Cow genome map
Conread name: | Ss1.1-rpigcf0_018239.5 |
Conread position: | 1-149 |
Cow position: | chr29:21427112-21426962 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 119 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 27, 92 |
Conread position: | 1-154 |
Cow position: | chr29:21246512-21246671 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 127 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-169 |
Cow position: | chr29:28060722-28060548 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 135 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-211 |
Cow position: | chr29:16109670-16109885 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 164 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 36, 72 |
Conread position: | 1-214 |
Cow position: | chr29:4635026-4634815 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 151 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 9, 43 |
Conread position: | 1-217 |
Cow position: | chr29:13853081-13852861 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 178 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 173 |
Conread position: | 1-253 |
Cow position: | chr29:32315983-32316241 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-280 |
Cow position: | chr29:44468213-44468483 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 193 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 37, 65 |
Conread position: | 1-289 |
Cow position: | chr29:10848166-10847856 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 1-289 |
Cow position: | chr29:39079763-39079476 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 56 |
Conread position: | 1-317 |
Cow position: | chr29:35296817-35297143 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 162 |
Conread position: | 1-322 |
Cow position: | chr29:27250392-27250068 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 157 |
Conread position: | 1-324 |
Cow position: | chr29:2466394-2466058 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-324 |
Cow position: | chr29:16022472-16022806 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-324 |
Cow position: | chr29:21543422-21543093 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 78 |
Conread position: | 1-324 |
Cow position: | chr29:43366057-43365726 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 232 |
Conread position: | 1-334 |
Cow position: | chr29:25932602-25932258 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-334 |
Cow position: | chr29:27040821-27040485 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 143 |
Conread position: | 1-334 |
Cow position: | chr29:35196615-35196951 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 168, 161 |
Conread position: | 1-337 |
Cow position: | chr29:45587403-45587072 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 36 |
Conread position: | 1-342 |
Cow position: | chr29:26164880-26164526 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-342 |
Cow position: | chr29:43322502-43322851 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 193 |
Conread position: | 1-343 |
Cow position: | chr29:9643816-9643461 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 137 |
Conread position: | 1-343 |
Cow position: | chr29:32539753-32540105 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 143 |
Conread position: | 1-344 |
Cow position: | chr29:10824013-10823671 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 36 |
Conread position: | 1-348 |
Cow position: | chr29:2099787-2100145 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-348 |
Cow position: | chr29:6266551-6266201 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 50 |
Conread position: | 1-348 |
Cow position: | chr29:10648309-10647951 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 94 |
Conread position: | 1-348 |
Cow position: | chr29:19623305-19622947 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 99 |
Conread position: | 1-348 |
Cow position: | chr29:20251102-20251459 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-348 |
Cow position: | chr29:23975782-23976140 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 93 |
Conread position: | 1-348 |
Cow position: | chr29:45459657-45460016 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 155 |
Conread position: | 1-350 |
Cow position: | chr29:16770071-16770426 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 0 |
Conread position: | 1-381 |
Cow position: | chr29:4332170-4332553 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 253 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 36, 167 |
Conread position: | 1-405 |
Cow position: | chr29:1715188-1715598 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 55 |
Conread position: | 2-141 |
Cow position: | chr29:31181076-31181212 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 106 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 2-208 |
Cow position: | chr29:15969198-15968996 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 158 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 2-287 |
Cow position: | chr29:4056093-4056384 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 95 |
Conread position: | 2-289 |
Cow position: | chr29:38226934-38227216 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 31 |
Conread position: | 2-316 |
Cow position: | chr29:19885022-19885339 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 13 |
Conread position: | 2-316 |
Cow position: | chr29:27980965-27980650 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 10 |
Conread position: | 2-317 |
Cow position: | chr29:610660-610343 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-317 |
Cow position: | chr29:18856992-18856675 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-321 |
Cow position: | chr29:10844195-10844513 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 223 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 154, 53 |
Conread position: | 2-322 |
Cow position: | chr29:15894898-15894576 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 9 |
Conread position: | 2-352 |
Cow position: | chr29:5957546-5957910 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 161 |
