Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-147 |
| Cow position: | chr24:17187559-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 32, 137 |
| Conread position: | 1-194 |
| Cow position: | chr24:12224451-12224245 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-268 |
| Cow position: | chr24:13524138-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-268 |
| Cow position: | chr24:22952154-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-289 |
| Cow position: | chr24:4415507-4415217 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 158 |
| Conread position: | 1-289 |
| Cow position: | chr24:6515027-6514740 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 251 |
| Conread position: | 1-289 |
| Cow position: | chr24:14885232-14884942 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 1-303 |
| Cow position: | chr24:15392291-15392015 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-334 |
| Cow position: | chr24:6145378-6145730 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 187 |
| Conread position: | 1-334 |
| Cow position: | chr24:37217022-37217360 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 1-340 |
| Cow position: | chr24:12237072-12237419 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 310 |
| Conread position: | 1-341 |
| Cow position: | chr24:12114023-12113677 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 1-342 |
| Cow position: | chr24:148599-148246 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 1-343 |
| Cow position: | chr24:19833399-19833756 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-352 |
| Cow position: | chr24:6660590-6660218 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 1-352 |
| Cow position: | chr24:14585111-14585453 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 38 |
| Conread position: | 1-353 |
| Cow position: | chr24:6335713-6336060 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 1-385 |
| Cow position: | chr24:31007919-31007533 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 168, 36 |
| Conread position: | 1-399 |
| Cow position: | chr24:35841601-35841195 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 209 |
| Conread position: | 1-405 |
| Cow position: | chr24:12568262-12568662 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 1-539 |
| Cow position: | chr24:12797747-12797205 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 418 |
| Conread position: | 1-539 |
| Cow position: | chr24:36560065-36559533 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 2-141 |
| Cow position: | chr24:7061128-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 2-266 |
| Cow position: | chr24:13623958-13624216 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 2-317 |
| Cow position: | chr24:6025067-6024753 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-317 |
| Cow position: | chr24:6084045-6084362 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-317 |
| Cow position: | chr24:9188703-9188387 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 9 |
| Conread position: | 2-317 |
| Cow position: | chr24:13188204-13188518 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 211 |
| Conread position: | 2-317 |
| Cow position: | chr24:16084632-16084314 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 13 |
| Conread position: | 2-317 |
| Cow position: | chr24:22793201-22793517 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-322 |
| Cow position: | chr24:8030179-8030501 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-322 |
| Cow position: | chr24:12485289-12484967 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-322 |
| Cow position: | chr24:17696950-17696628 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 211 |
| Conread position: | 2-322 |
| Cow position: | chr24:40548906-40549224 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-334 |
| Cow position: | chr24:14384585-14384252 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 3-197 |
| Cow position: | chr24:14390709-14390511 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 3-334 |
| Cow position: | chr24:12161899-12162218 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 3-388 |
| Cow position: | chr24:17303588-17303201 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 7-322 |
| Cow position: | chr24:6434273-6434590 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 9 |
| Conread position: | 7-353 |
| Cow position: | chr24:14873323-14872971 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 321 |
| Conread position: | 8-286 |
| Cow position: | chr24:6352203-6352493 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 50, 266 |
| Conread position: | 8-324 |
| Cow position: | chr24:12086230-12086550 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 43 |
| Conread position: | 8-327 |
| Cow position: | chr24:33739304-33738985 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 29 |
| Conread position: | 9-279 |
| Cow position: | chr24:4464233-4463966 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 12-405 |
| Cow position: | chr24:6537575-6537964 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 17-289 |
| Cow position: | chr24:44017586-44017858 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-192 |
| Cow position: | chr24:38635796-38635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 18-335 |
| Cow position: | chr24:12335733-12335413 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 18-380 |
| Cow position: | chr24:37321560-37321207 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 281, 124 |
| Conread position: | 18-412 |
| Cow position: | chr24:36707887-36708280 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 20-378 |
| Cow position: | chr24:40654429-40654788 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 21-287 |
| Cow position: | chr24:32331369-32331625 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 157, 71 |
| Conread position: | 21-405 |
| Cow position: | chr24:7091551-7091166 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 22-352 |
| Cow position: | chr24:9092229-9091903 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 27-195 |
| Cow position: | chr24:39678459-39678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-224 |
| Cow position: | chr24:12131436-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-324 |
| Cow position: | chr24:33933416-33933718 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 28-324 |
| Cow position: | chr24:29187334-29187635 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 0 |
| Conread position: | 33-278 |
| Cow position: | chr24:12146078-12145830 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 135, 33 |
| Conread position: | 42-289 |
| Cow position: | chr24:1438118-1437876 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 42-358 |
| Cow position: | chr24:35838550-35838234 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 9 |
| Conread position: | 55-557 |
| Cow position: | chr24:16649240-16648736 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 298 |
| Conread position: | 58-374 |
| Cow position: | chr24:12288315-12287993 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 8, 152 |
| Conread position: | 102-317 |
| Cow position: | chr24:6645827-6646045 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 105-405 |
| Cow position: | chr24:1447684-1447989 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 119 |
| Conread position: | 114-390 |
| Cow position: | chr24:8152868-8152587 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 127-309 |
| Cow position: | chr24:7061539-7061726 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 135-317 |
| Cow position: | chr24:5993071-5992884 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 154 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 160-381 |
| Cow position: | chr24:16376708-16376926 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 171-410 |
| Cow position: | chr24:14333237-14333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 196-317 |
| Cow position: | chr24:43813983-43814109 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.