Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-149
Cow position: chr29:21427112-21426962 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 92

Conread position: 1-154
Cow position: chr29:21246512-21246671 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 1-169
Cow position: chr29:28060722-28060548 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 1-211
Cow position: chr29:16109670-16109885 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 72

Conread position: 1-214
Cow position: chr29:4635026-4634815 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 43

Conread position: 1-217
Cow position: chr29:13853081-13852861 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 173

Conread position: 1-253
Cow position: chr29:32315983-32316241 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-280
Cow position: chr29:44468213-44468483 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 65

Conread position: 1-289
Cow position: chr29:10848166-10847856 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 1-289
Cow position: chr29:39079763-39079476 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 56

Conread position: 1-317
Cow position: chr29:35296817-35297143 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 162

Conread position: 1-322
Cow position: chr29:27250392-27250068 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 157

Conread position: 1-324
Cow position: chr29:2466394-2466058 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-324
Cow position: chr29:16022472-16022806 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position: chr29:21543422-21543093 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 78

Conread position: 1-324
Cow position: chr29:43366057-43365726 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 232

Conread position: 1-334
Cow position: chr29:25932602-25932258 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-334
Cow position: chr29:27040821-27040485 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 143

Conread position: 1-334
Cow position: chr29:35196615-35196951 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 161

Conread position: 1-337
Cow position: chr29:45587403-45587072 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 36

Conread position: 1-342
Cow position: chr29:26164880-26164526 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-342
Cow position: chr29:43322502-43322851 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 193

Conread position: 1-343
Cow position: chr29:9643816-9643461 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 137

Conread position: 1-343
Cow position: chr29:32539753-32540105 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 143

Conread position: 1-344
Cow position: chr29:10824013-10823671 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 36

Conread position: 1-348
Cow position: chr29:2099787-2100145 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-348
Cow position: chr29:6266551-6266201 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 50

Conread position: 1-348
Cow position: chr29:10648309-10647951 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 94

Conread position: 1-348
Cow position: chr29:19623305-19622947 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 99

Conread position: 1-348
Cow position: chr29:20251102-20251459 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-348
Cow position: chr29:23975782-23976140 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-348
Cow position: chr29:45459657-45460016 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 155

Conread position: 1-350
Cow position: chr29:16770071-16770426 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 0

Conread position: 1-381
Cow position: chr29:4332170-4332553 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 253
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 36, 167

Conread position: 1-405
Cow position: chr29:1715188-1715598 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 55

Conread position: 2-141
Cow position: chr29:31181076-31181212 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 2-208
Cow position: chr29:15969198-15968996 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 0

Conread position: 2-287
Cow position: chr29:4056093-4056384 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 95

Conread position: 2-289
Cow position: chr29:38226934-38227216 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 31

Conread position: 2-316
Cow position: chr29:19885022-19885339 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-316
Cow position: chr29:27980965-27980650 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 10

Conread position: 2-317
Cow position: chr29:610660-610343 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position: chr29:18856992-18856675 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-321
Cow position: chr29:10844195-10844513 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 154, 53

Conread position: 2-322
Cow position: chr29:15894898-15894576 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-352
Cow position: chr29:5957546-5957910 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 161

Conread position: 2-388
Cow position: chr29:42650237-42650612 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 32

Conread position: 2-388
Cow position: chr29:42802097-42802472 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 32

Conread position: 3-324
Cow position: chr29:34799865-34799529 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-401
Cow position: chr29:104518-104913 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 18

Conread position: 5-317
Cow position: chr29:670102-669788 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 11

Conread position: 5-324
Cow position: chr29:7431265-7430941 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 228

Conread position: 5-348
Cow position: chr29:48526-48180 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 246

Conread position: 7-232
Cow position: chr29:13648366-13648577 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 157, 56

Conread position: 7-280
Cow position: chr29:8062943-8062667 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 71, 14

Conread position: 7-323
Cow position: chr29:2750456-2750146 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 14

Conread position: 7-358
Cow position: chr29:11049229-11049590 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 153

Conread position: 13-342
Cow position: chr29:40503020-40502687 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 218

Conread position: 17-317
Cow position: chr29:13582036-13582337 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 157

Conread position: 17-324
Cow position: chr29:2689866-2690176 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 178

Conread position: 17-324
Cow position: chr29:2841404-2841097 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 105

Conread position: 17-324
Cow position: chr29:19653069-19653384 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 17-348
Cow position: chr29:14585892-14586222 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 91

Conread position: 19-376
Cow position: chr29:22966290-22965932 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 246, 82

Conread position: 20-313
Cow position: chr29:7840764-7841061 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 165

Conread position: 21-334
Cow position: chr29:12796394-12796095 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 19

Conread position: 22-393
Cow position: chr29:803384-803007 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 5, 188

Conread position: 23-405
Cow position: chr29:15950223-15949836 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 29

Conread position: 26-384
Cow position: chr29:30811505-30811858 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 93

Conread position: 27-289
Cow position: chr29:11841638-11841894 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 134, 10

Conread position: 27-289
Cow position: chr29:14013445-14013700 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 0

Conread position: 27-289
Cow position: chr29:14072966-14072711 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 24, 0

Conread position: 27-289
Cow position: chr29:27654314-27654057 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 28-139
Cow position: chr29:5983206-5983094 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 30-253
Cow position: chr29:17662882-17663104 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 30-348
Cow position: chr29:410548-410225 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 0

Conread position: 35-342
Cow position: chr29:27845322-27845630 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 253, 132

Conread position: 56-325
Cow position: chr29:35246941-35247204 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 47

Conread position: 68-322
Cow position: chr29:13669271-13669021 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 223, 5

Conread position: 72-287
Cow position: chr29:16017130-16016919 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 0

Conread position: 84-322
Cow position: chr29:34925505-34925753 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 129-317
Cow position: chr29:31181492-31181684 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 154
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 155, 28

Conread position: 138-374
Cow position: chr29:24709163-24708923 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 97, 38

Conread position: 145-343
Cow position: chr29:21426932-21426733 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 181, 123

Conread position: 188-565
Cow position: chr29:14086313-14085943 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 42

Conread position: 192-523
Cow position: chr29:5983070-5982736 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 167

Conread position: 196-327
Cow position: chr29:15968718-15968581 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 89, 0

Show alignments to all cow chromosomes.