Cow genome map
| Conread name: | Ss1.1-rpigcf0_018239.5 |
| Conread position: | 1-193 |
| Cow position: | chr27:28890659-28890855 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-279 |
| Cow position: | chr27:27197437-27197169 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 1-334 |
| Cow position: | chr27:5910795-5911140 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-334 |
| Cow position: | chr27:27051614-27051961 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 1-340 |
| Cow position: | chr27:23335094-23335454 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 221 |
| Conread position: | 1-341 |
| Cow position: | chr27:25804951-25804613 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 124 |
| Conread position: | 1-342 |
| Cow position: | chr27:9993273-9992916 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-342 |
| Cow position: | chr27:26324748-26325100 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 336 |
| Conread position: | 1-343 |
| Cow position: | chr27:15278136-15277786 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 1-343 |
| Cow position: | chr27:16432352-16432703 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 1-343 |
| Cow position: | chr27:16439256-16439613 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-343 |
| Cow position: | chr27:25002598-25002248 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 63 |
| Conread position: | 1-348 |
| Cow position: | chr27:893142-893497 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 92 |
| Conread position: | 1-348 |
| Cow position: | chr27:1209284-1209641 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 161 |
| Conread position: | 2-280 |
| Cow position: | chr27:2364692-2364968 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 13 |
| Conread position: | 2-317 |
| Cow position: | chr27:16034450-16034135 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-327 |
| Cow position: | chr27:15541271-15541599 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 9 |
| Conread position: | 2-348 |
| Cow position: | chr27:27662842-27663185 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 9 |
| Conread position: | 3-317 |
| Cow position: | chr27:27753262-27752937 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 17-324 |
| Cow position: | chr27:14460502-14460190 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 17-329 |
| Cow position: | chr27:15638401-15638094 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 20-287 |
| Cow position: | chr27:25160653-25160905 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 21-401 |
| Cow position: | chr27:26035097-26034718 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 22-286 |
| Cow position: | chr27:26227253-26227510 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 26-399 |
| Cow position: | chr27:22316547-22316924 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 153, 130 |
| Conread position: | 27-324 |
| Cow position: | chr27:18560349-18560648 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 113 |
| Conread position: | 33-565 |
| Cow position: | chr27:26556033-26555485 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 6 |
| Conread position: | 59-537 |
| Cow position: | chr27:8561540-8562019 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 148-359 |
| Cow position: | chr27:28078533-28078749 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 57 |
Show alignments to all cow chromosomes.