Cow genome map
Conread name: | Ss1.1-rpigcf0_018239.5 |
Conread position: | 1-131 |
Cow position: | chr21:3615397-3615534 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 108 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-147 |
Cow position: | chr21:2716578-2716425 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 121 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 1-154 |
Cow position: | chr21:33251506-33251656 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 124 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 77, 10 |
Conread position: | 1-166 |
Cow position: | chr21:34259115-34258954 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 127 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 1-186 |
Cow position: | chr21:2769356-2769165 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 146 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 1-250 |
Cow position: | chr21:4222582-4222333 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 173 |
Conread position: | 1-268 |
Cow position: | chr21:47939581-47939849 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-269 |
Cow position: | chr21:3426590-3426864 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 247 |
Conread position: | 1-277 |
Cow position: | chr21:20744654-20744382 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 0 |
Conread position: | 1-283 |
Cow position: | chr21:47948214-47948501 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 213 |
Conread position: | 1-289 |
Cow position: | chr21:10850185-10850478 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 226 |
Conread position: | 1-321 |
Cow position: | chr21:6699463-6699147 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 223 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 7, 39 |
Conread position: | 1-324 |
Cow position: | chr21:2883643-2883310 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 1-324 |
Cow position: | chr21:4456932-4457265 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 20 |
Conread position: | 1-324 |
Cow position: | chr21:30599815-30599487 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 124 |
Conread position: | 1-324 |
Cow position: | chr21:40271572-40271237 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-326 |
Cow position: | chr21:30165373-30165045 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 224 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 1-327 |
Cow position: | chr21:2510756-2511093 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 1-334 |
Cow position: | chr21:2788886-2788543 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 245 |
Conread position: | 1-334 |
Cow position: | chr21:4589887-4589541 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 1-334 |
Cow position: | chr21:34293122-34293465 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 255 |
Conread position: | 1-334 |
Cow position: | chr21:35596473-35596816 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 236 |
Conread position: | 1-342 |
Cow position: | chr21:3778871-3779225 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-342 |
Cow position: | chr21:10566778-10567128 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 223 |
Conread position: | 1-342 |
Cow position: | chr21:48116214-48116560 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 122 |
Conread position: | 1-343 |
Cow position: | chr21:7267438-7267078 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 277 |
Conread position: | 1-343 |
Cow position: | chr21:18820311-18819970 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 20 |
Conread position: | 1-343 |
Cow position: | chr21:36714737-36715087 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 45 |
Conread position: | 1-344 |
Cow position: | chr21:3194497-3194840 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 239 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 222, 7 |
Conread position: | 1-344 |
Cow position: | chr21:4076944-4077298 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 95 |
Conread position: | 1-348 |
Cow position: | chr21:146028-146385 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 220 |
Conread position: | 1-348 |
Cow position: | chr21:31559548-31559193 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 92 |
Conread position: | 1-358 |
Cow position: | chr21:13123898-13123531 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 171 |
Conread position: | 1-415 |
Cow position: | chr21:13282003-13282412 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 268 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 18, 53 |
Conread position: | 1-509 |
Cow position: | chr21:23811981-23812499 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-565 |
Cow position: | chr21:359121-359713 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 122 |
Conread position: | 2-237 |
Cow position: | chr21:8678245-8678013 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 186 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 2-273 |
Cow position: | chr21:21947696-21947425 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 186 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 76, 156 |
Conread position: | 2-308 |
Cow position: | chr21:37045028-37045333 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 282, 9 |
Conread position: | 2-317 |
Cow position: | chr21:11505702-11506028 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 9 |
Conread position: | 2-317 |
Cow position: | chr21:12055886-12055569 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-317 |
Cow position: | chr21:26638350-26638033 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-322 |
Cow position: | chr21:2476412-2476104 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-322 |
Cow position: | chr21:4090764-4091086 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 288, 9 |
Conread position: | 2-322 |
Cow position: | chr21:46915703-46916025 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 3-317 |
Cow position: | chr21:6339673-6339998 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 3-340 |
Cow position: | chr21:2416342-2416676 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 17 |
Conread position: | 3-388 |
Cow position: | chr21:2674522-2674103 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 238 |
Conread position: | 3-565 |
Cow position: | chr21:4183631-4184179 (view UCSC Genome Browser custom track) |
Alignm length: | 574 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 135 |
Conread position: | 3-565 |
