Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-200
Cow position: chr23:2340335-2340532 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 37, 62

Conread position: 1-264
Cow position: chr23:1025129-1024863 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 32, 93

Conread position: 1-271
Cow position: chr23:3013578-3013854 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-282
Cow position: chr23:5874842-5874563 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 192

Conread position: 1-288
Cow position: chr23:34175113-34175402 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 7, 42

Conread position: 1-289
Cow position: chr23:36031441-36031147 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-317
Cow position: chr23:4359762-4360089 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-317
Cow position: chr23:19950651-19950324 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 73

Conread position: 1-317
Cow position: chr23:28217223-28217549 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 56

Conread position: 1-324
Cow position: chr23:15219956-15219625 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-324
Cow position: chr23:22147318-22146988 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-334
Cow position: chr23:988706-988371 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 121

Conread position: 1-334
Cow position: chr23:4276887-4277230 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 93

Conread position: 1-334
Cow position: chr23:4510031-4510354 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 226, 36

Conread position: 1-335
Cow position: chr23:31591878-31591524 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-341
Cow position: chr23:4434393-4434743 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 113

Conread position: 1-341
Cow position: chr23:7273579-7273918 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 61

Conread position: 1-342
Cow position: chr23:4888613-4888959 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 173

Conread position: 1-343
Cow position: chr23:2716322-2716674 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 126

Conread position: 1-343
Cow position: chr23:2795633-2795281 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 276

Conread position: 1-348
Cow position: chr23:2027186-2026830 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 341

Conread position: 1-348
Cow position: chr23:2757526-2757884 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position: chr23:3881766-3881415 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 90

Conread position: 1-348
Cow position: chr23:4640692-4640334 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 94

Conread position: 1-349
Cow position: chr23:11778404-11778780 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 32, 93

Conread position: 1-353
Cow position: chr23:15525542-15525898 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 296

Conread position: 1-358
Cow position: chr23:14974629-14974263 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 166

Conread position: 1-358
Cow position: chr23:27399436-27399804 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 249

Conread position: 1-393
Cow position: chr23:19332470-19332077 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 195

Conread position: 1-405
Cow position: chr23:1327528-1327126 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 104

Conread position: 2-317
Cow position: chr23:2313295-2312981 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position: chr23:31446757-31447079 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-324
Cow position: chr23:967412-967084 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 155

Conread position: 2-343
Cow position: chr23:20302157-20302495 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-286
Cow position: chr23:2524263-2523974 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 3-388
Cow position: chr23:16616915-16616509 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 5-238
Cow position: chr23:4816013-4816250 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 5-348
Cow position: chr23:14965806-14965462 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 64

Conread position: 7-385
Cow position: chr23:36211190-36210794 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 25, 346

Conread position: 7-517
Cow position: chr23:29474618-29474101 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 50

Conread position: 8-343
Cow position: chr23:5779147-5778801 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 61

Conread position: 10-324
Cow position: chr23:25684113-25683798 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 60

Conread position: 12-330
Cow position: chr23:28913360-28913666 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 71

Conread position: 12-358
Cow position: chr23:4751957-4752288 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 243
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 276, 26

Conread position: 17-343
Cow position: chr23:15177029-15177358 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 71

Conread position: 17-345
Cow position: chr23:19489496-19489830 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 71

Conread position: 17-348
Cow position: chr23:30636347-30636011 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 134

Conread position: 18-342
Cow position: chr23:2574491-2574821 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 213

Conread position: 21-321
Cow position: chr23:2763803-2763513 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 228, 75

Conread position: 21-342
Cow position: chr23:31595279-31594956 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 271

Conread position: 21-427
Cow position: chr23:6216533-6216943 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 22-290
Cow position: chr23:19450217-19450478 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 26-256
Cow position: chr23:3380313-3380084 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 220, 56

Conread position: 27-297
Cow position: chr23:10903493-10903770 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 124, 11

Conread position: 28-280
Cow position: chr23:13509033-13509269 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 28-289
Cow position: chr23:20156252-20155989 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 31-280
Cow position: chr23:22945096-22944856 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 42-190
Cow position: chr23:31651574-31651433 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 53-405
Cow position: chr23:38578265-38578623 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 7

Conread position: 55-330
Cow position: chr23:26836270-26836546 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 11, 162

Conread position: 55-340
Cow position: chr23:8980318-8980038 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 43

Conread position: 55-381
Cow position: chr23:39026443-39026772 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 213
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 129, 111

Conread position: 69-283
Cow position: chr23:7352230-7352439 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 124, 55

Conread position: 74-229
Cow position: chr23:2020018-2020170 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 76-286
Cow position: chr23:2782419-2782213 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 9, 37

Conread position: 89-407
Cow position: chr23:16615970-16615649 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 115

Conread position: 112-324
Cow position: chr23:29452270-29452052 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 139, 9

Conread position: 113-318
Cow position: chr23:33699185-33699391 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 177, 23

Conread position: 113-334
Cow position: chr23:2765403-2765176 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Conread position: 113-410
Cow position: chr23:22875623-22875333 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 55

Conread position: 129-344
Cow position: chr23:3863013-3863234 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 162, 27

Conread position: 183-410
Cow position: chr23:31650790-31650562 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 107, 52

Conread position: 198-463
Cow position: chr23:1402745-1402481 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 7

Show alignments to all cow chromosomes.