Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-147
Cow position:
Alignm length: 153
Alignm identity: 122
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 1-153
Cow position:
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 1-166
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 126

Conread position: 1-172
Cow position:
Alignm length: 179
Alignm identity: 137
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 32, 65

Conread position: 1-229
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 111, 20

Conread position: 1-250
Cow position:
Alignm length: 257
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 15

Conread position: 1-252
Cow position:
Alignm length: 257
Alignm identity: 157
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 29, 170

Conread position: 1-268
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-274
Cow position:
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-283
Cow position:
Alignm length: 286
Alignm identity: 204
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 165, 41

Conread position: 1-289
Cow position:
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 56

Conread position: 1-289
Cow position:
Alignm length: 289
Alignm identity: 192
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 153

Conread position: 1-305
Cow position:
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 92

Conread position: 1-313
Cow position:
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 1-313
Cow position:
Alignm length: 324
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 1-316
Cow position:
Alignm length: 329
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 15

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-317
Cow position:
Alignm length: 324
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 1-317
Cow position:
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 36

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-317
Cow position:
Alignm length: 332
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-322
Cow position:
Alignm length: 335
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 15

Conread position: 1-324
Cow position:
Alignm length: 330
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 29

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 66

Conread position: 1-334
Cow position:
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-337
Cow position:
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 94

Conread position: 1-338
Cow position:
Alignm length: 348
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 299

Conread position: 1-341
Cow position:
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 77

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 262

Conread position: 1-342
Cow position:
Alignm length: 355
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-342
Cow position:
Alignm length: 352
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 41

Conread position: 1-342
Cow position:
Alignm length: 351
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 38

Conread position: 1-343
Cow position:
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 1-343
Cow position:
Alignm length: 364
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-343
Cow position:
Alignm length: 355
Alignm identity: 245
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 20

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 170

Conread position: 1-344
Cow position:
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 92

Conread position: 1-345
Cow position:
Alignm length: 350
Alignm identity: 238
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 9, 63

Conread position: 1-345
Cow position:
Alignm length: 360
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 114

Conread position: 1-348
Cow position:
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 251

Conread position: 1-348
Cow position:
Alignm length: 365
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 1-351
Cow position:
Alignm length: 360
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 296

Conread position: 1-352
Cow position:
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 98

Conread position: 1-352
Cow position:
Alignm length: 371
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 87

Conread position: 1-358
Cow position:
Alignm length: 371
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-401
Cow position:
Alignm length: 412
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 121

Conread position: 1-494
Cow position:
Alignm length: 507
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 134

Conread position: 1-576
Cow position:
Alignm length: 598
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 152

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 327
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 9

Conread position: 2-324
Cow position:
Alignm length: 328
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-324
Cow position:
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-327
Cow position:
Alignm length: 332
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-289
Cow position:
Alignm length: 293
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 12

Conread position: 3-317
Cow position:
Alignm length: 325
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 3-324
Cow position:
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 92

Conread position: 3-334
Cow position:
Alignm length: 343
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 134

Conread position: 3-342
Cow position:
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 3-352
Cow position:
Alignm length: 360
Alignm identity: 230
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 175, 33

Conread position: 4-218
Cow position:
Alignm length: 215
Alignm identity: 157
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 0

Conread position: 5-317
Cow position:
Alignm length: 318
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 6

Conread position: 7-280
Cow position:
Alignm length: 274
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 127, 0

Conread position: 7-319
Cow position:
Alignm length: 317
Alignm identity: 216
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 275, 227

Conread position: 7-336
Cow position:
Alignm length: 349
Alignm identity: 242
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 160, 65

Conread position: 7-393
Cow position:
Alignm length: 396
Alignm identity: 264
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 29, 162

Conread position: 8-320
Cow position:
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 52

Conread position: 9-317
Cow position:
Alignm length: 315
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 10-309
Cow position:
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 149

Conread position: 12-343
Cow position:
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 0

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 150

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 34

Conread position: 17-317
Cow position:
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 43

Conread position: 17-324
Cow position:
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 17-337
Cow position:
Alignm length: 323
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 267

Conread position: 17-342
Cow position:
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 134

Conread position: 17-348
Cow position:
Alignm length: 343
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 76

Conread position: 17-348
Cow position:
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 0

Conread position: 17-348
Cow position:
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 19-175
Cow position:
Alignm length: 157
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 0

Conread position: 20-289
Cow position:
Alignm length: 271
Alignm identity: 184
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 168

Conread position: 20-289
Cow position:
Alignm length: 271
Alignm identity: 189
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 220, 0

Conread position: 20-317
Cow position:
Alignm length: 303
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 0

Conread position: 20-389
Cow position:
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 243

Conread position: 20-390
Cow position:
Alignm length: 374
Alignm identity: 253
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 39, 52

Conread position: 21-234
Cow position:
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 21-280
Cow position:
Alignm length: 262
Alignm identity: 192
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 33, 46

Conread position: 21-280
Cow position:
Alignm length: 261
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 26, 40

Conread position: 21-282
Cow position:
Alignm length: 263
Alignm identity: 188
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 145, 139

Conread position: 21-381
Cow position:
Alignm length: 369
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 25

Conread position: 21-401
Cow position:
Alignm length: 390
Alignm identity: 252
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 251, 16

Conread position: 21-407
Cow position:
Alignm length: 392
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 51

Conread position: 25-173
Cow position:
Alignm length: 150
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 140, 0

Conread position: 26-393
Cow position:
Alignm length: 368
Alignm identity: 232
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 27-324
Cow position:
Alignm length: 303
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 61

Conread position: 27-336
Cow position:
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 206

Conread position: 31-401
Cow position:
Alignm length: 377
Alignm identity: 249
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 23, 38

Conread position: 31-410
Cow position:
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 106

Conread position: 35-271
Cow position:
Alignm length: 239
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 203, 31

Conread position: 35-348
Cow position:
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 59

Conread position: 42-223
Cow position:
Alignm length: 185
Alignm identity: 146
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 29, 49

Conread position: 42-359
Cow position:
Alignm length: 333
Alignm identity: 222
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 60, 188

Conread position: 50-278
Cow position:
Alignm length: 237
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 188

Conread position: 51-387
Cow position:
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 24

Conread position: 51-565
Cow position:
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 82

Conread position: 54-188
Cow position:
Alignm length: 136
Alignm identity: 108
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 55-286
Cow position:
Alignm length: 235
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 0

Conread position: 55-289
Cow position:
Alignm length: 235
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 74-324
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 101, 140

Conread position: 84-287
Cow position:
Alignm length: 206
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 84

Conread position: 94-309
Cow position:
Alignm length: 221
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 0

Conread position: 115-360
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 109, 58

Conread position: 144-571
Cow position:
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 286

Conread position: 157-316
Cow position:
Alignm length: 166
Alignm identity: 130
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 133, 40

Conread position: 163-405
Cow position:
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 63

Conread position: 187-295
Cow position:
Alignm length: 109
Alignm identity: 92
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 190-351
Cow position:
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 194-322
Cow position:
Alignm length: 134
Alignm identity: 108
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 91, 0

Conread position: 196-343
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 0

Show alignments to all cow chromosomes.