Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-161
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 1-164
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 57

Conread position: 1-173
Cow position:
Alignm length: 180
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 1-268
Cow position:
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-277
Cow position:
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 232

Conread position: 1-289
Cow position:
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 194

Conread position: 1-289
Cow position:
Alignm length: 293
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 54

Conread position: 1-310
Cow position:
Alignm length: 318
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 23, 99

Conread position: 1-313
Cow position:
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 55

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 263

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 249

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 139

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 93

Conread position: 1-323
Cow position:
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 72

Conread position: 1-324
Cow position:
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 68

Conread position: 1-324
Cow position:
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 14

Conread position: 1-324
Cow position:
Alignm length: 337
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 205

Conread position: 1-324
Cow position:
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 156

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 93

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-330
Cow position:
Alignm length: 341
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-335
Cow position:
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 58

Conread position: 1-336
Cow position:
Alignm length: 342
Alignm identity: 239
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 280, 40

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 142

Conread position: 1-342
Cow position:
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 167

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 94

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 71

Conread position: 1-344
Cow position:
Alignm length: 353
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 241

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 285

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position:
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 173

Conread position: 1-352
Cow position:
Alignm length: 364
Alignm identity: 246
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 29, 95

Conread position: 1-358
Cow position:
Alignm length: 368
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 166

Conread position: 1-358
Cow position:
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 69

Conread position: 1-358
Cow position:
Alignm length: 368
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 194

Conread position: 1-359
Cow position:
Alignm length: 369
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 7

Conread position: 1-359
Cow position:
Alignm length: 361
Alignm identity: 239
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 9

Conread position: 1-359
Cow position:
Alignm length: 372
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-373
Cow position:
Alignm length: 382
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 98

Conread position: 1-388
Cow position:
Alignm length: 402
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 32

Conread position: 1-388
Cow position:
Alignm length: 399
Alignm identity: 270
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 84

Conread position: 1-393
Cow position:
Alignm length: 394
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 149

Conread position: 1-403
Cow position:
Alignm length: 413
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 40

Conread position: 1-403
Cow position:
Alignm length: 415
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 1-404
Cow position:
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-498
Cow position:
Alignm length: 505
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 31

Conread position: 1-565
Cow position:
Alignm length: 579
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 101

Conread position: 1-565
Cow position:
Alignm length: 577
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 80

Conread position: 2-309
Cow position:
Alignm length: 313
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-316
Cow position:
Alignm length: 327
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-324
Cow position:
Alignm length: 337
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 73

Conread position: 2-565
Cow position:
Alignm length: 588
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 112

Conread position: 3-282
Cow position:
Alignm length: 286
Alignm identity: 207
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 28, 94

Conread position: 3-317
Cow position:
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 18

Conread position: 3-321
Cow position:
Alignm length: 324
Alignm identity: 226
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 279, 57

Conread position: 4-334
Cow position:
Alignm length: 343
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 5-322
Cow position:
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 32

Conread position: 7-142
Cow position:
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 102

Conread position: 7-224
Cow position:
Alignm length: 221
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 26, 153

Conread position: 7-289
Cow position:
Alignm length: 284
Alignm identity: 198
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 110, 40

Conread position: 7-337
Cow position:
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 286

Conread position: 7-372
Cow position:
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 98

Conread position: 7-380
Cow position:
Alignm length: 379
Alignm identity: 246
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 193, 75

Conread position: 7-407
Cow position:
Alignm length: 410
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 59

Conread position: 8-289
Cow position:
Alignm length: 300
Alignm identity: 212
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 64, 121

Conread position: 12-327
Cow position:
Alignm length: 324
Alignm identity: 230
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 31, 123

Conread position: 16-361
Cow position:
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 35

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 17-323
Cow position:
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 20-259
Cow position:
Alignm length: 242
Alignm identity: 176
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 76

Conread position: 20-320
Cow position:
Alignm length: 309
Alignm identity: 221
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 55

Conread position: 20-537
Cow position:
Alignm length: 532
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 21-294
Cow position:
Alignm length: 274
Alignm identity: 196
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 16, 0

Conread position: 21-401
Cow position:
Alignm length: 390
Alignm identity: 255
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 153, 16

Conread position: 21-575
Cow position:
Alignm length: 561
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 67

Conread position: 27-247
Cow position:
Alignm length: 223
Alignm identity: 151
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 33

Conread position: 27-317
Cow position:
Alignm length: 297
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 27-390
Cow position:
Alignm length: 369
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 224

Conread position: 28-185
Cow position:
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 31-202
Cow position:
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 80

Conread position: 31-250
Cow position:
Alignm length: 224
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 166, 61

Conread position: 46-310
Cow position:
Alignm length: 273
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 170, 20

Conread position: 55-248
Cow position:
Alignm length: 195
Alignm identity: 154
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 28, 84

Conread position: 55-283
Cow position:
Alignm length: 229
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 56-359
Cow position:
Alignm length: 312
Alignm identity: 213
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 152, 12

Conread position: 68-317
Cow position:
Alignm length: 255
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 92-539
Cow position:
Alignm length: 450
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 185

Conread position: 94-317
Cow position:
Alignm length: 229
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 63

Conread position: 103-234
Cow position:
Alignm length: 132
Alignm identity: 108
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 112-278
Cow position:
Alignm length: 168
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 71, 77

Conread position: 115-565
Cow position:
Alignm length: 458
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 59

Conread position: 116-350
Cow position:
Alignm length: 239
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 165, 223

Conread position: 119-358
Cow position:
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 123-269
Cow position:
Alignm length: 147
Alignm identity: 114
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 129-289
Cow position:
Alignm length: 162
Alignm identity: 134
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 111, 0

Conread position: 162-317
Cow position:
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 123, 0

Conread position: 167-322
Cow position:
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 118, 0

Conread position: 169-402
Cow position:
Alignm length: 240
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 24

Conread position: 171-334
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 0

Conread position: 213-343
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 11, 64

Conread position: 223-358
Cow position:
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 228-389
Cow position:
Alignm length: 168
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 111

Conread position: 294-564
Cow position:
Alignm length: 275
Alignm identity: 186
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 28, 14

Conread position: 382-564
Cow position:
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Show alignments to all cow chromosomes.