Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-179
Cow position: chr28:26426297-26426117 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 1-185
Cow position: chr28:17195395-17195212 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 149, 0

Conread position: 1-188
Cow position: chr28:7817198-7817373 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 1-284
Cow position: chr28:15920489-15920199 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position: chr28:1504828-1505122 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-289
Cow position: chr28:5114823-5114541 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 86

Conread position: 1-289
Cow position: chr28:10582009-10581716 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 107

Conread position: 1-289
Cow position: chr28:12410245-12409955 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 122

Conread position: 1-289
Cow position: chr28:17667537-17667243 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position: chr28:22065760-22065474 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 53, 40

Conread position: 1-297
Cow position: chr28:2083579-2083873 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 26

Conread position: 1-317
Cow position: chr28:1953107-1953433 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 1-317
Cow position: chr28:8721472-8721146 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 232

Conread position: 1-317
Cow position: chr28:14750525-14750850 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 181

Conread position: 1-324
Cow position: chr28:1387418-1387090 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 161

Conread position: 1-324
Cow position: chr28:2591891-2592225 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-324
Cow position: chr28:18520484-18520149 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 62

Conread position: 1-327
Cow position: chr28:9137074-9136738 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 192

Conread position: 1-333
Cow position: chr28:24667557-24667898 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-334
Cow position: chr28:9954113-9954454 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-337
Cow position: chr28:13459946-13460288 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 296

Conread position: 1-342
Cow position: chr28:1814891-1814536 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-342
Cow position: chr28:7001965-7002321 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-342
Cow position: chr28:12150287-12150634 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 197

Conread position: 1-342
Cow position: chr28:14705695-14705340 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 214

Conread position: 1-343
Cow position: chr28:3192814-3192462 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position: chr28:15378015-15377658 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 208

Conread position: 1-348
Cow position: chr28:32792403-32792046 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 251

Conread position: 1-348
Cow position: chr28:33252290-33252646 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 1-352
Cow position: chr28:782372-782725 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 295

Conread position: 1-442
Cow position: chr28:10619133-10618695 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 116

Conread position: 1-466
Cow position: chr28:34648920-34649401 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 19

Conread position: 1-517
Cow position: chr28:7790311-7789787 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 343

Conread position: 1-539
Cow position: chr28:5812684-5813204 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 106

Conread position: 1-565
Cow position: chr28:21358985-21359553 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 68

Conread position: 2-222
Cow position: chr28:19563092-19562872 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 120

Conread position: 2-281
Cow position: chr28:11026985-11026703 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 31, 152

Conread position: 2-317
Cow position: chr28:7822244-7822561 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position: chr28:24587420-24587738 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 2-322
Cow position: chr28:13440890-13440568 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 10

Conread position: 2-339
Cow position: chr28:2724904-2724567 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-289
Cow position: chr28:7740468-7740751 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 207

Conread position: 3-341
Cow position: chr28:9155301-9154956 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 210

Conread position: 3-358
Cow position: chr28:4380860-4380498 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 70

Conread position: 3-358
Cow position: chr28:7901333-7901708 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 5-181
Cow position: chr28:15950969-15951142 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 6, 0

Conread position: 5-335
Cow position: chr28:17388466-17388803 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 7-289
Cow position: chr28:5565849-5566124 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 148

Conread position: 7-289
Cow position: chr28:12233009-12232731 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 12-324
Cow position: chr28:5378460-5378772 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 25, 50

Conread position: 13-335
Cow position: chr28:567957-568276 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 75, 18

Conread position: 17-324
Cow position: chr28:8378563-8378879 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 17-342
Cow position: chr28:6780335-6780005 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 17-348
Cow position: chr28:1167883-1167547 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 80

Conread position: 17-352
Cow position: chr28:22261152-22260821 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 72

Conread position: 18-348
Cow position: chr28:5751707-5751371 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 0

Conread position: 21-324
Cow position: chr28:29819736-29820044 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 0

Conread position: 27-348
Cow position: chr28:34593987-34594313 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 27-442
Cow position: chr28:21325802-21326209 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 61

Conread position: 33-185
Cow position: chr28:23727140-23726987 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 140, 98

Conread position: 47-321
Cow position: chr28:18101915-18101644 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 258, 216

Conread position: 51-388
Cow position: chr28:2846140-2845805 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 101

Conread position: 54-427
Cow position: chr28:17311979-17312338 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 252
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 23, 130

Conread position: 55-278
Cow position: chr28:5800658-5800878 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 9, 177

Conread position: 55-324
Cow position: chr28:1931948-1931677 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 236

Conread position: 55-539
Cow position: chr28:2989679-2989184 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 12

Conread position: 56-564
Cow position: chr28:5797470-5797978 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 73

Conread position: 58-349
Cow position: chr28:18181110-18180819 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 233, 159

Conread position: 68-358
Cow position: chr28:17324301-17323998 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 177

Conread position: 86-406
Cow position: chr28:10463085-10462757 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 102-317
Cow position: chr28:485479-485259 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 107-286
Cow position: chr28:22828104-22828283 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 151, 12

Conread position: 113-287
Cow position: chr28:2565711-2565523 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 120-392
Cow position: chr28:29437197-29436920 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 177

Conread position: 123-341
Cow position: chr28:22233293-22233071 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 161, 81

Conread position: 123-539
Cow position: chr28:10071089-10071493 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 64

Conread position: 128-380
Cow position: chr28:29092875-29092623 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 137, 103

Conread position: 145-358
Cow position: chr28:13490277-13490497 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 91, 97

Conread position: 147-324
Cow position: chr28:5937609-5937786 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 84

Conread position: 156-322
Cow position: chr28:30805550-30805379 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 129, 0

Conread position: 157-322
Cow position: chr28:6539123-6538953 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 128, 0

Conread position: 179-342
Cow position: chr28:26426091-26425920 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 109, 0

Conread position: 193-341
Cow position: chr28:24652942-24652785 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 213-403
Cow position: chr28:11357519-11357326 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 75, 160

Conread position: 258-565
Cow position: chr28:7817378-7817695 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 33, 99

Conread position: 286-565
Cow position: chr28:5764519-5764782 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 47, 66

Conread position: 366-575
Cow position: chr28:28117845-28118055 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 147, 12

Show alignments to all cow chromosomes.