Cow genome map
Conread name: | Ss1.1-rpigcf0_018239.5 |
Conread position: | 1-200 |
Cow position: | chr23:2340335-2340532 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 156 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 37, 62 |
Conread position: | 1-264 |
Cow position: | chr23:1025129-1024863 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 201 |
Alignm E-value: | 7.9874e-44 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-271 |
Cow position: | chr23:3013578-3013854 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-282 |
Cow position: | chr23:5874842-5874563 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 192 |
Conread position: | 1-288 |
Cow position: | chr23:34175113-34175402 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 204 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 7, 42 |
Conread position: | 1-289 |
Cow position: | chr23:36031441-36031147 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-317 |
Cow position: | chr23:4359762-4360089 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 1-317 |
Cow position: | chr23:19950651-19950324 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 73 |
Conread position: | 1-317 |
Cow position: | chr23:28217223-28217549 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 56 |
Conread position: | 1-324 |
Cow position: | chr23:15219956-15219625 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 1-324 |
Cow position: | chr23:22147318-22146988 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-334 |
Cow position: | chr23:988706-988371 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 121 |
Conread position: | 1-334 |
Cow position: | chr23:4276887-4277230 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 93 |
Conread position: | 1-334 |
Cow position: | chr23:4510031-4510354 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 243 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 226, 36 |
Conread position: | 1-335 |
Cow position: | chr23:31591878-31591524 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 1-341 |
Cow position: | chr23:4434393-4434743 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 113 |
Conread position: | 1-341 |
Cow position: | chr23:7273579-7273918 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 61 |
Conread position: | 1-342 |
Cow position: | chr23:4888613-4888959 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 173 |
Conread position: | 1-343 |
Cow position: | chr23:2716322-2716674 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 126 |
Conread position: | 1-343 |
Cow position: | chr23:2795633-2795281 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 276 |
Conread position: | 1-348 |
Cow position: | chr23:2027186-2026830 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 341 |
Conread position: | 1-348 |
Cow position: | chr23:2757526-2757884 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-348 |
Cow position: | chr23:3881766-3881415 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 90 |
Conread position: | 1-348 |
Cow position: | chr23:4640692-4640334 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 94 |
Conread position: | 1-349 |
Cow position: | chr23:11778404-11778780 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 270 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-353 |
Cow position: | chr23:15525542-15525898 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 296 |
Conread position: | 1-358 |
Cow position: | chr23:14974629-14974263 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 166 |
Conread position: | 1-358 |
Cow position: | chr23:27399436-27399804 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 249 |
Conread position: | 1-393 |
Cow position: | chr23:19332470-19332077 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 195 |
Conread position: | 1-405 |
Cow position: | chr23:1327528-1327126 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 104 |
Conread position: | 2-317 |
Cow position: | chr23:2313295-2312981 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-322 |
Cow position: | chr23:31446757-31447079 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-324 |
Cow position: | chr23:967412-967084 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 155 |
Conread position: | 2-343 |
Cow position: | chr23:20302157-20302495 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 3-286 |
Cow position: | chr23:2524263-2523974 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 3-388 |
Cow position: | chr23:16616915-16616509 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 5-238 |
Cow position: | chr23:4816013-4816250 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 5-348 |
Cow position: | chr23:14965806-14965462 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 64 |
Conread position: | 7-385 |
Cow position: | chr23:36211190-36210794 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 266 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 25, 346 |
Conread position: | 7-517 |
Cow position: | chr23:29474618-29474101 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 50 |
Conread position: | 8-343 |
Cow position: | chr23:5779147-5778801 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 61 |
Conread position: | 10-324 |
Cow position: | chr23:25684113-25683798 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 60 |
Conread position: | 12-330 |
Cow position: | chr23:28913360-28913666 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 278, 71 |
Conread position: | 12-358 |
Cow position: | chr23:4751957-4752288 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 243 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 276, 26 |
Conread position: | 17-343 |
Cow position: | chr23:15177029-15177358 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 71 |
Conread position: | 17-345 |
Cow position: | chr23:19489496-19489830 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 71 |
Conread position: | 17-348 |
Cow position: | chr23:30636347-30636011 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 134 |
Conread position: | 18-342 |
Cow position: | chr23:2574491-2574821 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 272, 213 |
Conread position: | 21-321 |
Cow position: | chr23:2763803-2763513 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 205 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 228, 75 |
Conread position: | 21-342 |
Cow position: | chr23:31595279-31594956 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 271 |
Conread position: | 21-427 |
Cow position: | chr23:6216533-6216943 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 40 |
Conread position: | 22-290 |
Cow position: | chr23:19450217-19450478 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 189 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 26-256 |
Cow position: | chr23:3380313-3380084 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 157 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 220, 56 |
Conread position: | 27-297 |
Cow position: | chr23:10903493-10903770 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 198 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 124, 11 |
Conread position: | 28-280 |
Cow position: | chr23:13509033-13509269 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 177 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 28-289 |
Cow position: | chr23:20156252-20155989 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 194, 0 |
Conread position: | 31-280 |
Cow position: | chr23:22945096-22944856 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 168 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 42-190 |
Cow position: | chr23:31651574-31651433 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 111 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 53-405 |
Cow position: | chr23:38578265-38578623 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 7 |
Conread position: | 55-330 |
Cow position: | chr23:26836270-26836546 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 194 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 11, 162 |
Conread position: | 55-340 |
Cow position: | chr23:8980318-8980038 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 181, 43 |
Conread position: | 55-381 |
Cow position: | chr23:39026443-39026772 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 213 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 129, 111 |
Conread position: | 69-283 |
Cow position: | chr23:7352230-7352439 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 147 |
Alignm E-value: | 7e-22 |
Alignm gaps (pig, cow): | 124, 55 |
Conread position: | 74-229 |
Cow position: | chr23:2020018-2020170 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 114 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 94, 0 |
Conread position: | 76-286 |
Cow position: | chr23:2782419-2782213 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 154 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 9, 37 |
Conread position: | 89-407 |
Cow position: | chr23:16615970-16615649 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 115 |
Conread position: | 112-324 |
Cow position: | chr23:29452270-29452052 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 170 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 139, 9 |
Conread position: | 113-318 |
Cow position: | chr23:33699185-33699391 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 142 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 177, 23 |
Conread position: | 113-334 |
Cow position: | chr23:2765403-2765176 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 177, 0 |
Conread position: | 113-410 |
Cow position: | chr23:22875623-22875333 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 177, 55 |
Conread position: | 129-344 |
Cow position: | chr23:3863013-3863234 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 156 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 162, 27 |
Conread position: | 183-410 |
Cow position: | chr23:31650790-31650562 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 165 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 107, 52 |
Conread position: | 198-463 |
Cow position: | chr23:1402745-1402481 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 198 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 24, 7 |
Show alignments to all cow chromosomes.