Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-151
Cow position: chr4:31668979-31669129 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 89

Conread position: 1-172
Cow position: chr4:40405920-40405754 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-226
Cow position: chr4:60673536-60673758 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 12, 92

Conread position: 1-232
Cow position: chr4:496284-496056 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 36, 7

Conread position: 1-238
Cow position: chr4:29532049-29531807 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 161

Conread position: 1-274
Cow position: chr4:4905819-4906090 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-287
Cow position: chr4:41119678-41119970 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-289
Cow position: chr4:25599954-25599660 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-300
Cow position: chr4:355575-355878 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 194

Conread position: 1-300
Cow position: chr4:62565652-62565947 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 56, 40

Conread position: 1-317
Cow position: chr4:101264-100941 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 1-317
Cow position: chr4:1930949-1930632 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 10

Conread position: 1-317
Cow position: chr4:3125446-3125787 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 1-317
Cow position: chr4:5879835-5880157 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 69

Conread position: 1-317
Cow position: chr4:16056269-16056593 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 144

Conread position: 1-317
Cow position: chr4:18424855-18424533 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 74

Conread position: 1-317
Cow position: chr4:27333109-27333427 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 161

Conread position: 1-317
Cow position: chr4:30307787-30307467 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 36

Conread position: 1-324
Cow position: chr4:17926590-17926256 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position: chr4:18516561-18516895 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position: chr4:41331106-41331437 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-342
Cow position: chr4:16359548-16359901 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 93

Conread position: 1-342
Cow position: chr4:43880774-43881128 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 173

Conread position: 1-342
Cow position: chr4:48026062-48026415 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 93

Conread position: 1-344
Cow position: chr4:66179323-66178969 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position: chr4:12241554-12241195 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-348
Cow position: chr4:36896039-36896390 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 60

Conread position: 1-349
Cow position: chr4:22471845-22472190 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 66, 50

Conread position: 1-372
Cow position: chr4:969373-968996 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 1-390
Cow position: chr4:17530757-17530367 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 17

Conread position: 1-402
Cow position: chr4:38928689-38929088 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 261
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 7

Conread position: 1-406
Cow position: chr4:23493411-23493799 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 38

Conread position: 1-523
Cow position: chr4:60264899-60264370 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 484

Conread position: 1-539
Cow position: chr4:21338327-21337794 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 28

Conread position: 2-244
Cow position: chr4:528668-528907 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 2-313
Cow position: chr4:47764495-47764183 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-316
Cow position: chr4:32211842-32212159 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position: chr4:158190-158507 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-322
Cow position: chr4:602669-602990 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 10

Conread position: 2-322
Cow position: chr4:65223859-65223537 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-348
Cow position: chr4:44724749-44725106 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 3-348
Cow position: chr4:45049625-45049276 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 252

Conread position: 3-349
Cow position: chr4:33493479-33493849 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 59

Conread position: 7-320
Cow position: chr4:4176108-4176415 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 30, 0

Conread position: 7-320
Cow position: chr4:40824574-40824258 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 270, 51

Conread position: 7-324
Cow position: chr4:47717935-47717608 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 180

Conread position: 7-349
Cow position: chr4:6214881-6214539 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 25, 57

Conread position: 7-358
Cow position: chr4:11618528-11618885 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 7-358
Cow position: chr4:66925672-66926030 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 207

Conread position: 7-359
Cow position: chr4:1497083-1496728 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 319

Conread position: 7-403
Cow position: chr4:30283327-30283719 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 265
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 23, 11

Conread position: 8-334
Cow position: chr4:61256568-61256901 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 185

Conread position: 8-407
Cow position: chr4:8598476-8598076 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 34

Conread position: 8-539
Cow position: chr4:28830706-28831237 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 308

Conread position: 9-243
Cow position: chr4:22027752-22027522 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 157, 7

Conread position: 9-565
Cow position: chr4:46663866-46664419 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 119

Conread position: 11-321
Cow position: chr4:26887179-26886869 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 28

Conread position: 11-324
Cow position: chr4:6490682-6490366 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 79

Conread position: 11-337
Cow position: chr4:33073431-33073100 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 177

Conread position: 12-320
Cow position: chr4:54157694-54157988 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 270, 25

Conread position: 16-289
Cow position: chr4:57979317-57979586 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 17-315
Cow position: chr4:24445514-24445217 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 228

Conread position: 17-317
Cow position: chr4:6268941-6268640 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 241

Conread position: 17-322
Cow position: chr4:13547715-13548026 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 17-348
Cow position: chr4:12586985-12587321 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 71

Conread position: 17-348
Cow position: chr4:43319949-43319624 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 120

Conread position: 18-352
Cow position: chr4:13492264-13492597 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 177

Conread position: 19-358
Cow position: chr4:47134835-47135184 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 27

Conread position: 21-282
Cow position: chr4:39272249-39271985 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 51

Conread position: 26-287
Cow position: chr4:38903900-38904153 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 187, 42

Conread position: 27-289
Cow position: chr4:3961289-3961550 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 27-290
Cow position: chr4:9102039-9102297 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 27-508
Cow position: chr4:34185175-34184725 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 27-520
Cow position: chr4:1464228-1463745 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 210

Conread position: 28-321
Cow position: chr4:38957572-38957282 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 191
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 149, 36

Conread position: 28-322
Cow position: chr4:9355073-9354774 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 0

Conread position: 28-401
Cow position: chr4:11393639-11393269 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 80

Conread position: 45-343
Cow position: chr4:26749172-26748882 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 35, 110

Conread position: 55-164
Cow position: chr4:1371279-1371168 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 55-278
Cow position: chr4:3830205-3830423 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 11, 78

Conread position: 55-343
Cow position: chr4:15193775-15194071 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 183

Conread position: 55-389
Cow position: chr4:33120373-33120704 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 103, 12

Conread position: 68-376
Cow position: chr4:11384696-11385006 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 161

Conread position: 72-215
Cow position: chr4:24198472-24198329 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 76-289
Cow position: chr4:41987603-41987389 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 67

Conread position: 80-243
Cow position: chr4:27443204-27443370 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 88, 0

Conread position: 87-322
Cow position: chr4:9587020-9587260 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 102-405
Cow position: chr4:60630613-60630325 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 197, 43

Conread position: 133-316
Cow position: chr4:4415885-4416074 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 153
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 152, 0

Conread position: 138-324
Cow position: chr4:10408485-10408672 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 47

Conread position: 143-337
Cow position: chr4:51044116-51043921 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 147, 48

Conread position: 160-333
Cow position: chr4:31565475-31565296 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 164-317
Cow position: chr4:41954307-41954466 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 20, 0

Conread position: 164-317
Cow position: chr4:41957962-41958121 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 179-336
Cow position: chr4:18190255-18190416 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 106, 50

Conread position: 183-348
Cow position: chr4:31669122-31669294 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 294-526
Cow position: chr4:54955717-54955946 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 132

Show alignments to all cow chromosomes.