Cow genome map

Conread name: Ss1.1-rpigcf0_018239.5

Conread position: 1-151
Cow position:
Alignm length: 158
Alignm identity: 126
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 32, 73

Conread position: 1-166
Cow position:
Alignm length: 172
Alignm identity: 133
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 32, 93

Conread position: 1-169
Cow position:
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 0

Conread position: 1-172
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 1-201
Cow position:
Alignm length: 202
Alignm identity: 124
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 0

Conread position: 1-202
Cow position:
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 1-214
Cow position:
Alignm length: 214
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 1-215
Cow position:
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 1-244
Cow position:
Alignm length: 244
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 1-274
Cow position:
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 1-282
Cow position:
Alignm length: 289
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-289
Cow position:
Alignm length: 294
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 77

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 1-289
Cow position:
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 256

Conread position: 1-313
Cow position:
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 38

Conread position: 1-317
Cow position:
Alignm length: 330
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 1-317
Cow position:
Alignm length: 328
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 1-317
Cow position:
Alignm length: 330
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-317
Cow position:
Alignm length: 329
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 15

Conread position: 1-317
Cow position:
Alignm length: 327
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 17

Conread position: 1-319
Cow position:
Alignm length: 327
Alignm identity: 220
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 199

Conread position: 1-321
Cow position:
Alignm length: 329
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 276

Conread position: 1-324
Cow position:
Alignm length: 331
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 89

Conread position: 1-324
Cow position:
Alignm length: 331
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 89

Conread position: 1-324
Cow position:
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-324
Cow position:
Alignm length: 332
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 90

Conread position: 1-324
Cow position:
Alignm length: 330
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 20

Conread position: 1-324
Cow position:
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 257

Conread position: 1-327
Cow position:
Alignm length: 339
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 1-331
Cow position:
Alignm length: 336
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 36

Conread position: 1-333
Cow position:
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 100

Conread position: 1-334
Cow position:
Alignm length: 344
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 260

Conread position: 1-334
Cow position:
Alignm length: 346
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 199

Conread position: 1-334
Cow position:
Alignm length: 341
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 68

Conread position: 1-334
Cow position:
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 0

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-342
Cow position:
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 68

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-342
Cow position:
Alignm length: 362
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 1-342
Cow position:
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 1-342
Cow position:
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 272

Conread position: 1-342
Cow position:
Alignm length: 358
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 78

Conread position: 1-343
Cow position:
Alignm length: 353
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 93

Conread position: 1-348
Cow position:
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 236

Conread position: 1-348
Cow position:
Alignm length: 360
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 179

Conread position: 1-348
Cow position:
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 93

Conread position: 1-352
Cow position:
Alignm length: 367
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 201

Conread position: 1-358
Cow position:
Alignm length: 364
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 336

Conread position: 1-358
Cow position:
Alignm length: 369
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 48

Conread position: 1-361
Cow position:
Alignm length: 375
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-380
Cow position:
Alignm length: 392
Alignm identity: 250
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 7

Conread position: 1-393
Cow position:
Alignm length: 404
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 51

Conread position: 1-401
Cow position:
Alignm length: 410
Alignm identity: 264
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 8, 38

Conread position: 1-406
Cow position:
Alignm length: 413
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 28

Conread position: 1-408
Cow position:
Alignm length: 421
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 136

Conread position: 1-436
Cow position:
Alignm length: 453
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 189

Conread position: 1-509
Cow position:
Alignm length: 514
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 20

Conread position: 1-563
Cow position:
Alignm length: 591
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 36

Conread position: 1-575
Cow position:
Alignm length: 583
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 41

Conread position: 2-256
Cow position:
Alignm length: 255
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-317
Cow position:
Alignm length: 321
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 13

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-322
Cow position:
Alignm length: 326
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 2-342
Cow position:
Alignm length: 347
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 9

Conread position: 3-334
Cow position:
Alignm length: 346
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 337

Conread position: 4-343
Cow position:
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 53

Conread position: 4-348
Cow position:
Alignm length: 356
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-190
Cow position:
Alignm length: 186
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 169

Conread position: 7-278
Cow position:
Alignm length: 272
Alignm identity: 190
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 58, 0

Conread position: 7-287
Cow position:
Alignm length: 283
Alignm identity: 190
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 14

