-30562241 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 19-415
Cow position: chr21:19650933-19651329 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 257
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 41, 14

Conread position: 20-253
Cow position: chr21:32517019-32517257 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 148, 0

Conread position: 20-265
Cow position: chr21:36824826-36825069 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 162
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 32

Conread position: 21-225
Cow position: chr21:33755435-33755636 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 148, 102

Conread position: 21-279
Cow position: chr21:992895-992640 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 21-343
Cow position: chr21:2502026-2502350 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 227, 28

Conread position: 21-402
Cow position: chr21:26823103-26822718 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 198

Conread position: 22-348
Cow position: chr21:1191295-1191626 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 71

Conread position: 26-253
Cow position: chr21:34054605-34054373 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 25

Conread position: 26-401
Cow position: chr21:21914421-21914803 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 103

Conread position: 26-571
Cow position: chr21:2541277-2540731 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 24

Conread position: 27-324
Cow position: chr21:2529990-2529689 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 37

Conread position: 39-371
Cow position: chr21:23860940-23861265 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 135, 46

Conread position: 53-391
Cow position: chr21:445260-445585 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 150, 10

Conread position: 67-322
Cow position: chr21:26650218-26650478 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 77-532
Cow position: chr21:30226206-30226656 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 248

Conread position: 78-275
Cow position: chr21:1690653-1690465 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 73

Conread position: 90-348
Cow position: chr21:35143968-35144219 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 200, 111

Conread position: 93-335
Cow position: chr21:27282599-27282835 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 197, 53

Conread position: 94-359
Cow position: chr21:23601398-23601661 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 187, 129

Conread position: 100-323
Cow position: chr21:3615531-3615749 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 179
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 39

Conread position: 123-262
Cow position: chr21:37292622-37292759 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 152-334
Cow position: chr21:34258728-34258539 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 150
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 70, 0

Conread position: 160-335
Cow position: chr21:33251776-33251955 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 55, 63

Conread position: 166-563
Cow position: chr21:9870022-9870414 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 179

Conread position: 183-334
Cow position: chr21:2716425-2716268 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 226-560
Cow position: chr21:29105-29440 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 62, 195

Show alignments to all cow chromosomes.