Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-226 |
| Cow position: | chr25:39560311-39560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 1-229 |
| Cow position: | chr25:536821-536597 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-267 |
| Cow position: | chr25:23850487-23850228 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 157, 77 |
| Conread position: | 1-270 |
| Cow position: | chr25:17877786-17877526 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-274 |
| Cow position: | chr25:18027651-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-289 |
| Cow position: | chr25:20629552-20629834 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 1-289 |
| Cow position: | chr25:22147469-22147763 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-317 |
| Cow position: | chr25:17589574-17589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 1-317 |
| Cow position: | chr25:18195124-18194797 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-317 |
| Cow position: | chr25:19917058-19917385 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-317 |
| Cow position: | chr25:20776923-20776601 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 1-317 |
| Cow position: | chr25:27022592-27022265 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-322 |
| Cow position: | chr25:35362448-35362123 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 1-324 |
| Cow position: | chr25:8674890-8675224 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-324 |
| Cow position: | chr25:18060614-18060294 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 1-334 |
| Cow position: | chr25:13781004-13781349 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 338 |
| Conread position: | 1-334 |
| Cow position: | chr25:34656470-34656127 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 1-339 |
| Cow position: | chr25:33665890-33665552 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 1-342 |
| Cow position: | chr25:12942722-12942371 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-348 |
| Cow position: | chr25:18890040-18889683 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 1-348 |
| Cow position: | chr25:26279240-26279591 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 50 |
| Conread position: | 1-350 |
| Cow position: | chr25:36240521-36240884 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 269 |
| Conread position: | 1-358 |
| Cow position: | chr25:11375373-11375005 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 1-358 |
| Cow position: | chr25:17468721-17468358 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 1-358 |
| Cow position: | chr25:26922203-26922555 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 1-405 |
| Cow position: | chr25:33243815-33244198 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 20 |
| Conread position: | 2-317 |
| Cow position: | chr25:32579950-32580266 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 3-405 |
| Cow position: | chr25:18255388-18254979 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 9-327 |
| Cow position: | chr25:18275845-18275517 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 12-289 |
| Cow position: | chr25:24218126-24217851 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 245, 70 |
| Conread position: | 17-178 |
| Cow position: | chr25:33991062-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 17-289 |
| Cow position: | chr25:25506647-25506917 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 18-290 |
| Cow position: | chr25:18645845-18645571 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 117 |
| Conread position: | 20-234 |
| Cow position: | chr25:17615269-17615058 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 158, 24 |
| Conread position: | 21-279 |
| Cow position: | chr25:18421669-18421928 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 192, 45 |
| Conread position: | 21-364 |
| Cow position: | chr25:12759598-12759251 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 11 |
| Conread position: | 21-405 |
| Cow position: | chr25:11933525-11933140 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 22-405 |
| Cow position: | chr25:23345339-23344961 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 212 |
| Conread position: | 22-406 |
| Cow position: | chr25:18093020-18093400 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 131 |
| Conread position: | 26-268 |
| Cow position: | chr25:3378748-3378511 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 34 |
| Conread position: | 27-180 |
| Cow position: | chr25:23388649-23388495 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 27-343 |
| Cow position: | chr25:14016173-14016494 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 62 |
| Conread position: | 51-324 |
| Cow position: | chr25:18303431-18303708 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 194 |
| Conread position: | 56-289 |
| Cow position: | chr25:34346985-34346749 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 56-343 |
| Cow position: | chr25:9544100-9544390 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 35 |
| Conread position: | 66-289 |
| Cow position: | chr25:34014444-34014220 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 142 |
| Conread position: | 71-320 |
| Cow position: | chr25:20494407-20494653 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 93-425 |
| Cow position: | chr25:19288266-19287936 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 195, 40 |
| Conread position: | 177-322 |
| Cow position: | chr25:6172059-6172209 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 177-324 |
| Cow position: | chr25:17560476-17560327 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 130 |
Show alignments to all cow chromosomes.