Conread position: 7-321
Cow position:
Alignm length: 321
Alignm identity: 217
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 57

Conread position: 7-351
Cow position:
Alignm length: 352
Alignm identity: 238
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 160, 12

Conread position: 7-353
Cow position:
Alignm length: 358
Alignm identity: 247
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 42

Conread position: 7-399
Cow position:
Alignm length: 412
Alignm identity: 280
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 46

Conread position: 7-403
Cow position:
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 57

Conread position: 8-277
Cow position:
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 8-390
Cow position:
Alignm length: 388
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 78

Conread position: 8-565
Cow position:
Alignm length: 564
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 97

Conread position: 11-289
Cow position:
Alignm length: 282
Alignm identity: 198
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 63, 250

Conread position: 11-565
Cow position:
Alignm length: 557
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 164

Conread position: 12-376
Cow position:
Alignm length: 373
Alignm identity: 250
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 112

Conread position: 12-390
Cow position:
Alignm length: 387
Alignm identity: 264
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 270, 25

Conread position: 16-215
Cow position:
Alignm length: 203
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 17-266
Cow position:
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 232

Conread position: 17-317
Cow position:
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 183

Conread position: 17-317
Cow position:
Alignm length: 306
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 17-348
Cow position:
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 17-352
Cow position:
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 77

Conread position: 19-259
Cow position:
Alignm length: 242
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 218, 100

Conread position: 20-257
Cow position:
Alignm length: 246
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 219

Conread position: 21-287
Cow position:
Alignm length: 270
Alignm identity: 193
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 244, 0

Conread position: 21-343
Cow position:
Alignm length: 331
Alignm identity: 221
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 64, 131

Conread position: 21-378
Cow position:
Alignm length: 371
Alignm identity: 257
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 135, 42

Conread position: 21-401
Cow position:
Alignm length: 388
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 67

Conread position: 21-405
Cow position:
Alignm length: 391
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 40

Conread position: 21-406
Cow position:
Alignm length: 388
Alignm identity: 256
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 59, 71

Conread position: 22-399
Cow position:
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 33

Conread position: 23-326
Cow position:
Alignm length: 316
Alignm identity: 202
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 50

Conread position: 26-261
Cow position:
Alignm length: 236
Alignm identity: 174
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 83, 0

Conread position: 26-373
Cow position:
Alignm length: 355
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 25

Conread position: 26-396
Cow position:
Alignm length: 395
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 34

Conread position: 26-436
Cow position:
Alignm length: 417
Alignm identity: 275
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 264, 39

Conread position: 27-289
Cow position:
Alignm length: 263
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 27-343
Cow position:
Alignm length: 326
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 152

Conread position: 27-393
Cow position:
Alignm length: 373
Alignm identity: 257
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 141, 106

Conread position: 27-399
Cow position:
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 26

Conread position: 27-405
Cow position:
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 110

Conread position: 28-324
Cow position:
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 230

Conread position: 28-338
Cow position:
Alignm length: 312
Alignm identity: 208
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 116, 104

Conread position: 29-324
Cow position:
Alignm length: 301
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 202

Conread position: 34-234
Cow position:
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 37-317
Cow position:
Alignm length: 286
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 0

Conread position: 55-324
Cow position:
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 16

Conread position: 55-390
Cow position:
Alignm length: 342
Alignm identity: 224
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 235, 113

Conread position: 56-565
Cow position:
Alignm length: 515
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 31

Conread position: 58-344
Cow position:
Alignm length: 294
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 0

Conread position: 61-322
Cow position:
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 0

Conread position: 61-385
Cow position:
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 174

Conread position: 75-327
Cow position:
Alignm length: 258
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 80-405
Cow position:
Alignm length: 333
Alignm identity: 236
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 208, 93

Conread position: 96-499
Cow position:
Alignm length: 410
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 93

Conread position: 108-393
Cow position:
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 213

Conread position: 121-267
Cow position:
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 128-405
Cow position:
Alignm length: 284
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 67

Conread position: 132-403
Cow position:
Alignm length: 277
Alignm identity: 182
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 158, 33

Conread position: 157-565
Cow position:
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 214

Conread position: 183-343
Cow position:
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 107, 14

Conread position: 190-526
Cow position:
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 228

Show alignments to all cow chromosomes.