Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-152
Cow position:
Alignm length: 165
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 1-184
Cow position:
Alignm length: 191
Alignm identity: 150
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 32, 0

Conread position: 1-192
Cow position:
Alignm length: 198
Alignm identity: 159
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 30, 96

Conread position: 1-193
Cow position:
Alignm length: 199
Alignm identity: 149
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 1-214
Cow position:
Alignm length: 222
Alignm identity: 170
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 1-222
Cow position:
Alignm length: 226
Alignm identity: 157
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 76

Conread position: 1-253
Cow position:
Alignm length: 259
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 60

Conread position: 1-261
Cow position:
Alignm length: 262
Alignm identity: 182
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 160, 150

Conread position: 1-279
Cow position:
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 200

Conread position: 1-280
Cow position:
Alignm length: 282
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 7, 38

Conread position: 1-287
Cow position:
Alignm length: 291
Alignm identity: 191
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 20

Conread position: 1-289
Cow position:
Alignm length: 294
Alignm identity: 213
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 30, 83

Conread position: 1-289
Cow position:
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 38

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 59

Conread position: 1-289
Cow position:
Alignm length: 303
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 52

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-316
Cow position:
Alignm length: 327
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 170

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 334
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 126

Conread position: 1-324
Cow position:
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-324
Cow position:
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-334
Cow position:
Alignm length: 347
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 54

Conread position: 1-334
Cow position:
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 36

Conread position: 1-334
Cow position:
Alignm length: 341
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 36

Conread position: 1-334
Cow position:
Alignm length: 347
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 161

Conread position: 1-341
Cow position:
Alignm length: 349
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 107

Conread position: 1-343
Cow position:
Alignm length: 350
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 331

Conread position: 1-343
Cow position:
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 9

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-344
Cow position:
Alignm length: 355
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 161

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 256

Conread position: 1-348
Cow position:
Alignm length: 355
Alignm identity: 244
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 17, 90

Conread position: 1-349
Cow position:
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 96

Conread position: 1-350
Cow position:
Alignm length: 354
Alignm identity: 227
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 173, 17

Conread position: 1-352
Cow position:
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 296

Conread position: 1-358
Cow position:
Alignm length: 373
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-358
Cow position:
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-358
Cow position:
Alignm length: 372
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 20

Conread position: 1-399
Cow position:
Alignm length: 408
Alignm identity: 264
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 105, 15

Conread position: 1-403
Cow position:
Alignm length: 416
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 65

Conread position: 1-436
Cow position:
Alignm length: 443
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 1-516
Cow position:
Alignm length: 528
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 2-220
Cow position:
Alignm length: 219
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-234
Cow position:
Alignm length: 233
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-244
Cow position:
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-286
Cow position:
Alignm length: 288
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 2-302
Cow position:
Alignm length: 307
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 92

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 327
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 9

Conread position: 2-317
Cow position:
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 9

Conread position: 2-322
Cow position:
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-327
Cow position:
Alignm length: 333
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 9

Conread position: 2-327
Cow position:
Alignm length: 332
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 9

Conread position: 2-327
Cow position:
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-336
Cow position:
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 9

Conread position: 2-352
Cow position:
Alignm length: 357
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 9

Conread position: 2-386
Cow position:
Alignm length: 397
Alignm identity: 253
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 19, 160

Conread position: 3-340
Cow position:
Alignm length: 351
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 333

Conread position: 3-341
Cow position:
Alignm length: 351
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 3-405
Cow position:
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 58

Conread position: 5-322
Cow position:
Alignm length: 329
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-334
Cow position:
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 5-342
Cow position:
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 6-180
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 7-284
Cow position:
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 133, 90

Conread position: 7-287
Cow position:
Alignm length: 284
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 65, 47

Conread position: 7-317
Cow position:
Alignm length: 323
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 103, 53

Conread position: 7-321
Cow position:
Alignm length: 320
Alignm identity: 208
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 281, 26

Conread position: 7-338
Cow position:
Alignm length: 338
Alignm identity: 229
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 58

Conread position: 8-280
Cow position:
Alignm length: 283
Alignm identity: 188
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 20, 11

Conread position: 8-358
Cow position:
Alignm length: 354
Alignm identity: 237
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 175, 19

