Cow genome map
Conread name: | Ss1.1-rpigcf0_018239.5 |
Conread position: | 1-179 |
Cow position: | chr28:26426297-26426117 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 142 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 1-185 |
Cow position: | chr28:17195395-17195212 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 131 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 149, 0 |
Conread position: | 1-188 |
Cow position: | chr28:7817198-7817373 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 136 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 1-284 |
Cow position: | chr28:15920489-15920199 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-289 |
Cow position: | chr28:1504828-1505122 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 1-289 |
Cow position: | chr28:5114823-5114541 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 86 |
Conread position: | 1-289 |
Cow position: | chr28:10582009-10581716 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 107 |
Conread position: | 1-289 |
Cow position: | chr28:12410245-12409955 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 122 |
Conread position: | 1-289 |
Cow position: | chr28:17667537-17667243 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-289 |
Cow position: | chr28:22065760-22065474 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 202 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 53, 40 |
Conread position: | 1-297 |
Cow position: | chr28:2083579-2083873 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 26 |
Conread position: | 1-317 |
Cow position: | chr28:1953107-1953433 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 1-317 |
Cow position: | chr28:8721472-8721146 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 232 |
Conread position: | 1-317 |
Cow position: | chr28:14750525-14750850 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 181 |
Conread position: | 1-324 |
Cow position: | chr28:1387418-1387090 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 161 |
Conread position: | 1-324 |
Cow position: | chr28:2591891-2592225 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 1-324 |
Cow position: | chr28:18520484-18520149 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 62 |
Conread position: | 1-327 |
Cow position: | chr28:9137074-9136738 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 192 |
Conread position: | 1-333 |
Cow position: | chr28:24667557-24667898 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 1-334 |
Cow position: | chr28:9954113-9954454 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 72 |
Conread position: | 1-337 |
Cow position: | chr28:13459946-13460288 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 296 |
Conread position: | 1-342 |
Cow position: | chr28:1814891-1814536 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-342 |
Cow position: | chr28:7001965-7002321 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 1-342 |
Cow position: | chr28:12150287-12150634 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 197 |
Conread position: | 1-342 |
Cow position: | chr28:14705695-14705340 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 214 |
Conread position: | 1-343 |
Cow position: | chr28:3192814-3192462 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-348 |
Cow position: | chr28:15378015-15377658 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 208 |
Conread position: | 1-348 |
Cow position: | chr28:32792403-32792046 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 251 |
Conread position: | 1-348 |
Cow position: | chr28:33252290-33252646 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 94 |
Conread position: | 1-352 |
Cow position: | chr28:782372-782725 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 295 |
Conread position: | 1-442 |
Cow position: | chr28:10619133-10618695 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 116 |
Conread position: | 1-466 |
Cow position: | chr28:34648920-34649401 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 19 |
Conread position: | 1-517 |
Cow position: | chr28:7790311-7789787 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 343 |
Conread position: | 1-539 |
Cow position: | chr28:5812684-5813204 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 106 |
Conread position: | 1-565 |
Cow position: | chr28:21358985-21359553 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 68 |
Conread position: | 2-222 |
Cow position: | chr28:19563092-19562872 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 156 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 18, 120 |
Conread position: | 2-281 |
Cow position: | chr28:11026985-11026703 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 195 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 31, 152 |
Conread position: | 2-317 |
Cow position: | chr28:7822244-7822561 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-317 |
Cow position: | chr28:24587420-24587738 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 9 |
Conread position: | 2-322 |
Cow position: | chr28:13440890-13440568 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 10 |
Conread position: | 2-339 |
Cow position: | chr28:2724904-2724567 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 3-289 |
Cow position: | chr28:7740468-7740751 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 207 |
Conread position: | 3-341 |
Cow position: | chr28:9155301-9154956 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 210 |
Conread position: | 3-358 |
Cow position: | chr28:4380860-4380498 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 70 |
Conread position: | 3-358 |
Cow position: | chr28:7901333-7901708 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 5-181 |
Cow position: | chr28:15950969-15951142 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 137 |
Alignm E-value: | 8e-35 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 5-335 |
Cow position: | chr28:17388466-17388803 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 7-289 |
Cow position: | chr28:5565849-5566124 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 148 |
Conread position: | 7-289 |
Cow position: | chr28:12233009-12232731 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 12-324 |