Cow position: | chr21:9891701-9892292 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 51 |
Conread position: | 4-285 |
Cow position: | chr21:216415-216684 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 202 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 237, 96 |
Conread position: | 4-334 |
Cow position: | chr21:3798263-3797921 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 5-322 |
Cow position: | chr21:11453538-11453219 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 280, 6 |
Conread position: | 5-343 |
Cow position: | chr21:1292062-1291733 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 15 |
Conread position: | 7-195 |
Cow position: | chr21:18692833-18693017 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 138 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 25, 45 |
Conread position: | 7-277 |
Cow position: | chr21:21926589-21926324 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 191 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 221, 53 |
Conread position: | 9-201 |
Cow position: | chr21:37147623-37147820 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 143 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 45, 107 |
Conread position: | 12-279 |
Cow position: | chr21:10762522-10762774 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 179 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 12-326 |
Cow position: | chr21:27256158-27255846 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 204 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 148, 42 |
Conread position: | 12-344 |
Cow position: | chr21:4086924-4087261 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 30 |
Conread position: | 17-317 |
Cow position: | chr21:39425190-39425495 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 43 |
Conread position: | 17-324 |
Cow position: | chr21:30561929-30562241 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 0 |
Conread position: | 19-415 |
Cow position: | chr21:19650933-19651329 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 257 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 41, 14 |
Conread position: | 20-253 |
Cow position: | chr21:32517019-32517257 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 161 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 148, 0 |
Conread position: | 20-265 |
Cow position: | chr21:36824826-36825069 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 162 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 18, 32 |
Conread position: | 21-225 |
Cow position: | chr21:33755435-33755636 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 145 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 148, 102 |
Conread position: | 21-279 |
Cow position: | chr21:992895-992640 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 187 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 21-343 |
Cow position: | chr21:2502026-2502350 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 231 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 227, 28 |
Conread position: | 21-402 |
Cow position: | chr21:26823103-26822718 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 198 |
Conread position: | 22-348 |
Cow position: | chr21:1191295-1191626 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 71 |
Conread position: | 26-253 |
Cow position: | chr21:34054605-34054373 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 166 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 112, 25 |
Conread position: | 26-401 |
Cow position: | chr21:21914421-21914803 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 103 |
Conread position: | 26-571 |
Cow position: | chr21:2541277-2540731 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 24 |
Conread position: | 27-324 |
Cow position: | chr21:2529990-2529689 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 37 |
Conread position: | 39-371 |
Cow position: | chr21:23860940-23861265 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 238 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 135, 46 |
Conread position: | 53-391 |
Cow position: | chr21:445260-445585 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 237 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 150, 10 |
Conread position: | 67-322 |
Cow position: | chr21:26650218-26650478 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 0 |
Conread position: | 77-532 |
Cow position: | chr21:30226206-30226656 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 248 |
Conread position: | 78-275 |
Cow position: | chr21:1690653-1690465 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 139 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 13, 73 |
Conread position: | 90-348 |
Cow position: | chr21:35143968-35144219 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 189 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 200, 111 |
Conread position: | 93-335 |
Cow position: | chr21:27282599-27282835 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 184 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 197, 53 |
Conread position: | 94-359 |
Cow position: | chr21:23601398-23601661 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 194 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 187, 129 |
Conread position: | 100-323 |
Cow position: | chr21:3615531-3615749 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 179 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 9, 39 |
Conread position: | 123-262 |
Cow position: | chr21:37292622-37292759 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 104 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 152-334 |
Cow position: | chr21:34258728-34258539 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 150 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 70, 0 |
Conread position: | 160-335 |
Cow position: | chr21:33251776-33251955 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 134 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 55, 63 |
Conread position: | 166-563 |
Cow position: | chr21:9870022-9870414 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 179 |
Conread position: | 183-334 |
Cow position: | chr21:2716425-2716268 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 128 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 226-560 |
Cow position: | chr21:29105-29440 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 235 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 62, 195 |
Show alignments to all cow chromosomes.