Conread position: 8-392
Cow position:
Alignm length: 390
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 273, 52

Conread position: 8-393
Cow position:
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 127

Conread position: 12-273
Cow position:
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 54

Conread position: 12-383
Cow position:
Alignm length: 374
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 120

Conread position: 12-405
Cow position:
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 219

Conread position: 16-336
Cow position:
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 0

Conread position: 16-342
Cow position:
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 235

Conread position: 17-282
Cow position:
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 17-289
Cow position:
Alignm length: 273
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-343
Cow position:
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 302

Conread position: 17-348
Cow position:
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 72

Conread position: 17-349
Cow position:
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 71

Conread position: 21-147
Cow position:
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 21-289
Cow position:
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 12

Conread position: 21-297
Cow position:
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 21-405
Cow position:
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 22-203
Cow position:
Alignm length: 184
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 5, 46

Conread position: 26-389
Cow position:
Alignm length: 372
Alignm identity: 253
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 38, 68

Conread position: 27-289
Cow position:
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 27-289
Cow position:
Alignm length: 264
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 61

Conread position: 27-382
Cow position:
Alignm length: 362
Alignm identity: 237
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 245, 33

Conread position: 27-403
Cow position:
Alignm length: 383
Alignm identity: 251
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 56, 24

Conread position: 27-412
Cow position:
Alignm length: 410
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 32

Conread position: 28-190
Cow position:
Alignm length: 165
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 71, 130

Conread position: 30-289
Cow position:
Alignm length: 261
Alignm identity: 180
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 94, 58

Conread position: 30-340
Cow position:
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 179

Conread position: 33-238
Cow position:
Alignm length: 210
Alignm identity: 156
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 35-265
Cow position:
Alignm length: 233
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 33

Conread position: 40-389
Cow position:
Alignm length: 358
Alignm identity: 221
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 70

Conread position: 51-407
Cow position:
Alignm length: 363
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 53

Conread position: 55-393
Cow position:
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 45

Conread position: 55-393
Cow position:
Alignm length: 339
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 56-390
Cow position:
Alignm length: 345
Alignm identity: 237
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 10, 128

Conread position: 57-317
Cow position:
Alignm length: 266
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 228, 14

Conread position: 72-389
Cow position:
Alignm length: 331
Alignm identity: 220
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 84, 175

Conread position: 73-382
Cow position:
Alignm length: 315
Alignm identity: 206
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 218, 59

Conread position: 83-283
Cow position:
Alignm length: 201
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 87-282
Cow position:
Alignm length: 196
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 93-565
Cow position:
Alignm length: 485
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 168

Conread position: 102-335
Cow position:
Alignm length: 239
Alignm identity: 159
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 173, 65

Conread position: 112-322
Cow position:
Alignm length: 215
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 197

Conread position: 119-289
Cow position:
Alignm length: 171
Alignm identity: 145
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 123-358
Cow position:
Alignm length: 243
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 167, 25

Conread position: 133-317
Cow position:
Alignm length: 190
Alignm identity: 154
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 152, 0

Conread position: 147-322
Cow position:
Alignm length: 181
Alignm identity: 146
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 138, 0

Conread position: 151-336
Cow position:
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 85

Conread position: 152-406
Cow position:
Alignm length: 267
Alignm identity: 185
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 106, 90

Conread position: 168-407
Cow position:
Alignm length: 247
Alignm identity: 169
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 122, 95

Conread position: 169-327
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 182-406
Cow position:
Alignm length: 233
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 106, 0

Conread position: 182-406
Cow position:
Alignm length: 233
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 106, 0

Conread position: 195-322
Cow position:
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 197-350
Cow position:
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 94, 0

Conread position: 197-558
Cow position:
Alignm length: 367
Alignm identity: 255
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 91, 61

Conread position: 202-327
Cow position:
Alignm length: 132
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 218-317
Cow position:
Alignm length: 105
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 219-322
Cow position:
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 266-516
Cow position:
Alignm length: 254
Alignm identity: 172
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 28, 84

Conread position: 441-565
Cow position:
Alignm length: 126
Alignm identity: 99
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 59, 73

Show alignments to all cow chromosomes.