Cow position: | chr28:5378460-5378772 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 214 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 25, 50 |
Conread position: | 13-335 |
Cow position: | chr28:567957-568276 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 219 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 75, 18 |
Conread position: | 17-324 |
Cow position: | chr28:8378563-8378879 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 0 |
Conread position: | 17-342 |
Cow position: | chr28:6780335-6780005 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 268, 0 |
Conread position: | 17-348 |
Cow position: | chr28:1167883-1167547 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 80 |
Conread position: | 17-352 |
Cow position: | chr28:22261152-22260821 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 72 |
Conread position: | 18-348 |
Cow position: | chr28:5751707-5751371 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 0 |
Conread position: | 21-324 |
Cow position: | chr28:29819736-29820044 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 269, 0 |
Conread position: | 27-348 |
Cow position: | chr28:34593987-34594313 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 263, 0 |
Conread position: | 27-442 |
Cow position: | chr28:21325802-21326209 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 359, 61 |
Conread position: | 33-185 |
Cow position: | chr28:23727140-23726987 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 114 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 140, 98 |
Conread position: | 47-321 |
Cow position: | chr28:18101915-18101644 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 193 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 258, 216 |
Conread position: | 51-388 |
Cow position: | chr28:2846140-2845805 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 237, 101 |
Conread position: | 54-427 |
Cow position: | chr28:17311979-17312338 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 252 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 23, 130 |
Conread position: | 55-278 |
Cow position: | chr28:5800658-5800878 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 166 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 9, 177 |
Conread position: | 55-324 |
Cow position: | chr28:1931948-1931677 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 236 |
Conread position: | 55-539 |
Cow position: | chr28:2989679-2989184 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 12 |
Conread position: | 56-564 |
Cow position: | chr28:5797470-5797978 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 237, 73 |
Conread position: | 58-349 |
Cow position: | chr28:18181110-18180819 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 211 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 233, 159 |
Conread position: | 68-358 |
Cow position: | chr28:17324301-17323998 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 177 |
Conread position: | 86-406 |
Cow position: | chr28:10463085-10462757 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 102-317 |
Cow position: | chr28:485479-485259 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 180 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 0 |
Conread position: | 107-286 |
Cow position: | chr28:22828104-22828283 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 140 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 151, 12 |
Conread position: | 113-287 |
Cow position: | chr28:2565711-2565523 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 136 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 120-392 |
Cow position: | chr28:29437197-29436920 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 188 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 63, 177 |
Conread position: | 123-341 |
Cow position: | chr28:22233293-22233071 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 173 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 161, 81 |
Conread position: | 123-539 |
Cow position: | chr28:10071089-10071493 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 64 |
Conread position: | 128-380 |
Cow position: | chr28:29092875-29092623 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 179 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 137, 103 |
Conread position: | 145-358 |
Cow position: | chr28:13490277-13490497 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 171 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 91, 97 |
Conread position: | 147-324 |
Cow position: | chr28:5937609-5937786 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 129 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 143, 84 |
Conread position: | 156-322 |
Cow position: | chr28:30805550-30805379 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 140 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 157-322 |
Cow position: | chr28:6539123-6538953 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 138 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 128, 0 |
Conread position: | 179-342 |
Cow position: | chr28:26426091-26425920 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 129 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 109, 0 |
Conread position: | 193-341 |
Cow position: | chr28:24652942-24652785 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 125 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 97, 0 |
Conread position: | 213-403 |
Cow position: | chr28:11357519-11357326 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 142 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 75, 160 |
Conread position: | 258-565 |
Cow position: | chr28:7817378-7817695 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 223 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 33, 99 |
Conread position: | 286-565 |
Cow position: | chr28:5764519-5764782 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 197 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 47, 66 |
Conread position: | 366-575 |
Cow position: | chr28:28117845-28118055 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 145 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 147, 12 |
Show alignments to all cow chromosomes.