Conread position: | 2-388 |
Cow position: | chr29:42650237-42650612 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 32 |
Conread position: | 2-388 |
Cow position: | chr29:42802097-42802472 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 32 |
Conread position: | 3-324 |
Cow position: | chr29:34799865-34799529 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 3-401 |
Cow position: | chr29:104518-104913 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 18 |
Conread position: | 5-317 |
Cow position: | chr29:670102-669788 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 280, 11 |
Conread position: | 5-324 |
Cow position: | chr29:7431265-7430941 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 228 |
Conread position: | 5-348 |
Cow position: | chr29:48526-48180 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 246 |
Conread position: | 7-232 |
Cow position: | chr29:13648366-13648577 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 161 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 157, 56 |
Conread position: | 7-280 |
Cow position: | chr29:8062943-8062667 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 193 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 71, 14 |
Conread position: | 7-323 |
Cow position: | chr29:2750456-2750146 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 14 |
Conread position: | 7-358 |
Cow position: | chr29:11049229-11049590 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 153 |
Conread position: | 13-342 |
Cow position: | chr29:40503020-40502687 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 277, 218 |
Conread position: | 17-317 |
Cow position: | chr29:13582036-13582337 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 267, 157 |
Conread position: | 17-324 |
Cow position: | chr29:2689866-2690176 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 178 |
Conread position: | 17-324 |
Cow position: | chr29:2841404-2841097 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 105 |
Conread position: | 17-324 |
Cow position: | chr29:19653069-19653384 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 17-348 |
Cow position: | chr29:14585892-14586222 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 91 |
Conread position: | 19-376 |
Cow position: | chr29:22966290-22965932 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 241 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 246, 82 |
Conread position: | 20-313 |
Cow position: | chr29:7840764-7841061 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 265, 165 |
Conread position: | 21-334 |
Cow position: | chr29:12796394-12796095 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 19 |
Conread position: | 22-393 |
Cow position: | chr29:803384-803007 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 260 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 5, 188 |
Conread position: | 23-405 |
Cow position: | chr29:15950223-15949836 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 29 |
Conread position: | 26-384 |
Cow position: | chr29:30811505-30811858 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 262, 93 |
Conread position: | 27-289 |
Cow position: | chr29:11841638-11841894 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 187 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 134, 10 |
Conread position: | 27-289 |
Cow position: | chr29:14013445-14013700 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 189 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 27-289 |
Cow position: | chr29:14072966-14072711 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 190 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 27-289 |
Cow position: | chr29:27654314-27654057 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 177 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 28-139 |
Cow position: | chr29:5983206-5983094 (view UCSC Genome Browser custom track) |
Alignm length: | 113 |
Alignm identity: | 91 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 30-253 |
Cow position: | chr29:17662882-17663104 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 180 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 30-348 |
Cow position: | chr29:410548-410225 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 0 |
Conread position: | 35-342 |
Cow position: | chr29:27845322-27845630 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 207 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 253, 132 |
Conread position: | 56-325 |
Cow position: | chr29:35246941-35247204 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 180 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 19, 47 |
Conread position: | 68-322 |
Cow position: | chr29:13669271-13669021 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 183 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 223, 5 |
Conread position: | 72-287 |
Cow position: | chr29:16017130-16016919 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 160 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 84-322 |
Cow position: | chr29:34925505-34925753 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 129-317 |
Cow position: | chr29:31181492-31181684 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 154 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 155, 28 |
Conread position: | 138-374 |
Cow position: | chr29:24709163-24708923 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 175 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 97, 38 |
Conread position: | 145-343 |
Cow position: | chr29:21426932-21426733 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 154 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 181, 123 |
Conread position: | 188-565 |
Cow position: | chr29:14086313-14085943 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 42 |
Conread position: | 192-523 |
Cow position: | chr29:5983070-5982736 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 167 |
Conread position: | 196-327 |
Cow position: | chr29:15968718-15968581 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 112 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.